base Gene Set

Dataset GeneRIF Biological Term Annotations
Category structural or functional annotations
Type biological term
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Genes

295 genes co-occuring with the biological term base in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.

Symbol Name
ABCB1 ATP-binding cassette, sub-family B (MDR/TAP), member 1
ABCD1 ATP-binding cassette, sub-family D (ALD), member 1
ACAT1 acetyl-CoA acetyltransferase 1
ACHE acetylcholinesterase (Yt blood group)
ACVRL1 activin A receptor type II-like 1
ADAMTS13 ADAM metallopeptidase with thrombospondin type 1 motif, 13
ADAR adenosine deaminase, RNA-specific
AGO2 argonaute RISC catalytic component 2
AICDA activation-induced cytidine deaminase
ALB albumin
ALG6 ALG6, alpha-1,3-glucosyltransferase
ALKBH1 alkB, alkylation repair homolog 1 (E. coli)
ALOX5 arachidonate 5-lipoxygenase
ANKH ANKH inorganic pyrophosphate transport regulator
APC adenomatous polyposis coli
APEX1 APEX nuclease (multifunctional DNA repair enzyme) 1
APOA1 apolipoprotein A-I
APOBEC3A apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A
APTX aprataxin
AQP4 aquaporin 4
ARL3 ADP-ribosylation factor-like 3
ARX aristaless related homeobox
ATMIN ATM interactor
ATRX alpha thalassemia/mental retardation syndrome X-linked
BAG3 BCL2-associated athanogene 3
BAX BCL2-associated X protein
BBS4 Bardet-Biedl syndrome 4
BDNF brain-derived neurotrophic factor
BPIFA4P BPI fold containing family A, member 4, pseudogene
BRCA1 breast cancer 1, early onset
BTK Bruton agammaglobulinemia tyrosine kinase
CACNA1F calcium channel, voltage-dependent, L type, alpha 1F subunit
CBS cystathionine-beta-synthase
CCM2 cerebral cavernous malformation 2
CCND1 cyclin D1
CCR5 chemokine (C-C motif) receptor 5 (gene/pseudogene)
CD1D CD1d molecule
CDH1 cadherin 1, type 1, E-cadherin (epithelial)
CDKN1A cyclin-dependent kinase inhibitor 1A (p21, Cip1)
CEP162 centrosomal protein 162kDa
CHIA chitinase, acidic
CKAP4 cytoskeleton-associated protein 4
COL18A1 collagen, type XVIII, alpha 1
COL1A1 collagen, type I, alpha 1
COMMD1 copper metabolism (Murr1) domain containing 1
COX3
CRABP2 cellular retinoic acid binding protein 2
CREBBP CREB binding protein
CRYBA1 crystallin, beta A1
CTLA4 cytotoxic T-lymphocyte-associated protein 4
CYBB cytochrome b-245, beta polypeptide
CYP17A1 cytochrome P450, family 17, subfamily A, polypeptide 1
CYP2D6 cytochrome P450, family 2, subfamily D, polypeptide 6
DCK deoxycytidine kinase
DHX9 DEAH (Asp-Glu-Ala-His) box helicase 9
DICER1 dicer 1, ribonuclease type III
DMC1 DNA meiotic recombinase 1
DNM1L dynamin 1-like
DUSP18 dual specificity phosphatase 18
EGFR epidermal growth factor receptor
EIF2AK3 eukaryotic translation initiation factor 2-alpha kinase 3
ELANE elastase, neutrophil expressed
ENAM enamelin
EP300 E1A binding protein p300
ERBB2 erb-b2 receptor tyrosine kinase 2
ERCC1 excision repair cross-complementation group 1
ERCC2 excision repair cross-complementation group 2
ERCC6 excision repair cross-complementation group 6
ESR1 estrogen receptor 1
EXT1 exostosin glycosyltransferase 1
F11 coagulation factor XI
F12 coagulation factor XII (Hageman factor)
F7 coagulation factor VII (serum prothrombin conversion accelerator)
FAM168A family with sequence similarity 168, member A
FANCG Fanconi anemia, complementation group G
FARSB phenylalanyl-tRNA synthetase, beta subunit
FEN1 flap structure-specific endonuclease 1
FGFR3 fibroblast growth factor receptor 3
FKBP10 FK506 binding protein 10, 65 kDa
FMR1 fragile X mental retardation 1
FOXO4 forkhead box O4
FPGT fucose-1-phosphate guanylyltransferase
G6PD glucose-6-phosphate dehydrogenase
GADD45A growth arrest and DNA-damage-inducible, alpha
GAST gastrin
GH1 growth hormone 1
GJA1 gap junction protein, alpha 1, 43kDa
GLI1 GLI family zinc finger 1
GLRA1 glycine receptor, alpha 1
GLUD1 glutamate dehydrogenase 1
GNAS GNAS complex locus
