bacterial Gene Set

Dataset GeneRIF Biological Term Annotations
Category structural or functional annotations
Type biological term
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Genes

396 genes co-occuring with the biological term bacterial in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.

Symbol Name
AADAT aminoadipate aminotransferase
AASDH aminoadipate-semialdehyde dehydrogenase
ABCB1 ATP-binding cassette, sub-family B (MDR/TAP), member 1
ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase
ACADVL acyl-CoA dehydrogenase, very long chain
ACSS2 acyl-CoA synthetase short-chain family member 2
ACTA1 actin, alpha 1, skeletal muscle
ACTC1 actin, alpha, cardiac muscle 1
ADAM10 ADAM metallopeptidase domain 10
ADHFE1 alcohol dehydrogenase, iron containing, 1
ADIPOQ adiponectin, C1Q and collagen domain containing
ADM adrenomedullin
ADORA2B adenosine A2b receptor
ADRB2 adrenoceptor beta 2, surface
ADRBK1 adrenergic, beta, receptor kinase 1
AGER advanced glycosylation end product-specific receptor
AIF1L allograft inflammatory factor 1-like
AIFM2 apoptosis-inducing factor, mitochondrion-associated, 2
AKAP13 A kinase (PRKA) anchor protein 13
AKT1 v-akt murine thymoma viral oncogene homolog 1
ALB albumin
ALPI alkaline phosphatase, intestinal
ANTXR1 anthrax toxin receptor 1
ANTXR2 anthrax toxin receptor 2
ANXA2 annexin A2
APOE apolipoprotein E
APP amyloid beta (A4) precursor protein
AQP4 aquaporin 4
ARTN artemin
ATG16L1 autophagy related 16-like 1 (S. cerevisiae)
ATP6V0C ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c
ATP7B ATPase, Cu++ transporting, beta polypeptide
BCL2 B-cell CLL/lymphoma 2
BIRC5 baculoviral IAP repeat containing 5
BMP2 bone morphogenetic protein 2
BPI bactericidal/permeability-increasing protein
BPIFA1 BPI fold containing family A, member 1
C1QA complement component 1, q subcomponent, A chain
C1QB complement component 1, q subcomponent, B chain
C3 complement component 3
C4BPA complement component 4 binding protein, alpha
C5 complement component 5
C5AR1 complement component 5a receptor 1
C8A complement component 8, alpha polypeptide
C8B complement component 8, beta polypeptide
C8G complement component 8, gamma polypeptide
CALCA calcitonin-related polypeptide alpha
CAMP cathelicidin antimicrobial peptide
CARD9 caspase recruitment domain family, member 9
CARS cysteinyl-tRNA synthetase
CASP1 caspase 1, apoptosis-related cysteine peptidase
CBLB Cbl proto-oncogene B, E3 ubiquitin protein ligase
CCL2 chemokine (C-C motif) ligand 2
CCL5 chemokine (C-C motif) ligand 5
CCR10 chemokine (C-C motif) receptor 10
CCR9 chemokine (C-C motif) receptor 9
CD14 CD14 molecule
CD163 CD163 molecule
CD1B CD1b molecule
CD1D CD1d molecule
CD209 CD209 molecule
CD27 CD27 molecule
CD276 CD276 molecule
CD2AP CD2-associated protein
CD46 CD46 molecule, complement regulatory protein
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group)
CD59 CD59 molecule, complement regulatory protein
CD6 CD6 molecule
CD63 CD63 molecule
CD69 CD69 molecule
CD81 CD81 molecule
CDC42 cell division cycle 42
CDX2 caudal type homeobox 2
CEACAM1 carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)
CEACAM3 carcinoembryonic antigen-related cell adhesion molecule 3
CEACAM5 carcinoembryonic antigen-related cell adhesion molecule 5
