Vandetanib_SW 1088 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Vandetanib perturbation in SW 1088 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Vandetanib_SW 1088 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
LOX lysyl oxidase 0.115149
CANX calnexin 0.0709372
UGCG UDP-glucose ceramide glucosyltransferase 0.0564497
ELL2 elongation factor, RNA polymerase II, 2 0.0552671
IQGAP1 IQ motif containing GTPase activating protein 1 0.0536329
LMAN1 lectin, mannose-binding, 1 0.048451
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 0.0475383
COG5 component of oligomeric golgi complex 5 0.047233
ZNF292 zinc finger protein 292 0.0471941
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0458888
QKI QKI, KH domain containing, RNA binding 0.0458057
ANKRD11 ankyrin repeat domain 11 0.0435148
CTNND1 catenin (cadherin-associated protein), delta 1 0.043159
F3 coagulation factor III (thromboplastin, tissue factor) 0.0431387
GLS2 glutaminase 2 (liver, mitochondrial) 0.0412775
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.0404069
TXNIP thioredoxin interacting protein 0.0403933
SDC4 syndecan 4 0.0395362
HYCC1 hyccin PI4KA lipid kinase complex subunit 1 0.0384696
YBX3 Y box binding protein 3 0.0381482
CLEC1B C-type lectin domain family 1, member B 0.0380734
EPS8 epidermal growth factor receptor pathway substrate 8 0.0378917
ZKSCAN1 zinc finger with KRAB and SCAN domains 1 0.0374022
AP3S1 adaptor-related protein complex 3, sigma 1 subunit 0.0373905
ATP13A3 ATPase type 13A3 0.0371844
SCAF8 SR-related CTD-associated factor 8 0.0365288
PCBP2 poly(rC) binding protein 2 0.0359765
SF3B1 splicing factor 3b, subunit 1, 155kDa 0.0357231
PDPK1 3-phosphoinositide dependent protein kinase 1 0.0355748
SLC16A1 solute carrier family 16 (monocarboxylate transporter), member 1 0.0350125
DSCAM Down syndrome cell adhesion molecule 0.0346473
PGK1 phosphoglycerate kinase 1 0.0344821
SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1 0.0344499
TNRC6A trinucleotide repeat containing 6A 0.0343585
KDM3A lysine (K)-specific demethylase 3A 0.0343352
FHIP1A FHF complex subunit HOOK interacting protein 1A 0.0338331
ARF1 ADP-ribosylation factor 1 0.0335726
KANSL1 KAT8 regulatory NSL complex subunit 1 0.0334706
ARL6IP5 ADP-ribosylation factor-like 6 interacting protein 5 0.0333097
MBD5 methyl-CpG binding domain protein 5 0.0331372
CAPZA1 capping protein (actin filament) muscle Z-line, alpha 1 0.0330353
COL1A1 collagen, type I, alpha 1 0.0329745
YTHDC1 YTH domain containing 1 0.0328525
RICTOR RPTOR independent companion of MTOR, complex 2 0.0326628
POLK polymerase (DNA directed) kappa 0.0326113
TNPO3 transportin 3 0.0325488
NCK1 NCK adaptor protein 1 0.0324875
ARID4B AT rich interactive domain 4B (RBP1-like) 0.0323862
TMEM41B transmembrane protein 41B 0.0320299
KDM5B lysine (K)-specific demethylase 5B 0.0319912
UBE2H ubiquitin-conjugating enzyme E2H 0.0318753
RBFOX2 RNA binding protein, fox-1 homolog (C. elegans) 2 0.0316216
PTK2 protein tyrosine kinase 2 0.0314309
UBE2D3 ubiquitin-conjugating enzyme E2D 3 0.0313368
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 0.0312555
OPTN optineurin 0.0310103
FMNL2 formin-like 2 0.0309082
TNPO1 transportin 1 0.0307594
SEC31A SEC31 homolog A (S. cerevisiae) 0.0306566
CREBBP CREB binding protein 0.0302363
MBNL1 muscleblind-like splicing regulator 1 0.0300391
UBQLN1 ubiquilin 1 0.0299699
GLG1 golgi glycoprotein 1 0.0299313
