Vitamin K4_NCI-H460 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Vitamin K4 perturbation in NCI-H460 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Vitamin K4_NCI-H460 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
GDA guanine deaminase 0.12637
CDH11 cadherin 11, type 2, OB-cadherin (osteoblast) 0.0926839
TXNRD1 thioredoxin reductase 1 0.0878016
CYP1B1 cytochrome P450, family 1, subfamily B, polypeptide 1 0.0835692
GRAMD1B GRAM domain containing 1B 0.0792077
ASPH aspartate beta-hydroxylase 0.0569869
PCBP3 poly(rC) binding protein 3 0.0433196
EPB41L3 erythrocyte membrane protein band 4.1-like 3 0.0405488
ADAMTS6 ADAM metallopeptidase with thrombospondin type 1 motif, 6 0.0398431
CDC42BPA CDC42 binding protein kinase alpha (DMPK-like) 0.0353722
RAB3B RAB3B, member RAS oncogene family 0.0341794
DST dystonin 0.0338331
COL4A5 collagen, type IV, alpha 5 0.0334488
SPOCK1 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 0.0326471
EFNA5 ephrin-A5 0.0315378
MFF mitochondrial fission factor 0.0297409
NPAS2 neuronal PAS domain protein 2 0.0291411
PTGR1 prostaglandin reductase 1 0.0286362
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.0284509
TMX4 thioredoxin-related transmembrane protein 4 0.0279807
CTSC cathepsin C 0.0272323
SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 0.0265639
SH3KBP1 SH3-domain kinase binding protein 1 0.0259549
CD109 CD109 molecule 0.0254833
TNPO1 transportin 1 0.0254499
GPAT3 glycerol-3-phosphate acyltransferase 3 0.0232676
SLC39A8 solute carrier family 39 (zinc transporter), member 8 0.0232307
SAMD4A sterile alpha motif domain containing 4A 0.0231694
CARD16 caspase recruitment domain family, member 16 0.0220205
VMP1 vacuole membrane protein 1 0.0218417
PTEN phosphatase and tensin homolog 0.0214472
ARHGAP29 Rho GTPase activating protein 29 0.0208297
BCAR3 breast cancer anti-estrogen resistance 3 0.0203307
MAP1B microtubule-associated protein 1B 0.0202341
TUSC3 tumor suppressor candidate 3 0.0200757
PTPN12 protein tyrosine phosphatase, non-receptor type 12 0.0199843
SLFN5 schlafen family member 5 0.0198729
SERPINB2 serpin peptidase inhibitor, clade B (ovalbumin), member 2 0.0198147
NEK7 NIMA-related kinase 7 0.0193715
ZEB2 zinc finger E-box binding homeobox 2 0.0187973
ABCC2 ATP-binding cassette, sub-family C (CFTR/MRP), member 2 0.0186371
NRCAM neuronal cell adhesion molecule 0.0186092
TBC1D8 TBC1 domain family, member 8 (with GRAM domain) 0.0185423
OSMR oncostatin M receptor 0.0185218
IGF2BP3 insulin-like growth factor 2 mRNA binding protein 3 0.0183654
PYGL phosphorylase, glycogen, liver 0.0181756
DISP1 dispatched homolog 1 (Drosophila) 0.0180857
NTN4 netrin 4 0.0178356
SFPQ splicing factor proline/glutamine-rich 0.017814
KYNU kynureninase 0.0174927
BDNF brain-derived neurotrophic factor 0.0170773
ZBTB41 zinc finger and BTB domain containing 41 0.0168138
PDLIM5 PDZ and LIM domain 5 0.0166615
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.0162358
TBC1D5 TBC1 domain family, member 5 0.0159616
MSN moesin 0.0158016
LAMC1 laminin, gamma 1 (formerly LAMB2) 0.0156112
AOPEP aminopeptidase O (putative) 0.0153647
AKR1C1 aldo-keto reductase family 1, member C1 0.0153574
NFE2L2 nuclear factor, erythroid 2-like 2 0.0152359
RABGAP1L RAB GTPase activating protein 1-like 0.015232
DPYD dihydropyrimidine dehydrogenase 0.0150317
EPGN epithelial mitogen 0.0145143
PRKACB protein kinase, cAMP-dependent, catalytic, beta 0.0144864
EXOC6B exocyst complex component 6B 0.0142007
TAF1 TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa 0.0140149
ABCC3 ATP-binding cassette, sub-family C (CFTR/MRP), member 3 0.0137118