CEACAM6 carcinoembryonic antigen-related cell adhesion molecule 6 (non-specific cross reacting antigen)
CFH complement factor H
CFTR cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)
CHI3L1 chitinase 3-like 1 (cartilage glycoprotein-39)
CLDN2 claudin 2
CLEC7A C-type lectin domain family 7, member A
COL1A1 collagen, type I, alpha 1
COL4A3BP collagen, type IV, alpha 3 (Goodpasture antigen) binding protein
COL5A1 collagen, type V, alpha 1
COL6A1 collagen, type VI, alpha 1
CPB2 carboxypeptidase B2 (plasma)
CR1 complement component (3b/4b) receptor 1 (Knops blood group)
CR2 complement component (3d/Epstein Barr virus) receptor 2
CRLS1 cardiolipin synthase 1
CRP C-reactive protein, pentraxin-related
CSF2 colony stimulating factor 2 (granulocyte-macrophage)
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa
CXCL16 chemokine (C-X-C motif) ligand 16
CXCL5 chemokine (C-X-C motif) ligand 5
CXCL8 chemokine (C-X-C motif) ligand 8
CXCR1 chemokine (C-X-C motif) receptor 1
CXCR2 chemokine (C-X-C motif) receptor 2
CYLD cylindromatosis (turban tumor syndrome)
CYP1A1 cytochrome P450, family 1, subfamily A, polypeptide 1
CYP2J2 cytochrome P450, family 2, subfamily J, polypeptide 2
CYP3A5 cytochrome P450, family 3, subfamily A, polypeptide 5
CYTH1 cytohesin 1
DARS2 aspartyl-tRNA synthetase 2, mitochondrial
DCLRE1C DNA cross-link repair 1C
DEFA1 defensin, alpha 1
DEFA1B defensin, alpha 1B
DEFA3 defensin, alpha 3, neutrophil-specific
DEFA5 defensin, alpha 5, Paneth cell-specific
DEFA6 defensin, alpha 6, Paneth cell-specific
DEFB103B defensin, beta 103B
DEFB4A defensin, beta 4A
DMBT1 deleted in malignant brain tumors 1
DNAJA1 DnaJ (Hsp40) homolog, subfamily A, member 1
EDN1 endothelin 1
EGFR epidermal growth factor receptor
ELANE elastase, neutrophil expressed
ELN elastin
ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1
ENTPD3 ectonucleoside triphosphate diphosphohydrolase 3
ETF1 eukaryotic translation termination factor 1
F2RL1 coagulation factor II (thrombin) receptor-like 1
FAIM2 Fas apoptotic inhibitory molecule 2
FAM96A family with sequence similarity 96, member A
FAS Fas cell surface death receptor
FASLG Fas ligand (TNF superfamily, member 6)
FCAR Fc fragment of IgA receptor
FCGR1A Fc fragment of IgG, high affinity Ia, receptor (CD64)
FCGR3B Fc fragment of IgG, low affinity IIIb, receptor (CD16b)
FCN1 ficolin (collagen/fibrinogen domain containing) 1
FCN2 ficolin (collagen/fibrinogen domain containing lectin) 2
FERMT3 fermitin family member 3
FFAR2 free fatty acid receptor 2
FGF2 fibroblast growth factor 2 (basic)
FLG filaggrin
FLT1 fms-related tyrosine kinase 1
FN1 fibronectin 1
FOXO3 forkhead box O3
FOXP3 forkhead box P3
FPR1 formyl peptide receptor 1
FURIN furin (paired basic amino acid cleaving enzyme)
FXYD3 FXYD domain containing ion transport regulator 3
G6PD glucose-6-phosphate dehydrogenase
GABARAPL2 GABA(A) receptor-associated protein-like 2
GAPDH glyceraldehyde-3-phosphate dehydrogenase
GBP1 guanylate binding protein 1, interferon-inducible
GBP2 guanylate binding protein 2, interferon-inducible
GCHFR GTP cyclohydrolase I feedback regulator
GCK glucokinase (hexokinase 4)
GGT1 gamma-glutamyltransferase 1
GJB2 gap junction protein, beta 2, 26kDa
GLCCI1 glucocorticoid induced 1
GNLY granulysin
GP2 glycoprotein 2 (zymogen granule membrane)
