Vemurafenib_NCI-H2347 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Vemurafenib perturbation in NCI-H2347 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Vemurafenib_NCI-H2347 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.137837
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 0.101851
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.0991638
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 0.0933335
GRB10 growth factor receptor-bound protein 10 0.0918225
ACTG1 actin gamma 1 0.0813214
NDRG1 N-myc downstream regulated 1 0.077493
ELL2 elongation factor, RNA polymerase II, 2 0.0751537
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.0716801
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0649821
FNDC3B fibronectin type III domain containing 3B 0.0638318
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 0.0623326
ZFP36L1 ZFP36 ring finger protein-like 1 0.0593829
EZR ezrin 0.0564227
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0553312
FAM13A family with sequence similarity 13, member A 0.0552695
LAMC2 laminin, gamma 2 0.0552439
TRIO trio Rho guanine nucleotide exchange factor 0.0548328
TOP1 topoisomerase (DNA) I 0.0546886
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0518258
HSPA8 heat shock 70kDa protein 8 0.0515368
AHNAK AHNAK nucleoprotein 0.0514274
MBOAT2 membrane bound O-acyltransferase domain containing 2 0.0503667
DTNA dystrobrevin, alpha 0.0492036
DSPP dentin sialophosphoprotein 0.0473132
UBC ubiquitin C 0.0470083
RAB7A RAB7A, member RAS oncogene family 0.0469435
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa 0.0462171
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa 0.0450166
EGR1 early growth response 1 0.0447059
TMSB4X thymosin beta 4, X-linked 0.0445278
MARCHF6 membrane associated ring-CH-type finger 6 0.0418777
ZFAND3 zinc finger, AN1-type domain 3 0.041875
PLEC plectin 0.0411673
UBA6 ubiquitin-like modifier activating enzyme 6 0.0383435
DYRK1A dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A 0.0372723
RAD21 RAD21 homolog (S. pombe) 0.0371231
KDM5B lysine (K)-specific demethylase 5B 0.0368805
LDHA lactate dehydrogenase A 0.036872
IQGAP1 IQ motif containing GTPase activating protein 1 0.0358145
LMNA lamin A/C 0.0351755
FOS FBJ murine osteosarcoma viral oncogene homolog 0.0347923
RAB11FIP1 RAB11 family interacting protein 1 (class I) 0.034038
COPA coatomer protein complex, subunit alpha 0.0340306
RYBP RING1 and YY1 binding protein 0.0338406
RHOA ras homolog family member A 0.0333194
AFF4 AF4/FMR2 family, member 4 0.0332843
RLF rearranged L-myc fusion 0.033154
BZW1 basic leucine zipper and W2 domains 1 0.0330779
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0326398
RCOR1 REST corepressor 1 0.0324116
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 0.0321402
S100A6 S100 calcium binding protein A6 0.032062
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 0.0320435
NFKB1 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 0.0319455
MAP1B microtubule-associated protein 1B 0.0314114
NUMB numb homolog (Drosophila) 0.0308614
TSC22D2 TSC22 domain family, member 2 0.0306891
HSPA9 heat shock 70kDa protein 9 (mortalin) 0.0306751
SDC4 syndecan 4 0.0298905
IFRD1 interferon-related developmental regulator 1 0.0298686
KRT7 keratin 7, type II 0.0297416
TPM3 tropomyosin 3 0.0296156
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 0.0294196
