Verapamil_HepG2/C3A Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Verapamil perturbation in HepG2/C3A cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Verapamil_HepG2/C3A drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
ERRFI1 ERBB receptor feedback inhibitor 1 0.256313
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.173937
FNDC3B fibronectin type III domain containing 3B 0.156033
ENO1 enolase 1, (alpha) 0.11744
RALGAPA2 Ral GTPase activating protein, alpha subunit 2 (catalytic) 0.104811
DSPP dentin sialophosphoprotein 0.0992977
APOB apolipoprotein B 0.0934945
C3 complement component 3 0.0928954
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.091352
TF transferrin 0.0911357
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0847756
DTNA dystrobrevin, alpha 0.0803717
AFDN afadin, adherens junction formation factor 0.0780213
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.0767189
LRRTM4 leucine rich repeat transmembrane neuronal 4 0.0738739
ROBO1 roundabout, axon guidance receptor, homolog 1 (Drosophila) 0.0699546
PTPRM protein tyrosine phosphatase, receptor type, M 0.0687129
EIF3A eukaryotic translation initiation factor 3, subunit A 0.0628251
PUM2 pumilio RNA-binding family member 2 0.0609257
RERE arginine-glutamic acid dipeptide (RE) repeats 0.0602241
GRK3 G protein-coupled receptor kinase 3 0.0571113
ACSL4 acyl-CoA synthetase long-chain family member 4 0.0540178
FHIP1A FHF complex subunit HOOK interacting protein 1A 0.0524678
SAMD4A sterile alpha motif domain containing 4A 0.0524654
SLC41A2 solute carrier family 41 (magnesium transporter), member 2 0.0488643
DDIT4 DNA-damage-inducible transcript 4 0.0480674
ZNF292 zinc finger protein 292 0.0479946
FMNL2 formin-like 2 0.0466545
PSME4 proteasome (prosome, macropain) activator subunit 4 0.0450713
WNK1 WNK lysine deficient protein kinase 1 0.044933
ELL2 elongation factor, RNA polymerase II, 2 0.044911
QKI QKI, KH domain containing, RNA binding 0.0448102
ASPH aspartate beta-hydroxylase 0.0444367
MAN1A1 mannosidase, alpha, class 1A, member 1 0.0440004
MTUS1 microtubule associated tumor suppressor 1 0.0432316
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 0.0419971
DST dystonin 0.0419726
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0415726
PLIN2 perilipin 2 0.0415169
MACF1 microtubule-actin crosslinking factor 1 0.0414766
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.04048
AKAP12 A kinase (PRKA) anchor protein 12 0.0399938
PRELID2 PRELI domain containing 2 0.039622
HELZ helicase with zinc finger 0.0392872
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.039163
EXT1 exostosin glycosyltransferase 1 0.0388765
ANKRD12 ankyrin repeat domain 12 0.0386997
RPS3 ribosomal protein S3 0.0376149
MYO1B myosin IB 0.0368329
RAB1A RAB1A, member RAS oncogene family 0.0368188
KDM3A lysine (K)-specific demethylase 3A 0.0365671
RAPGEF6 Rap guanine nucleotide exchange factor (GEF) 6 0.0364068
SLC7A2 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 0.036081
RAPGEF1 Rap guanine nucleotide exchange factor (GEF) 1 0.0355316
BNIP3 BCL2/adenovirus E1B 19kDa interacting protein 3 0.035243
PTBP3 polypyrimidine tract binding protein 3 0.0347756
PHYHIPL phytanoyl-CoA 2-hydroxylase interacting protein-like 0.0347309
FAM13A family with sequence similarity 13, member A 0.0344447
KIAA1217 KIAA1217 0.0343303
WWC2 WW and C2 domain containing 2 0.0338238
H1-0 H1.0 linker histone 0.0337947
WDFY2 WD repeat and FYVE domain containing 2 0.0329537