GRB14 growth factor receptor-bound protein 14
GRN granulin
GSAP gamma-secretase activating protein
GSN gelsolin
GTPBP3 GTP binding protein 3 (mitochondrial)
HBEGF heparin-binding EGF-like growth factor
HGF hepatocyte growth factor (hepapoietin A; scatter factor)
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)
HLA-B major histocompatibility complex, class I, B
HMGB1 high mobility group box 1
HMOX1 heme oxygenase 1
HP haptoglobin
HSD11B1 hydroxysteroid (11-beta) dehydrogenase 1
HSPA1A heat shock 70kDa protein 1A
HSPD1 heat shock 60kDa protein 1 (chaperonin)
HTT huntingtin
ICAM1 intercellular adhesion molecule 1
IFNA1 interferon, alpha 1
IFNB1 interferon, beta 1, fibroblast
IFNG interferon, gamma
IGH immunoglobulin heavy locus
IL10 interleukin 10
IL12A interleukin 12A
IL12RB1 interleukin 12 receptor, beta 1
IL13 interleukin 13
IL16 interleukin 16
IL17A interleukin 17A
IL18 interleukin 18
IL1A interleukin 1, alpha
IL1B interleukin 1, beta
IL1R1 interleukin 1 receptor, type I
IL1RN interleukin 1 receptor antagonist
IL22 interleukin 22
IL32 interleukin 32
IL33 interleukin 33
IL4 interleukin 4
IL6 interleukin 6
IL6R interleukin 6 receptor
INS insulin
IQGAP1 IQ motif containing GTPase activating protein 1
IRAK1 interleukin-1 receptor-associated kinase 1
IRAK4 interleukin-1 receptor-associated kinase 4
IRF3 interferon regulatory factor 3
ITGA5 integrin, alpha 5 (fibronectin receptor, alpha polypeptide)
ITGA6 integrin, alpha 6
ITGAM integrin, alpha M (complement component 3 receptor 3 subunit)
ITGAV integrin, alpha V
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)
ITGB4 integrin, beta 4
ITLN1 intelectin 1 (galactofuranose binding)
KCNJ2 potassium channel, inwardly rectifying subfamily J, member 2
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1
KLF2 Kruppel-like factor 2
KLF4 Kruppel-like factor 4 (gut)
KMO kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)
KRT4 keratin 4, type II
KRT6A keratin 6A, type II
LAMC2 laminin, gamma 2
LAMP1 lysosomal-associated membrane protein 1
LAMP2 lysosomal-associated membrane protein 2
LARS leucyl-tRNA synthetase
LBP lipopolysaccharide binding protein
LCK LCK proto-oncogene, Src family tyrosine kinase
LCN2 lipocalin 2
LDHA lactate dehydrogenase A
LEP leptin
LETMD1 LETM1 domain containing 1
LGALS9 lectin, galactoside-binding, soluble, 9
LTF lactotransferrin
LY96 lymphocyte antigen 96
MAL mal, T-cell differentiation protein
MAPK1 mitogen-activated protein kinase 1
MAPK14 mitogen-activated protein kinase 14
MAPK3 mitogen-activated protein kinase 3
MAPK8 mitogen-activated protein kinase 8
MARCO macrophage receptor with collagenous structure
MASP2 mannan-binding lectin serine peptidase 2
MAVS mitochondrial antiviral signaling protein
MBL2 mannose-binding lectin (protein C) 2, soluble
MBP myelin basic protein
MCAM melanoma cell adhesion molecule
MCL1 myeloid cell leukemia 1
MIF macrophage migration inhibitory factor (glycosylation-inhibiting factor)
MIR132 microRNA 132
MIR146A microRNA 146a
MIR155 microRNA 155
MIR212 microRNA 212
MIR92B microRNA 92b
MMACHC methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria
MMADHC methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria
MMP2 matrix metallopeptidase 2
MMP8 matrix metallopeptidase 8
MMP9 matrix metallopeptidase 9
