Vemurafenib_NCI-H1792 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Vemurafenib perturbation in NCI-H1792 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Vemurafenib_NCI-H1792 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
AKAP12 A kinase (PRKA) anchor protein 12 0.154638
SDK1 sidekick cell adhesion molecule 1 0.126436
GRB10 growth factor receptor-bound protein 10 0.112033
VIM vimentin 0.109653
STC1 stanniocalcin 1 0.0912959
NDRG1 N-myc downstream regulated 1 0.0864754
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.0832772
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 0.0824145
CDH13 cadherin 13 0.0748596
NAV2 neuron navigator 2 0.0744394
TFPI2 tissue factor pathway inhibitor 2 0.0696486
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 0.0694978
CXCL8 chemokine (C-X-C motif) ligand 8 0.0694003
PCBP2 poly(rC) binding protein 2 0.0692592
EFNA5 ephrin-A5 0.0673947
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0672595
ITPR1 inositol 1,4,5-trisphosphate receptor, type 1 0.0656636
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 0.0654315
P4HB prolyl 4-hydroxylase, beta polypeptide 0.0637851
KDM2A lysine (K)-specific demethylase 2A 0.0621422
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.0609851
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 0.0599783
LOXL2 lysyl oxidase-like 2 0.0586174
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.0582199
PHLDA1 pleckstrin homology-like domain, family A, member 1 0.0577689
TIMP1 TIMP metallopeptidase inhibitor 1 0.0561068
MTSS1 metastasis suppressor 1 0.0560594
APBB2 amyloid beta (A4) precursor protein-binding, family B, member 2 0.0552913
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.0551798
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 0.0539036
AKAP13 A kinase (PRKA) anchor protein 13 0.0536773
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0524318
HMGA2 high mobility group AT-hook 2 0.0500538
USP34 ubiquitin specific peptidase 34 0.0496143
DOCK5 dedicator of cytokinesis 5 0.0487084
CAMK1D calcium/calmodulin-dependent protein kinase ID 0.0486659
PDGFA platelet-derived growth factor alpha polypeptide 0.0461003
JARID2 jumonji, AT rich interactive domain 2 0.0441741
LOX lysyl oxidase 0.0440782
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.0422178
VEGFA vascular endothelial growth factor A 0.042065
DTNA dystrobrevin, alpha 0.0416655
MSRB3 methionine sulfoxide reductase B3 0.0413783
PTK2 protein tyrosine kinase 2 0.0406147
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 0.0392957
RAB1A RAB1A, member RAS oncogene family 0.0389277
ASCC3 activating signal cointegrator 1 complex subunit 3 0.0379171
ZSWIM6 zinc finger, SWIM-type containing 6 0.0376874
ASPH aspartate beta-hydroxylase 0.0375973
GALNT18 polypeptide N-acetylgalactosaminyltransferase 18 0.0375457
HMGA1 high mobility group AT-hook 1 0.0375159
MYC v-myc avian myelocytomatosis viral oncogene homolog 0.0370657
AADAC arylacetamide deacetylase 0.0349843
KTN1 kinectin 1 (kinesin receptor) 0.0347225
ATXN1 ataxin 1 0.0346701
GFPT2 glutamine-fructose-6-phosphate transaminase 2 0.0346356
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 0.0334697
CD44 CD44 molecule (Indian blood group) 0.0331137
ANGPTL4 angiopoietin-like 4 0.033051
FLNB filamin B, beta 0.0328931
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0327351
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 0.0324407
GREB1L growth regulation by estrogen in breast cancer-like 0.0324105
FAM107B family with sequence similarity 107, member B 0.0323291
SIK3 SIK family kinase 3 0.0315726