LAMB3 laminin, beta 3 0.0292612
CANX calnexin 0.0290692
RAB1A RAB1A, member RAS oncogene family 0.0288751
WDFY2 WD repeat and FYVE domain containing 2 0.0282084
MSN moesin 0.0281426
RBM39 RNA binding motif protein 39 0.0279383
POTEF POTE ankyrin domain family, member F 0.0277682
G0S2 G0/G1 switch 2 0.0273525
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 0.0271797
MYH9 myosin, heavy chain 9, non-muscle 0.0268736
CALR calreticulin 0.0268073
PUM1 pumilio RNA-binding family member 1 0.026194
MXD1 MAX dimerization protein 1 0.0261776
PTK2 protein tyrosine kinase 2 0.0256877
ANXA2 annexin A2 0.0255883
SPAG9 sperm associated antigen 9 0.0254752
MKLN1 muskelin 1, intracellular mediator containing kelch motifs 0.0254133
BLZF1 basic leucine zipper nuclear factor 1 0.0253957
PRRC2C proline-rich coiled-coil 2C 0.024824
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 0.0244652
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0244643
HMGB2 high mobility group box 2 0.0244565
RREB1 ras responsive element binding protein 1 0.0243895
USP3 ubiquitin specific peptidase 3 0.0242842
KDM3A lysine (K)-specific demethylase 3A 0.0242683
TRA2A transformer 2 alpha homolog (Drosophila) 0.0242487
FLNB filamin B, beta 0.0240254
NAMPT nicotinamide phosphoribosyltransferase 0.0240209
TNFAIP3 tumor necrosis factor, alpha-induced protein 3 0.0239751
YME1L1 YME1-like 1 ATPase 0.0238279
TMSB10 thymosin beta 10 0.0237524
COPB1 coatomer protein complex, subunit beta 1 0.0235029
ARRDC3 arrestin domain containing 3 0.0233718
PTPRJ protein tyrosine phosphatase, receptor type, J 0.0232024
RBM25 RNA binding motif protein 25 0.0231033
SLMAP sarcolemma associated protein 0.0229981

decreased expression

Symbol Name Standardized Value
FTL ferritin, light polypeptide -0.111333
FN1 fibronectin 1 -0.0894476
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0678227
ASPH aspartate beta-hydroxylase -0.0663081
ALCAM activated leukocyte cell adhesion molecule -0.0615736
TXNIP thioredoxin interacting protein -0.0567646
EFNA5 ephrin-A5 -0.0559409
SAMD4A sterile alpha motif domain containing 4A -0.0526947
RPL37A ribosomal protein L37a -0.0425211
EXT1 exostosin glycosyltransferase 1 -0.0404938
DCBLD2 discoidin, CUB and LCCL domain containing 2 -0.0403961
RBM47 RNA binding motif protein 47 -0.0391251
RPS29 ribosomal protein S29 -0.0375875
CASK calcium/calmodulin-dependent serine protein kinase (MAGUK family) -0.0370497
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) -0.0363834
ZBTB20 zinc finger and BTB domain containing 20 -0.0360744
IFI6 interferon, alpha-inducible protein 6 -0.0332269
ARHGAP20 Rho GTPase activating protein 20 -0.0328113
LIMCH1 LIM and calponin homology domains 1 -0.0306166
FBXO32 F-box protein 32 -0.0300481
ARHGEF3 Rho guanine nucleotide exchange factor (GEF) 3 -0.0291388
PGBD5 piggyBac transposable element derived 5 -0.0284821
IGFBP3 insulin-like growth factor binding protein 3 -0.0281896
ETV6 ets variant 6 -0.0274494
RPL35A ribosomal protein L35a -0.0271063
HMGA1 high mobility group AT-hook 1 -0.0266873
LMO7 LIM domain 7 -0.0260351
OSMR oncostatin M receptor -0.0259702
VCL vinculin -0.0246901
RPL31 ribosomal protein L31 -0.0241565
BPTF bromodomain PHD finger transcription factor -0.0237593
PPP2R3A protein phosphatase 2, regulatory subunit B'', alpha -0.0236031
MBNL1 muscleblind-like splicing regulator 1 -0.023591
RPL11 ribosomal protein L11 -0.023349