MOCS3 molybdenum cofactor synthesis 3
MPO myeloperoxidase
MS4A1 membrane-spanning 4-domains, subfamily A, member 1
MTHFR methylenetetrahydrofolate reductase (NAD(P)H)
MUC1 mucin 1, cell surface associated
MUC16 mucin 16, cell surface associated
MUC4 mucin 4, cell surface associated
MUC7 mucin 7, secreted
MYD88 myeloid differentiation primary response 88
MYOC myocilin, trabecular meshwork inducible glucocorticoid response
MYOD1 myogenic differentiation 1
NAIP NLR family, apoptosis inhibitory protein
NCAM1 neural cell adhesion molecule 1
NEDD8 neural precursor cell expressed, developmentally down-regulated 8
NEU1 sialidase 1 (lysosomal sialidase)
NFKB1 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1
NKRF NFKB repressing factor
NKX3-1 NK3 homeobox 1
NLRC4 NLR family, CARD domain containing 4
NLRP10 NLR family, pyrin domain containing 10
NLRP12 NLR family, pyrin domain containing 12
NLRP3 NLR family, pyrin domain containing 3
NLRP7 NLR family, pyrin domain containing 7
NOD1 nucleotide-binding oligomerization domain containing 1
NOD2 nucleotide-binding oligomerization domain containing 2
NOX5 NADPH oxidase, EF-hand calcium binding domain 5
NR2C2 nuclear receptor subfamily 2, group C, member 2
NUCLEOLIN nucleolin multifunctional protein
OCRL oculocerebrorenal syndrome of Lowe
OSM oncostatin M
PAH phenylalanine hydroxylase
PDCD4 programmed cell death 4 (neoplastic transformation inhibitor)
PGLYRP2 peptidoglycan recognition protein 2
PI3 peptidase inhibitor 3, skin-derived
PIK3CA phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha
PIK3CG phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma
PLA2G2A phospholipase A2, group IIA (platelets, synovial fluid)
PLA2G4A phospholipase A2, group IVA (cytosolic, calcium-dependent)
PLG plasminogen
PNPT1 polyribonucleotide nucleotidyltransferase 1
POLK polymerase (DNA directed) kappa
PON1 paraoxonase 1
PON2 paraoxonase 2
PPBP pro-platelet basic protein (chemokine (C-X-C motif) ligand 7)
PRKACA protein kinase, cAMP-dependent, catalytic, alpha
PRKCA protein kinase C, alpha
PRKCD protein kinase C, delta
PRTN3 proteinase 3
PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)
PTK2 protein tyrosine kinase 2
PTPN22 protein tyrosine phosphatase, non-receptor type 22 (lymphoid)
PUS1 pseudouridylate synthase 1
PYCARD PYD and CARD domain containing
QTRT1 queuine tRNA-ribosyltransferase 1
RAB14 RAB14, member RAS oncogene family
RAPGEF3 Rap guanine nucleotide exchange factor (GEF) 3
RARRES2 retinoic acid receptor responder (tazarotene induced) 2
RBCK1 RanBP-type and C3HC4-type zinc finger containing 1
RBPJ recombination signal binding protein for immunoglobulin kappa J region
REG3A regenerating islet-derived 3 alpha
RELA v-rel avian reticuloendotheliosis viral oncogene homolog A
RGN regucalcin
RHEB Ras homolog enriched in brain
RHOA ras homolog family member A
RIPK1 receptor (TNFRSF)-interacting serine-threonine kinase 1
RIPK2 receptor-interacting serine-threonine kinase 2
RNASEL ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)
RNF5 ring finger protein 5, E3 ubiquitin protein ligase
ROCK1 Rho-associated, coiled-coil containing protein kinase 1
ROCK2 Rho-associated, coiled-coil containing protein kinase 2
RPLP2 ribosomal protein, large, P2
RTN3 reticulon 3
RUVBL1 RuvB-like AAA ATPase 1