LAPTM4A lysosomal protein transmembrane 4 alpha 0.0298287
IST1 increased sodium tolerance 1 homolog (yeast) 0.0296751
FNBP1L formin binding protein 1-like 0.0293546
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0292649
SETX senataxin 0.0291524
ANKHD1 ankyrin repeat and KH domain containing 1 0.028983
FAM13A family with sequence similarity 13, member A 0.0289733
FYN FYN proto-oncogene, Src family tyrosine kinase 0.0288584
SMAD2 SMAD family member 2 0.0284974
TMEM39A transmembrane protein 39A 0.028493
MATR3 matrin 3 0.0284809
MALT1 MALT1 paracaspase 0.0281045
MT1X metallothionein 1X 0.0278936
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa 0.0278772
RBM15 RNA binding motif protein 15 0.0276962
ANXA2 annexin A2 0.0276428
PPA1 pyrophosphatase (inorganic) 1 0.0275496
NCOA3 nuclear receptor coactivator 3 0.0275413
NRXN3 neurexin 3 0.0271039
CLTC clathrin, heavy chain (Hc) 0.027002
MYO10 myosin X 0.0269558
ANKRA2 ankyrin repeat, family A (RFXANK-like), 2 0.0269117
CDKAL1 CDK5 regulatory subunit associated protein 1-like 1 0.0268533
CD2AP CD2-associated protein 0.0264104
MAP2K1 mitogen-activated protein kinase kinase 1 0.0263314
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.0262781
AKAP9 A kinase (PRKA) anchor protein 9 0.026258
NSMCE2 non-SMC element 2, MMS21 homolog (S. cerevisiae) 0.0262579
UBA6 ubiquitin-like modifier activating enzyme 6 0.0262055
MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 0.0261904
ANKRD33B ankyrin repeat domain 33B 0.0261389
STK4 serine/threonine kinase 4 0.0260497
TLK1 tousled-like kinase 1 0.0260232
BTRC beta-transducin repeat containing E3 ubiquitin protein ligase 0.0259973
RHOBTB3 Rho-related BTB domain containing 3 0.0259053
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0258277
ACSL3 acyl-CoA synthetase long-chain family member 3 0.0257331

decreased expression

Symbol Name Standardized Value
TMSB10 thymosin beta 10 -0.143818
CXCL8 chemokine (C-X-C motif) ligand 8 -0.107722
IGFBP3 insulin-like growth factor binding protein 3 -0.101457
FN1 fibronectin 1 -0.0832382
TGFBI transforming growth factor, beta-induced, 68kDa -0.0762926
FTL ferritin, light polypeptide -0.0646914
NDRG1 N-myc downstream regulated 1 -0.0613497
MT2A metallothionein 2A -0.0583059
HMGA2 high mobility group AT-hook 2 -0.0565567
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 -0.0561795
CDH13 cadherin 13 -0.0548707
HLA-C major histocompatibility complex, class I, C -0.0546892
ZC3HAV1 zinc finger CCCH-type, antiviral 1 -0.0545961
FNDC3B fibronectin type III domain containing 3B -0.0525497
TNS3 tensin 3 -0.0512311
ACTG1 actin gamma 1 -0.0508035
TRIO trio Rho guanine nucleotide exchange factor -0.0506403
IL6 interleukin 6 -0.0485488
SBF2 SET binding factor 2 -0.047963
MARCKS myristoylated alanine-rich protein kinase C substrate -0.0462107
SEMA5A sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A -0.0453304
ENO1 enolase 1, (alpha) -0.0442717
LOC112694756 uncharaterized LOC112694756 -0.0428602
EXT1 exostosin glycosyltransferase 1 -0.0425278
COL6A1 collagen, type VI, alpha 1 -0.0417834
POTEF POTE ankyrin domain family, member F -0.0410915
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) -0.0408624
IGFBP7 insulin-like growth factor binding protein 7 -0.0407395
RPS16 ribosomal protein S16 -0.0384634
FOSL1 FOS-like antigen 1 -0.0376733
GLIS3 GLIS family zinc finger 3 -0.0372614