CAMSAP2 calmodulin regulated spectrin-associated protein family, member 2 0.0137092
NIBAN2 niban apoptosis regulator 2 0.0134672
CEP112 centrosomal protein 112kDa 0.0133475
ACTR2 ARP2 actin-related protein 2 homolog (yeast) 0.0133422
MT2A metallothionein 2A 0.0133388
PRKAA2 protein kinase, AMP-activated, alpha 2 catalytic subunit 0.0130818
RAPH1 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 0.0130556
WWTR1 WW domain containing transcription regulator 1 0.0129769
MAML3 mastermind-like 3 (Drosophila) 0.0127962
R3HDM2 R3H domain containing 2 0.0126425
ENAH enabled homolog (Drosophila) 0.0125962
ARHGEF12 Rho guanine nucleotide exchange factor (GEF) 12 0.0124995
RBMS2 RNA binding motif, single stranded interacting protein 2 0.0124102
INVS inversin 0.0122831
MAML2 mastermind-like 2 (Drosophila) 0.0121205
APLP2 amyloid beta (A4) precursor-like protein 2 0.0120886
FRMD4B FERM domain containing 4B 0.0120639
PTPRG protein tyrosine phosphatase, receptor type, G 0.0119533
MAN2A1 mannosidase, alpha, class 2A, member 1 0.0115975
TMSB4X thymosin beta 4, X-linked 0.0115434
TNFRSF19 tumor necrosis factor receptor superfamily, member 19 0.0115296
ZBTB38 zinc finger and BTB domain containing 38 0.0114862
FBXL17 F-box and leucine-rich repeat protein 17 0.0114401
HIPK2 homeodomain interacting protein kinase 2 0.0113803
ALPK2 alpha-kinase 2 0.0113564
SEPTIN10 septin 10 0.011335
PHF14 PHD finger protein 14 0.0112208
GNAQ guanine nucleotide binding protein (G protein), q polypeptide 0.011187
LRBA LPS-responsive vesicle trafficking, beach and anchor containing 0.0111566
SLC20A1 solute carrier family 20 (phosphate transporter), member 1 0.0111064
RAB10 RAB10, member RAS oncogene family 0.0110357
MTHFD2L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like 0.0110137
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0110024

decreased expression

Symbol Name Standardized Value
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.210144
PDE4D phosphodiesterase 4D, cAMP-specific -0.161715
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.156454
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.140374
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0970741
PDE3A phosphodiesterase 3A, cGMP-inhibited -0.0888704
FN1 fibronectin 1 -0.0874104
SPAG9 sperm associated antigen 9 -0.0804994
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0553885
CDH13 cadherin 13 -0.0549923
P3H2 prolyl 3-hydroxylase 2 -0.0544189
ZC3HAV1 zinc finger CCCH-type, antiviral 1 -0.0482468
TMSB10 thymosin beta 10 -0.0480217
PTMA prothymosin, alpha -0.0465714
ELL2 elongation factor, RNA polymerase II, 2 -0.0464938
IGFBP3 insulin-like growth factor binding protein 3 -0.0450363
KMT2C lysine (K)-specific methyltransferase 2C -0.0422462
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0415382
ANXA1 annexin A1 -0.0414499
PRKN parkin RBR E3 ubiquitin protein ligase -0.0412895
ESYT2 extended synaptotagmin-like protein 2 -0.0411909
PDGFA platelet-derived growth factor alpha polypeptide -0.0408819
NALF1 NALCN channel auxiliary factor 1 -0.0404741
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase -0.0403822
STC1 stanniocalcin 1 -0.0400485
MORF4L2 mortality factor 4 like 2 -0.0397401
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0377921
PDE10A phosphodiesterase 10A -0.0371568
FNDC3A fibronectin type III domain containing 3A -0.0361697
PM20D1 peptidase M20 domain containing 1 -0.0354551
PGK1 phosphoglycerate kinase 1 -0.0345401
GOLGA4 golgin A4 -0.0341562
KDM3A lysine (K)-specific demethylase 3A -0.0337931
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 -0.0329334