BNIP3L BCL2/adenovirus E1B 19kDa interacting protein 3-like 0.0313494
FTH1 ferritin, heavy polypeptide 1 0.031261
EGR1 early growth response 1 0.0311351
ESYT2 extended synaptotagmin-like protein 2 0.0302452
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 0.0301221
MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 0.0301009
SEC24A SEC24 family member A 0.0300159
MYO10 myosin X 0.0299402
CA12 carbonic anhydrase XII 0.0297518
EEF2 eukaryotic translation elongation factor 2 0.0296957
MACF1 microtubule-actin crosslinking factor 1 0.0296457
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 0.029562
SMAD3 SMAD family member 3 0.0294562
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 0.0289081
ATP2B4 ATPase, Ca++ transporting, plasma membrane 4 0.0287713
LDHA lactate dehydrogenase A 0.028698
ANTXR2 anthrax toxin receptor 2 0.0286746
APLP2 amyloid beta (A4) precursor-like protein 2 0.0284794
NFATC2 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 0.0284332
IL1B interleukin 1, beta 0.0283467
TGM2 transglutaminase 2 0.028297
UBE2E2 ubiquitin-conjugating enzyme E2E 2 0.0282235
SEC31A SEC31 homolog A (S. cerevisiae) 0.0278021
FHIP1A FHF complex subunit HOOK interacting protein 1A 0.0277908
GOLGA4 golgin A4 0.0277544
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 0.0275585
RUNX1 runt-related transcription factor 1 0.0274945
PKM pyruvate kinase, muscle 0.0271247
RBPJ recombination signal binding protein for immunoglobulin kappa J region 0.0270408
RICTOR RPTOR independent companion of MTOR, complex 2 0.0268952
RAP1B RAP1B, member of RAS oncogene family 0.0263682
EXT1 exostosin glycosyltransferase 1 0.0263064
MYADM myeloid-associated differentiation marker 0.0262101
MT2A metallothionein 2A 0.0261118
CLMP CXADR-like membrane protein 0.0260224

decreased expression

Symbol Name Standardized Value
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0903699
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) -0.0707515
NAMPT nicotinamide phosphoribosyltransferase -0.0603421
GLCCI1 glucocorticoid induced 1 -0.0512587
CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 -0.045973
RAD51B RAD51 paralog B -0.0374557
NCOA7 nuclear receptor coactivator 7 -0.0355402
PDE4D phosphodiesterase 4D, cAMP-specific -0.0354736
KDM3A lysine (K)-specific demethylase 3A -0.0325295
ZMYND8 zinc finger, MYND-type containing 8 -0.0305467
AOPEP aminopeptidase O (putative) -0.0286777
INPP4B inositol polyphosphate-4-phosphatase, type II, 105kDa -0.0286721
PTPRK protein tyrosine phosphatase, receptor type, K -0.02842
OSMR oncostatin M receptor -0.027692
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0274702
ETV6 ets variant 6 -0.0269574
PAPPA pregnancy-associated plasma protein A, pappalysin 1 -0.0269303
DST dystonin -0.0267907
HEG1 heart development protein with EGF-like domains 1 -0.0263831
GPC6 glypican 6 -0.0263056
CANX calnexin -0.0262695
GCC2 GRIP and coiled-coil domain containing 2 -0.0260586
ZBTB20 zinc finger and BTB domain containing 20 -0.0257962
STRN3 striatin, calmodulin binding protein 3 -0.0257125
COL12A1 collagen, type XII, alpha 1 -0.0247112
ABCA6 ATP-binding cassette, sub-family A (ABC1), member 6 -0.0245006
KYNU kynureninase -0.0244566
KCNQ5 potassium channel, voltage gated KQT-like subfamily Q, member 5 -0.0242807
PTPRR protein tyrosine phosphatase, receptor type, R -0.0232845
PTGIS prostaglandin I2 (prostacyclin) synthase -0.0228765
BABAM2 BRISC and BRCA1 A complex member 2 -0.0214079
FAM20C family with sequence similarity 20, member C -0.021072
SUMF1 sulfatase modifying factor 1 -0.0208938