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0361711
COL4A2 collagen, type IV, alpha 2 -0.0352396
TMEM158 transmembrane protein 158 (gene/pseudogene) -0.0349872
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 -0.0348487
RPL28 ribosomal protein L28 -0.033907
ANXA1 annexin A1 -0.0334121
PDE4D phosphodiesterase 4D, cAMP-specific -0.0330034
VEGFA vascular endothelial growth factor A -0.0327781
S100A10 S100 calcium binding protein A10 -0.0326881
ITGA3 integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor) -0.0324377
TPM1 tropomyosin 1 (alpha) -0.0324255
VEGFC vascular endothelial growth factor C -0.032267
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.0319867
B2M beta-2-microglobulin -0.0318621
RNF145 ring finger protein 145 -0.0311975
MYADM myeloid-associated differentiation marker -0.0303608
ITPR1 inositol 1,4,5-trisphosphate receptor, type 1 -0.0299614
TIMP3 TIMP metallopeptidase inhibitor 3 -0.0298244
COL6A3 collagen, type VI, alpha 3 -0.0297692
CDK13 cyclin-dependent kinase 13 -0.0293156
MXI1 MAX interactor 1, dimerization protein -0.0288415
DDX1 DEAD (Asp-Glu-Ala-Asp) box helicase 1 -0.0286023
RAB6A RAB6A, member RAS oncogene family -0.0285127
RPL36 ribosomal protein L36 -0.0283841
ZFP36L1 ZFP36 ring finger protein-like 1 -0.028376
PRSS23 protease, serine, 23 -0.027847
IGF1R insulin-like growth factor 1 receptor -0.0277363
ESYT2 extended synaptotagmin-like protein 2 -0.0274507
PDLIM5 PDZ and LIM domain 5 -0.0271772
RPS12 ribosomal protein S12 -0.0271622
PTPRM protein tyrosine phosphatase, receptor type, M -0.0271474
EGFR epidermal growth factor receptor -0.0266993
MRTFA myocardin related transcription factor A -0.0266053
PEAK1 pseudopodium-enriched atypical kinase 1 -0.0265553
JARID2 jumonji, AT rich interactive domain 2 -0.0265258
LOXL2 lysyl oxidase-like 2 -0.0259174
NABP1 nucleic acid binding protein 1 -0.0257842
SECISBP2L SECIS binding protein 2-like -0.0255019
PFN1 profilin 1 -0.0253468
TTC3 tetratricopeptide repeat domain 3 -0.0252137
RUNX1 runt-related transcription factor 1 -0.025185
RPL23 ribosomal protein L23 -0.025181
RPL19 ribosomal protein L19 -0.0250672
LIMS1 LIM and senescent cell antigen-like domains 1 -0.0247622
PHC2 polyhomeotic homolog 2 (Drosophila) -0.0247557
CALD1 caldesmon 1 -0.0244005
IL6ST interleukin 6 signal transducer -0.0243575
TUBA1B tubulin, alpha 1b -0.0242271
FRMD4A FERM domain containing 4A -0.0242009
EGR1 early growth response 1 -0.0241157
WDR43 WD repeat domain 43 -0.0239378
DST dystonin -0.0238335
ROS1 ROS proto-oncogene 1 , receptor tyrosine kinase -0.0236864
TSC22D1 TSC22 domain family, member 1 -0.0236634
ROBO1 roundabout, axon guidance receptor, homolog 1 (Drosophila) -0.0236568
ZC3H13 zinc finger CCCH-type containing 13 -0.0236188
IPO9 importin 9 -0.023608
SIPA1L1 signal-induced proliferation-associated 1 like 1 -0.0235133
CBX3 chromobox homolog 3 -0.0234864
PTGES2 prostaglandin E synthase 2 -0.0234832
UQCRB ubiquinol-cytochrome c reductase binding protein -0.023422
PPFIA1 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 -0.0230223
TFPI2 tissue factor pathway inhibitor 2 -0.0228915
WWOX WW domain containing oxidoreductase -0.0228718
PLCB4 phospholipase C, beta 4 -0.0227251
ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 -0.0226087
EPAS1 endothelial PAS domain protein 1 -0.0226007
DDIT4 DNA-damage-inducible transcript 4 -0.022492
COL7A1 collagen, type VII, alpha 1 -0.0223933