PTPRM protein tyrosine phosphatase, receptor type, M -0.032894
BZW1 basic leucine zipper and W2 domains 1 -0.0325328
WARS1 tryptophanyl-tRNA synthetase 1 -0.0324666
CANX calnexin -0.031892
GBE1 glucan (1,4-alpha-), branching enzyme 1 -0.0318876
TPT1 tumor protein, translationally-controlled 1 -0.0317805
NAP1L1 nucleosome assembly protein 1-like 1 -0.0316481
DGKD diacylglycerol kinase, delta 130kDa -0.0315978
GARS1 glycyl-tRNA synthetase 1 -0.0314494
NUP58 nucleoporin 58 -0.0314451
DNER delta/notch-like EGF repeat containing -0.0309039
GNAS GNAS complex locus -0.030372
LSAMP limbic system-associated membrane protein -0.0301908
NDRG1 N-myc downstream regulated 1 -0.0297142
RPS6 ribosomal protein S6 -0.0296605
WSB1 WD repeat and SOCS box containing 1 -0.0292605
TENT5A terminal nucleotidyltransferase 5A -0.0292513
WDR45B WD repeat domain 45B -0.0289598
DPP10 dipeptidyl-peptidase 10 (non-functional) -0.0288652
HELZ helicase with zinc finger -0.0288616
HILPDA hypoxia inducible lipid droplet-associated -0.0287887
PDIA3 protein disulfide isomerase family A, member 3 -0.0284297
DDIT4 DNA-damage-inducible transcript 4 -0.0283943
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 -0.028369
CXCL8 chemokine (C-X-C motif) ligand 8 -0.0283242
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 -0.0278528
CTBP2 C-terminal binding protein 2 -0.0277135
ADGRD1 adhesion G protein-coupled receptor D1 -0.0275029
SLC2A13 solute carrier family 2 (facilitated glucose transporter), member 13 -0.0272791
CHD1 chromodomain helicase DNA binding protein 1 -0.0271136
PLCB1 phospholipase C, beta 1 (phosphoinositide-specific) -0.026695
RBPJ recombination signal binding protein for immunoglobulin kappa J region -0.0262763
YBX3 Y box binding protein 3 -0.0261864
TRA2A transformer 2 alpha homolog (Drosophila) -0.0260322
RBM39 RNA binding motif protein 39 -0.0258634
SOD2 superoxide dismutase 2, mitochondrial -0.0258587
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) -0.0256503
NR4A1 nuclear receptor subfamily 4, group A, member 1 -0.0256285
ATP1B3 ATPase, Na+/K+ transporting, beta 3 polypeptide -0.0255617
NR4A2 nuclear receptor subfamily 4, group A, member 2 -0.0255532
FNDC3B fibronectin type III domain containing 3B -0.0255507
ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 -0.0250071
COPA coatomer protein complex, subunit alpha -0.0248456
RPLP1 ribosomal protein, large, P1 -0.0248301
SMOC1 SPARC related modular calcium binding 1 -0.024644
LIMCH1 LIM and calponin homology domains 1 -0.0245468
RAB1A RAB1A, member RAS oncogene family -0.0244664
BASP1 brain abundant, membrane attached signal protein 1 -0.0242995
OASL 2'-5'-oligoadenylate synthetase-like -0.0240648
FAM13A family with sequence similarity 13, member A -0.0239818
S100A10 S100 calcium binding protein A10 -0.0238428
FTL ferritin, light polypeptide -0.0237161
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive -0.0236723
NHS Nance-Horan syndrome (congenital cataracts and dental anomalies) -0.0235306
HSPA9 heat shock 70kDa protein 9 (mortalin) -0.0232685
GRB10 growth factor receptor-bound protein 10 -0.0232678
ANXA2 annexin A2 -0.0231136
UBA6 ubiquitin-like modifier activating enzyme 6 -0.0230821
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 -0.0227686
KMT2E lysine (K)-specific methyltransferase 2E -0.0226968
CNOT2 CCR4-NOT transcription complex, subunit 2 -0.022616
RBMS3 RNA binding motif, single stranded interacting protein 3 -0.0224007
EPHA4 EPH receptor A4 -0.0220872
NBEAL1 neurobeachin-like 1 -0.021971
IARS1 isoleucyl-tRNA synthetase 1 -0.021936
LAMA1 laminin, alpha 1 -0.0218833