ATXN1 ataxin 1 -0.0231241
RPS27 ribosomal protein S27 -0.0231104
PATJ PATJ crumbs cell polarity complex component -0.0230634
RPS12 ribosomal protein S12 -0.0229552
OCLN occludin -0.0229255
CREB3L2 cAMP responsive element binding protein 3-like 2 -0.022906
CD109 CD109 molecule -0.0226993
NTN4 netrin 4 -0.0226651
NSMCE2 non-SMC element 2, MMS21 homolog (S. cerevisiae) -0.0224543
RAD51B RAD51 paralog B -0.0223046
AKAP9 A kinase (PRKA) anchor protein 9 -0.0223044
DSCAM Down syndrome cell adhesion molecule -0.022127
FBXO34 F-box protein 34 -0.0220276
SH3RF1 SH3 domain containing ring finger 1 -0.0218969
LPP LIM domain containing preferred translocation partner in lipoma -0.0218677
ARHGAP5 Rho GTPase activating protein 5 -0.0218293
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.0215648
RPS25 ribosomal protein S25 -0.0213828
MGST1 microsomal glutathione S-transferase 1 -0.021323
RNF19A ring finger protein 19A, RBR E3 ubiquitin protein ligase -0.021177
RPS13 ribosomal protein S13 -0.0208337
RPS6 ribosomal protein S6 -0.0204657
GLCCI1 glucocorticoid induced 1 -0.0201155
SVIL supervillin -0.0196521
MACC1 metastasis associated in colon cancer 1 -0.0195882
EGFR epidermal growth factor receptor -0.0194583
IFITM3 interferon induced transmembrane protein 3 -0.0194121
NR3C2 nuclear receptor subfamily 3, group C, member 2 -0.0193575
LOC112694756 uncharaterized LOC112694756 -0.0193128
CPNE8 copine VIII -0.0191766
PHF3 PHD finger protein 3 -0.0189406
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) -0.018881
N4BP2L2 NEDD4 binding protein 2-like 2 -0.0187542
NRIP1 nuclear receptor interacting protein 1 -0.0187306
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) -0.0184274
COL8A1 collagen, type VIII, alpha 1 -0.0183616
ARB2A ARB2 cotranscriptional regulator A -0.0182459
FAM3C family with sequence similarity 3, member C -0.0178793
UQCRB ubiquinol-cytochrome c reductase binding protein -0.0178499
CEP350 centrosomal protein 350kDa -0.0178348
PALLD palladin, cytoskeletal associated protein -0.0176489
TNFRSF21 tumor necrosis factor receptor superfamily, member 21 -0.0176211
PCNX4 pecanex 4 -0.017531
MAP4K3 mitogen-activated protein kinase kinase kinase kinase 3 -0.0173218
INPP4B inositol polyphosphate-4-phosphatase, type II, 105kDa -0.0172983
SH3RF2 SH3 domain containing ring finger 2 -0.0171504
DLC1 DLC1 Rho GTPase activating protein -0.016955
RPS3 ribosomal protein S3 -0.0169267
MBNL2 muscleblind-like splicing regulator 2 -0.016862
FHIT fragile histidine triad -0.0167438
RALGPS2 Ral GEF with PH domain and SH3 binding motif 2 -0.016546
MAML2 mastermind-like 2 (Drosophila) -0.0163656
ERBIN erbb2 interacting protein -0.0162491
FRMD5 FERM domain containing 5 -0.0162365
CD46 CD46 molecule, complement regulatory protein -0.0160468
THRB thyroid hormone receptor, beta -0.0160246
PPARG peroxisome proliferator-activated receptor gamma -0.0156208
ERGIC1 endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1 -0.0154732
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) -0.0154686
VPS13B vacuolar protein sorting 13 homolog B (yeast) -0.0152839
PPP1R12B protein phosphatase 1, regulatory subunit 12B -0.0152362
HDAC8 histone deacetylase 8 -0.0152047
SLC20A2 solute carrier family 20 (phosphate transporter), member 2 -0.0150717
EXOC4 exocyst complex component 4 -0.0150048
FER fer (fps/fes related) tyrosine kinase -0.0149315
FNIP1 folliculin interacting protein 1 -0.0147998