GNS glucosamine (N-acetyl)-6-sulfatase
GP1BA glycoprotein Ib (platelet), alpha polypeptide
GP9 glycoprotein IX (platelet)
HAS2 hyaluronan synthase 2
HES1 hes family bHLH transcription factor 1
HLA-A major histocompatibility complex, class I, A
HLA-B major histocompatibility complex, class I, B
HLA-G major histocompatibility complex, class I, G
HMGA2 high mobility group AT-hook 2
HMGB1 high mobility group box 1
HRAS Harvey rat sarcoma viral oncogene homolog
HSPA1A heat shock 70kDa protein 1A
HTT huntingtin
HUS1 HUS1 checkpoint homolog (S. pombe)
IL19 interleukin 19
IL1B interleukin 1, beta
IL6 interleukin 6
IL7 interleukin 7
ITCH itchy E3 ubiquitin protein ligase
ITGA3 integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)
JAK2 Janus kinase 2
JUN jun proto-oncogene
KCNA2 potassium channel, voltage gated shaker related subfamily A, member 2
KCNQ1 potassium channel, voltage gated KQT-like subfamily Q, member 1
KIR2DL1 killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 1
KIR2DS1 killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 1
KMT2A lysine (K)-specific methyltransferase 2A
KRAS Kirsten rat sarcoma viral oncogene homolog
LAG3 lymphocyte-activation gene 3
LAMA2 laminin, alpha 2
LDLR low density lipoprotein receptor
LGALS14 lectin, galactoside-binding, soluble, 14
LIG1 ligase I, DNA, ATP-dependent
LIG3 ligase III, DNA, ATP-dependent
LMBR1 limb development membrane protein 1
LPL lipoprotein lipase
MAFA v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog A
MAFB v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B
MAGT1 magnesium transporter 1
MAOB monoamine oxidase B
MAPRE1 microtubule-associated protein, RP/EB family, member 1
MAPRE3 microtubule-associated protein, RP/EB family, member 3
MAPT microtubule-associated protein tau
MBD4 methyl-CpG binding domain protein 4
MC1R melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor)
MCM7 minichromosome maintenance complex component 7
MFRP membrane frizzled-related protein
MGMT O-6-methylguanine-DNA methyltransferase
MIP major intrinsic protein of lens fiber
MIR106B microRNA 106b
MIR122 microRNA 122
MIR17 microRNA 17
MIR184 microRNA 184
MITF microphthalmia-associated transcription factor
MKI67 marker of proliferation Ki-67
MMP1 matrix metallopeptidase 1
MPG N-methylpurine-DNA glycosylase
MPZ myelin protein zero
MSH2 mutS homolog 2
MT-ND2 MTND2
MTM1 myotubularin 1
MUTYH mutY homolog
MYH9 myosin, heavy chain 9, non-muscle
ND1
NEDD9 neural precursor cell expressed, developmentally down-regulated 9
NEIL1 nei endonuclease VIII-like 1 (E. coli)
NEIL2 nei endonuclease VIII-like 2 (E. coli)
NEIL3 nei endonuclease VIII-like 3 (E. coli)
NEWENTRY Record to support submission of GeneRIFs for a gene not in Gene (human; man).
NF1 neurofibromin 1
NFKB2 nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100)
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin)
NPR2 natriuretic peptide receptor 2
NPR3 natriuretic peptide receptor 3
NQO1 NAD(P)H dehydrogenase, quinone 1
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)
NSD1 nuclear receptor binding SET domain protein 1
NUCLEOLIN nucleolin multifunctional protein
OGG1 8-oxoguanine DNA glycosylase
OGT O-linked N-acetylglucosamine (GlcNAc) transferase
P2RY12 purinergic receptor P2Y, G-protein coupled, 12
PANK2 pantothenate kinase 2
PARK2 parkin RBR E3 ubiquitin protein ligase
PARP1 poly (ADP-ribose) polymerase 1
PCNA proliferating cell nuclear antigen
PDE4DIP phosphodiesterase 4D interacting protein
PDE6A phosphodiesterase 6A, cGMP-specific, rod, alpha
PDGFRA platelet-derived growth factor receptor, alpha polypeptide
PGR progesterone receptor
PHOX2B paired-like homeobox 2b
PIF1 PIF1 5'-to-3' DNA helicase
PLA2G2A phospholipase A2, group IIA (platelets, synovial fluid)
PLAU plasminogen activator, urokinase
POLA1 polymerase (DNA directed), alpha 1, catalytic subunit
POLB polymerase (DNA directed), beta
POLE polymerase (DNA directed), epsilon, catalytic subunit