S100A12 S100 calcium binding protein A12
S100A7 S100 calcium binding protein A7
S100A8 S100 calcium binding protein A8
S100A9 S100 calcium binding protein A9
S100B S100 calcium binding protein B
SAA1 serum amyloid A1
SACS sacsin molecular chaperone
SERPINA1 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1
SERPINF2 serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2
SFTPA1 surfactant protein A1
SFTPD surfactant protein D
SGK223 homolog of rat pragma of Rnd2
SIGLEC14 sialic acid binding Ig-like lectin 14
SIGLEC5 sialic acid binding Ig-like lectin 5
SIGLEC9 sialic acid binding Ig-like lectin 9
SLC29A1 solute carrier family 29 (equilibrative nucleoside transporter), member 1
SLC37A4 solute carrier family 37 (glucose-6-phosphate transporter), member 4
SLC41A1 solute carrier family 41 (magnesium transporter), member 1
SLC5A8 solute carrier family 5 (sodium/monocarboxylate cotransporter), member 8
SLC7A5 solute carrier family 7 (amino acid transporter light chain, L system), member 5
SLC9A3R2 solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 2
SNCA synuclein, alpha (non A4 component of amyloid precursor)
SOCS1 suppressor of cytokine signaling 1
SOCS3 suppressor of cytokine signaling 3
SOD1 superoxide dismutase 1, soluble
SOD2 superoxide dismutase 2, mitochondrial
SOD3 superoxide dismutase 3, extracellular
STAT1 signal transducer and activator of transcription 1, 91kDa
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor)
STXBP2 syntaxin binding protein 2
TAB2 TGF-beta activated kinase 1/MAP3K7 binding protein 2
TAB3 TGF-beta activated kinase 1/MAP3K7 binding protein 3
TACR1 tachykinin receptor 1
TAP1 transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)
TAP2 transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)
TCL1A T-cell leukemia/lymphoma 1A
TF transferrin
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)
TGFB1 transforming growth factor, beta 1
THBS1 thrombospondin 1
TIMP1 TIMP metallopeptidase inhibitor 1
TIMP2 TIMP metallopeptidase inhibitor 2
TLR1 toll-like receptor 1
TLR10 toll-like receptor 10
TLR2 toll-like receptor 2
TLR3 toll-like receptor 3
TLR4 toll-like receptor 4
TLR5 toll-like receptor 5
TLR6 toll-like receptor 6
TLR7 toll-like receptor 7
TLR8 toll-like receptor 8
TLR9 toll-like receptor 9
TMBIM4 transmembrane BAX inhibitor motif containing 4
TNF tumor necrosis factor
TNFRSF1A tumor necrosis factor receptor superfamily, member 1A
TNNI3 troponin I type 3 (cardiac)
TOP2A topoisomerase (DNA) II alpha 170kDa
TP53 tumor protein p53
TRD T cell receptor delta locus
TREM1 triggering receptor expressed on myeloid cells 1
TREM2 triggering receptor expressed on myeloid cells 2
TRG T cell receptor gamma locus
TRMT61B tRNA methyltransferase 61B
TYMP thymidine phosphorylase
UBE2L3 ubiquitin-conjugating enzyme E2L 3
UBE2N ubiquitin-conjugating enzyme E2N
UCP2 uncoupling protein 2 (mitochondrial, proton carrier)
USP15 ubiquitin specific peptidase 15
VAV2 vav 2 guanine nucleotide exchange factor
VDAC1 voltage-dependent anion channel 1
VEGFA vascular endothelial growth factor A
VKORC1 vitamin K epoxide reductase complex, subunit 1
VTN vitronectin
VWF von Willebrand factor
WARS tryptophanyl-tRNA synthetase
XRCC6 X-ray repair complementing defective repair in Chinese hamster cells 6