bacteroid Gene Set

Dataset TISSUES Text-mining Tissue Protein Expression Evidence Scores
Category structural or functional annotations
Type tissue
Description An irregularly shaped bacterium (as a rhizobium) found especially in root nodules of legumes. (BRENDA Tissue and Enzyme Source Ontology, BTO_0000109)
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Genes

145 proteins co-occuring with the tissue bacteroid in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset.

Symbol Name Standardized Value
ATN1 atrophin 1 2.34465
GLUL glutamate-ammonia ligase 1.78588
NLRX1 NLR family member X1 1.72832
NLRP14 NLR family, pyrin domain containing 14 1.51474
NEGR1 neuronal growth regulator 1 1.48598
CLEC3A C-type lectin domain family 3, member A 1.3604
MDH2 malate dehydrogenase 2, NAD (mitochondrial) 1.35086
CLEC2B C-type lectin domain family 2, member B 1.32913
CLEC10A C-type lectin domain family 10, member A 1.32551
MDH1 malate dehydrogenase 1, NAD (soluble) 1.28906
SETD2 SET domain containing 2 1.26889
LRP3 low density lipoprotein receptor-related protein 3 1.2595
ASNS asparagine synthetase (glutamine-hydrolyzing) 1.22826
PCK2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) 1.22469
SPIN3 spindlin family, member 3 1.22336
PCK1 phosphoenolpyruvate carboxykinase 1 (soluble) 1.21001
TREH trehalase (brush-border membrane glycoprotein) 1.17935
PRODH proline dehydrogenase (oxidase) 1 1.17314
XDH xanthine dehydrogenase 1.15628
BDH1 3-hydroxybutyrate dehydrogenase, type 1 1.13723
IDH2 isocitrate dehydrogenase 2 (NADP+), mitochondrial 1.11995
PRPF40B PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae) 1.09651
CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 1.09341
PYCR1 pyrroline-5-carboxylate reductase 1 1.09164
ACSS2 acyl-CoA synthetase short-chain family member 2 1.09076
MORF4 mortality factor 4 (pseudogene) 1.07353
NOC2L nucleolar complex associated 2 homolog (S. cerevisiae) 1.05193
ALDH5A1 aldehyde dehydrogenase 5 family, member A1 1.04488
NLRC3 NLR family, CARD domain containing 3 1.00152
ANKS1B ankyrin repeat and sterile alpha motif domain containing 1B 1.00022
RBKS ribokinase 0.992814
HMGA2 high mobility group AT-hook 2 0.977616
DCT dopachrome tautomerase 0.969388
NLRP9 NLR family, pyrin domain containing 9 0.95988
NTSR1 neurotensin receptor 1 (high affinity) 0.950393
IDH3G isocitrate dehydrogenase 3 (NAD+) gamma 0.929335
IDH3A isocitrate dehydrogenase 3 (NAD+) alpha 0.908814
IDH3B isocitrate dehydrogenase 3 (NAD+) beta 0.890525
ME2 malic enzyme 2, NAD(+)-dependent, mitochondrial 0.889678
PHGDH phosphoglycerate dehydrogenase 0.876552
ME1 malic enzyme 1, NADP(+)-dependent, cytosolic 0.865999
SCO1 SCO1 cytochrome c oxidase assembly protein 0.835318
BDH2 3-hydroxybutyrate dehydrogenase, type 2 0.82736
CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 0.824013
ALDOA aldolase A, fructose-bisphosphate 0.821921
ME3 malic enzyme 3, NADP(+)-dependent, mitochondrial 0.818576
ZBTB25 zinc finger and BTB domain containing 25 0.813144
PYCR2 pyrroline-5-carboxylate reductase family, member 2 0.812309
NLRC5 NLR family, CARD domain containing 5 0.811891
ACAT1 acetyl-CoA acetyltransferase 1 0.806882
PYCRL pyrroline-5-carboxylate reductase-like 0.803544
OGDH oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) 0.785635
FZR1 fizzy/cell division cycle 20 related 1 (Drosophila) 0.777325
ALAS2 5'-aminolevulinate synthase 2 0.771514
NMS neuromedin S 0.750405
CHDH choline dehydrogenase 0.743389
GOT1 glutamic-oxaloacetic transaminase 1, soluble 0.737206
UGP2 UDP-glucose pyrophosphorylase 2 0.734323
PTDSS2 phosphatidylserine synthase 2 0.720345
IFNE interferon, epsilon 0.711729
MTHFD1 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase 0.70927
NAA15 N(alpha)-acetyltransferase 15, NatA auxiliary subunit 0.700262
GOT1L1 glutamic-oxaloacetic transaminase 1-like 1 0.692493
DNAH8 dynein, axonemal, heavy chain 8 0.683103
GOT2 glutamic-oxaloacetic transaminase 2, mitochondrial 0.682287