CEMIP2 cell migration inducing hyaluronidase 2 0.0324211
USP47 ubiquitin specific peptidase 47 0.0320926
PPP2R2A protein phosphatase 2, regulatory subunit B, alpha 0.0318714
SESTD1 SEC14 and spectrin domains 1 0.0317335
CALD1 caldesmon 1 0.0312631
TOP1 topoisomerase (DNA) I 0.0312335
INSIG2 insulin induced gene 2 0.0312215
KIF1B kinesin family member 1B 0.030966
NBAS neuroblastoma amplified sequence 0.0305553
CDK19 cyclin-dependent kinase 19 0.030439
TNRC6B trinucleotide repeat containing 6B 0.0303725
DOCK4 dedicator of cytokinesis 4 0.0302094
TGFBI transforming growth factor, beta-induced, 68kDa 0.0289822
PHF3 PHD finger protein 3 0.0289797
LRRC1 leucine rich repeat containing 1 0.0288486
MALT1 MALT1 paracaspase 0.0287546
ID2 inhibitor of DNA binding 2, dominant negative helix-loop-helix protein 0.0285841
DARS1 aspartyl-tRNA synthetase 1 0.0284194
WSB1 WD repeat and SOCS box containing 1 0.0279809
RPS2 ribosomal protein S2 0.0276672
PTK2 protein tyrosine kinase 2 0.0276596
KDM4C lysine (K)-specific demethylase 4C 0.0272766
DLG1 discs, large homolog 1 (Drosophila) 0.027044
RPL3 ribosomal protein L3 0.0269756
CDK8 cyclin-dependent kinase 8 0.0269378
ARHGAP21 Rho GTPase activating protein 21 0.0267598
MXI1 MAX interactor 1, dimerization protein 0.0266922
ABAT 4-aminobutyrate aminotransferase 0.0262707
MIMS1 mitochondrial inner membrane scaffold 1 0.0262427
EGLN1 egl-9 family hypoxia-inducible factor 1 0.0261764
GPAM glycerol-3-phosphate acyltransferase, mitochondrial 0.0261516
TRIM26 tripartite motif containing 26 0.0261029
ARID2 AT rich interactive domain 2 (ARID, RFX-like) 0.0260046
ACTR3 ARP3 actin-related protein 3 homolog (yeast) 0.0259467
SYBU syntabulin (syntaxin-interacting) 0.0259467
MALRD1 MAM and LDL receptor class A domain containing 1 0.0259282
ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 0.0258883
MAP3K2 mitogen-activated protein kinase kinase kinase 2 0.0256152

decreased expression

Symbol Name Standardized Value
IGF2 insulin-like growth factor 2 -0.25979
SERPINA1 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 -0.112486
IGFBP1 insulin-like growth factor binding protein 1 -0.0935259
SERPINA3 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 -0.084583
LOC112694756 uncharaterized LOC112694756 -0.0744758
SLC38A2 solute carrier family 38, member 2 -0.0655195
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0634318
PLCB1 phospholipase C, beta 1 (phosphoinositide-specific) -0.0602306
FARP1 FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived) -0.051198
RPS6 ribosomal protein S6 -0.0484839
TIMP1 TIMP metallopeptidase inhibitor 1 -0.0460475
EGR1 early growth response 1 -0.0460251
NKD1 naked cuticle homolog 1 (Drosophila) -0.0442045
RPL38 ribosomal protein L38 -0.0434913
ROCK2 Rho-associated, coiled-coil containing protein kinase 2 -0.0429636
APOA2 apolipoprotein A-II -0.0429412
EEF2 eukaryotic translation elongation factor 2 -0.042187
PDLIM5 PDZ and LIM domain 5 -0.0417964
TNFSF14 tumor necrosis factor (ligand) superfamily, member 14 -0.0416655
ICAM1 intercellular adhesion molecule 1 -0.0411635
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0405114
A2M alpha-2-macroglobulin -0.0384059
RPL23 ribosomal protein L23 -0.0376456
FOXP1 forkhead box P1 -0.0369021
AGO2 argonaute RISC catalytic component 2 -0.0354711
MT2A metallothionein 2A -0.0341589
TMSB10 thymosin beta 10 -0.0340415
SRRM2 serine/arginine repetitive matrix 2 -0.0329739