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.0205581
MECOM MDS1 and EVI1 complex locus -0.0203089
SPRED2 sprouty-related, EVH1 domain containing 2 -0.0200868
PRELID2 PRELI domain containing 2 -0.0198076
FNBP1 formin binding protein 1 -0.0197757
HDLBP high density lipoprotein binding protein -0.019648
H1-0 H1.0 linker histone -0.0193753
ANTXR1 anthrax toxin receptor 1 -0.0192899
ZNF804A zinc finger protein 804A -0.0192664
NPC1 Niemann-Pick disease, type C1 -0.0192469
DPYD dihydropyrimidine dehydrogenase -0.019246
RAB27B RAB27B, member RAS oncogene family -0.0189438
WSB1 WD repeat and SOCS box containing 1 -0.0185432
DDX60L DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like -0.0184426
RBM39 RNA binding motif protein 39 -0.0184334
MBD5 methyl-CpG binding domain protein 5 -0.0182905
KCTD16 potassium channel tetramerization domain containing 16 -0.0181038
ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1 -0.0180016
LMAN1 lectin, mannose-binding, 1 -0.0178382
RNF24 ring finger protein 24 -0.017435
ARHGAP24 Rho GTPase activating protein 24 -0.0173098
CEP95 centrosomal protein 95kDa -0.0171331
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 -0.0169457
CAB39 calcium binding protein 39 -0.0165398
ZFR zinc finger RNA binding protein -0.0163692
KSR1 kinase suppressor of ras 1 -0.0159888
LARS1 leucyl-tRNA synthetase 1 -0.0159475
MEIS1 Meis homeobox 1 -0.0158762
GALK2 galactokinase 2 -0.0157337
CACNA2D1 calcium channel, voltage-dependent, alpha 2/delta subunit 1 -0.0155857
P4HA2 prolyl 4-hydroxylase, alpha polypeptide II -0.0153996
VCL vinculin -0.0153642
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) -0.015141
ARID5B AT rich interactive domain 5B (MRF1-like) -0.015054
RALA v-ral simian leukemia viral oncogene homolog A (ras related) -0.0149142
ANAPC5 anaphase promoting complex subunit 5 -0.014906
IFI16 interferon, gamma-inducible protein 16 -0.0148279
SCLT1 sodium channel and clathrin linker 1 -0.0147432
LRRC49 leucine rich repeat containing 49 -0.0146939
FRMD5 FERM domain containing 5 -0.0146044
MIB1 mindbomb E3 ubiquitin protein ligase 1 -0.0143505
ARFGEF2 ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) -0.014031
PHF3 PHD finger protein 3 -0.0138355
APOLD1 apolipoprotein L domain containing 1 -0.0137774
MTERF1 mitochondrial transcription termination factor 1 -0.0137299
PHF14 PHD finger protein 14 -0.0135921
KLF7 Kruppel-like factor 7 (ubiquitous) -0.0134781
ANKIB1 ankyrin repeat and IBR domain containing 1 -0.013418
PID1 phosphotyrosine interaction domain containing 1 -0.0133093
RHOBTB3 Rho-related BTB domain containing 3 -0.0130472
MARCHF6 membrane associated ring-CH-type finger 6 -0.0129977
APP amyloid beta (A4) precursor protein -0.0129452
ARHGAP5 Rho GTPase activating protein 5 -0.0128893
ENOSF1 enolase superfamily member 1 -0.0128574
B4GALT5 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5 -0.0128204
TRPC4AP transient receptor potential cation channel, subfamily C, member 4 associated protein -0.012814
TGFBR2 transforming growth factor, beta receptor II (70/80kDa) -0.0127925
MAP4 microtubule-associated protein 4 -0.0127662
RNF149 ring finger protein 149 -0.0126842
SPIDR scaffolding protein involved in DNA repair -0.0126238
NAALADL2 N-acetylated alpha-linked acidic dipeptidase-like 2 -0.0126101
CTNND1 catenin (cadherin-associated protein), delta 1 -0.0125721
FOXP2 forkhead box P2 -0.0125309
ICA1 islet cell autoantigen 1, 69kDa -0.0124706
MAN2A1 mannosidase, alpha, class 2A, member 1 -0.0124451
HECTD1 HECT domain containing E3 ubiquitin protein ligase 1 -0.0124073
CDK17 cyclin-dependent kinase 17 -0.0123881