ACAA2 acetyl-CoA acyltransferase 2 0.666809
ALAS1 5'-aminolevulinate synthase 1 0.660304
TRIM47 tripartite motif containing 47 0.628697
DECR1 2,4-dienoyl CoA reductase 1, mitochondrial 0.618603
TAS1R1 taste receptor, type 1, member 1 0.61699
CA5A carbonic anhydrase VA, mitochondrial 0.609735
CAT catalase 0.605306
NAGS N-acetylglutamate synthase 0.598469
GNB2L1 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 0.597666
ALDH1B1 aldehyde dehydrogenase 1 family, member B1 0.574816
CS citrate synthase 0.569622
HAO2 hydroxyacid oxidase 2 (long chain) 0.55607
HAO1 hydroxyacid oxidase (glycolate oxidase) 1 0.555274
ATG4C autophagy related 4C, cysteine peptidase 0.548517
SERPINF2 serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2 0.546929
FICD FIC domain containing 0.537812
PSAT1 phosphoserine aminotransferase 1 0.534251
SH2D3A SH2 domain containing 3A 0.53267
EMP2 epithelial membrane protein 2 0.529508
GSS glutathione synthetase 0.523194
GUSB glucuronidase, beta 0.522405
ADSL adenylosuccinate lyase 0.520829
CYP2B6 cytochrome P450, family 2, subfamily B, polypeptide 6 0.51453
VIT vitrin 0.512171
AMT aminomethyltransferase 0.50942
CRNN cornulin 0.508635
FBP1 fructose-1,6-bisphosphatase 1 0.497657
SLC11A2 solute carrier family 11 (proton-coupled divalent metal ion transporter), member 2 0.492182
ALDH3A2 aldehyde dehydrogenase 3 family, member A2 0.477367
SUOX sulfite oxidase 0.47348
HAL histidine ammonia-lyase 0.468824
ALAD aminolevulinate dehydratase 0.468824
ACAA1 acetyl-CoA acyltransferase 1 0.456828
NIN ninein (GSK3B interacting protein) 0.446807
CA5B carbonic anhydrase VB, mitochondrial 0.441042
ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 0.417337
SOD2 superoxide dismutase 2, mitochondrial 0.416195
IMPA1 inositol(myo)-1(or 4)-monophosphatase 1 0.416195
NIT1 nitrilase 1 0.414673
RAB1A RAB1A, member RAS oncogene family 0.413151
GART phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase 0.402901
IRF6 interferon regulatory factor 6 0.394197
SDHA succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 0.392686
LXN latexin 0.386273
MIP major intrinsic protein of lens fiber 0.378748
BCKDHB branched chain keto acid dehydrogenase E1, beta polypeptide 0.371619
LRBA LPS-responsive vesicle trafficking, beach and anchor containing 0.367129
PGD phosphogluconate dehydrogenase 0.361901
ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 0.360409
COL18A1 collagen, type XVIII, alpha 1 0.35334
SHMT2 serine hydroxymethyltransferase 2 (mitochondrial) 0.352227
DMPK dystrophia myotonica-protein kinase 0.350372
KCNJ3 potassium channel, inwardly rectifying subfamily J, member 3 0.342233
CA8 carbonic anhydrase VIII 0.340388
CA14 carbonic anhydrase XIV 0.340388
CCL1 chemokine (C-C motif) ligand 1 0.340019
LPP LIM domain containing preferred translocation partner in lipoma 0.315135
AKAP13 A kinase (PRKA) anchor protein 13 0.314409
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.314409
CA6 carbonic anhydrase VI 0.297089
CA7 carbonic anhydrase VII 0.292793
CA12 carbonic anhydrase XII 0.289939
ALDH1A1 aldehyde dehydrogenase 1 family, member A1 0.286026
SCP2 sterol carrier protein 2 0.285316
PAPSS1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 0.284607
NOL3 nucleolar protein 3 (apoptosis repressor with CARD domain) 0.274045
PFKM phosphofructokinase, muscle 0.271604
MGAM maltase-glucoamylase 0.259929
PTH1R parathyroid hormone 1 receptor 0.252919
AOX1 aldehyde oxidase 1 0.245175
NDUFAB1 NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa 0.235457
CA13 carbonic anhydrase XIII 0.233162
CHKA choline kinase alpha 0.23011
HMBS hydroxymethylbilane synthase 0.227707
FDX1 ferredoxin 1 0.227707
ERN1 endoplasmic reticulum to nucleus signaling 1 0.223419
HK1 hexokinase 1 0.21883
CDIPT CDP-diacylglycerol--inositol 3-phosphatidyltransferase 0.215534
GCLC glutamate-cysteine ligase, catalytic subunit 0.214017
RTN4R reticulon 4 receptor 0.21365