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.032868
RPS4X ribosomal protein S4, X-linked -0.0324188
LDHA lactate dehydrogenase A -0.032064
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 -0.031301
MCL1 myeloid cell leukemia 1 -0.0306983
MBNL2 muscleblind-like splicing regulator 2 -0.0306936
UBASH3B ubiquitin associated and SH3 domain containing B -0.0306143
PEG3 paternally expressed 3 -0.0296398
ITFG1 integrin alpha FG-GAP repeat containing 1 -0.0292552
RPLP0 ribosomal protein, large, P0 -0.029138
RPL28 ribosomal protein L28 -0.0289927
RPL34 ribosomal protein L34 -0.0287372
RPL35A ribosomal protein L35a -0.0286498
HMGA1 high mobility group AT-hook 1 -0.0276089
RBM25 RNA binding motif protein 25 -0.027326
RNF213 ring finger protein 213 -0.0271777
SHB Src homology 2 domain containing adaptor protein B -0.0271552
DHRS2 dehydrogenase/reductase (SDR family) member 2 -0.0270986
MT1X metallothionein 1X -0.0270262
TAPBP TAP binding protein (tapasin) -0.026839
ESF1 ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae) -0.0265777
KPNB1 karyopherin (importin) beta 1 -0.0261742
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 -0.026075
RPLP1 ribosomal protein, large, P1 -0.0258812
CAP1 CAP, adenylate cyclase-associated protein 1 (yeast) -0.0253861
SMYD3 SET and MYND domain containing 3 -0.025386
GSE1 Gse1 coiled-coil protein -0.025227
UBC ubiquitin C -0.0245729
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) -0.0244891
LCN2 lipocalin 2 -0.0243398
AHSG alpha-2-HS-glycoprotein -0.0241892
EEPD1 endonuclease/exonuclease/phosphatase family domain containing 1 -0.0241682
RPS27A ribosomal protein S27a -0.0239695
IL32 interleukin 32 -0.0238478
CFB complement factor B -0.0234432
AK1 adenylate kinase 1 -0.0233806
CPEB4 cytoplasmic polyadenylation element binding protein 4 -0.0227631
PPIG peptidylprolyl isomerase G (cyclophilin G) -0.0225653
FBF1 Fas (TNFRSF6) binding factor 1 -0.0225367
BSG basigin (Ok blood group) -0.0223921
AMBP alpha-1-microglobulin/bikunin precursor -0.0222888
LUC7L3 LUC7-like 3 (S. cerevisiae) -0.0222432
DLC1 DLC1 Rho GTPase activating protein -0.0221616
TIMP2 TIMP metallopeptidase inhibitor 2 -0.0221435
UBB ubiquitin B -0.0215505
SMAD3 SMAD family member 3 -0.021494
RAB22A RAB22A, member RAS oncogene family -0.0212988
RPS5 ribosomal protein S5 -0.0212915
B2M beta-2-microglobulin -0.0212641
ZFAND3 zinc finger, AN1-type domain 3 -0.0212138
ABTB3 ankyrin repeat and BTB domain containing 3 -0.02112
ECE1 endothelin converting enzyme 1 -0.0210292
ZNF207 zinc finger protein 207 -0.0209061
RPL5 ribosomal protein L5 -0.0209041
BRD2 bromodomain containing 2 -0.0208889
FTL ferritin, light polypeptide -0.0208688
EPHA2 EPH receptor A2 -0.0207052
SKIL SKI-like proto-oncogene -0.0206812
HLA-B major histocompatibility complex, class I, B -0.0204832
RPL31 ribosomal protein L31 -0.0204648
RPL37 ribosomal protein L37 -0.0203994
ITCH itchy E3 ubiquitin protein ligase -0.0202458
BCL2L1 BCL2-like 1 -0.0201518
ZSWIM5 zinc finger, SWIM-type containing 5 -0.0201195
POTEF POTE ankyrin domain family, member F -0.0200442
DDX18 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 -0.0200263
SBNO1 strawberry notch homolog 1 (Drosophila) -0.0200094
TRIP12 thyroid hormone receptor interactor 12 -0.0199517
EIF3H eukaryotic translation initiation factor 3, subunit H -0.0198198
USP34 ubiquitin specific peptidase 34 -0.0197975
PHF14 PHD finger protein 14 -0.0194008
SPRED2 sprouty-related, EVH1 domain containing 2 -0.0193606