POLG polymerase (DNA directed), gamma
POLH polymerase (DNA directed), eta
POLI polymerase (DNA directed) iota
POLK polymerase (DNA directed) kappa
POLL polymerase (DNA directed), lambda
POLQ polymerase (DNA directed), theta
POT1 protection of telomeres 1
PPM1D protein phosphatase, Mg2+/Mn2+ dependent, 1D
PPOX protoporphyrinogen oxidase
PRKAR1A protein kinase, cAMP-dependent, regulatory, type I, alpha
PROS1 protein S (alpha)
PTEN phosphatase and tensin homolog
PTPN11 protein tyrosine phosphatase, non-receptor type 11
PUM1 pumilio RNA-binding family member 1
PUM2 pumilio RNA-binding family member 2
RAB3B RAB3B, member RAS oncogene family
RAD1 RAD1 checkpoint DNA exonuclease
RAD51 RAD51 recombinase
RAD9A RAD9 homolog A (S. pombe)
RB1 retinoblastoma 1
RDH5 retinol dehydrogenase 5 (11-cis/9-cis)
RECQL5 RecQ protein-like 5
RGR retinal G protein coupled receptor
RHO rhodopsin
RNF4 ring finger protein 4
RNR2 RNA, ribosomal cluster 2
RNU4-1 RNA, U4 small nuclear 1
ROBO3 roundabout, axon guidance receptor, homolog 3 (Drosophila)
ROR2 receptor tyrosine kinase-like orphan receptor 2
RP2 retinitis pigmentosa 2 (X-linked recessive)
RPA1 replication protein A1, 70kDa
RPL26 ribosomal protein L26
RPS3 ribosomal protein S3
RS1 retinoschisin 1
SAT1 spermidine/spermine N1-acetyltransferase 1
SCN1A sodium channel, voltage gated, type I alpha subunit
SCN5A sodium channel, voltage gated, type V alpha subunit
SEC14L3 SEC14-like 3 (S. cerevisiae)
SEPN1 selenoprotein N, 1
SERPINA5 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5
SERPINC1 serpin peptidase inhibitor, clade C (antithrombin), member 1
SIL1 SIL1 nucleotide exchange factor
SLC25A32 solute carrier family 25 (mitochondrial folate carrier), member 32
SLC26A4 solute carrier family 26 (anion exchanger), member 4
SLC28A3 solute carrier family 28 (concentrative nucleoside transporter), member 3
SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1
SLC4A11 solute carrier family 4, sodium borate transporter, member 11
SLC6A3 solute carrier family 6 (neurotransmitter transporter), member 3
SLC9A3R1 solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 1
SLC9A3R2 solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 2
SLC9A6 solute carrier family 9, subfamily A (NHE6, cation proton antiporter 6), member 6
SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
SMN1 survival of motor neuron 1, telomeric
SMN2 survival of motor neuron 2, centromeric
SMPD1 sphingomyelin phosphodiesterase 1, acid lysosomal
SMUG1 single-strand-selective monofunctional uracil-DNA glycosylase 1
SNRNP48 small nuclear ribonucleoprotein 48kDa (U11/U12)
SNRPA small nuclear ribonucleoprotein polypeptide A
SNRPE small nuclear ribonucleoprotein polypeptide E
SOD1 superoxide dismutase 1, soluble
SPATA2 spermatogenesis associated 2
SPHK1 sphingosine kinase 1
SPINK1 serine peptidase inhibitor, Kazal type 1
SSBP1 single-stranded DNA binding protein 1, mitochondrial
STIL SCL/TAL1 interrupting locus
STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase
TARBP2 TAR (HIV-1) RNA binding protein 2
TDG thymine-DNA glycosylase
TDP1 tyrosyl-DNA phosphodiesterase 1
TFAM transcription factor A, mitochondrial
TGFB1 transforming growth factor, beta 1
TGS1 trimethylguanosine synthase 1
THAP1 THAP domain containing, apoptosis associated protein 1
TIMP3 TIMP metallopeptidase inhibitor 3
TLL1 tolloid-like 1
TOP1 topoisomerase (DNA) I
TP53 tumor protein p53
TPM2 tropomyosin 2 (beta)
TRG T cell receptor gamma locus
TRIM37 tripartite motif containing 37
TTC21B tetratricopeptide repeat domain 21B
TUBB3 tubulin, beta 3 class III
TXN thioredoxin
TYMS thymidylate synthetase
UCK2 uridine-cytidine kinase 2
UGT1A9 UDP glucuronosyltransferase 1 family, polypeptide A9
UNG uracil-DNA glycosylase
USH1G Usher syndrome 1G (autosomal recessive)
UTRN utrophin
VAV1 vav 1 guanine nucleotide exchange factor
VCP valosin containing protein
VEGFA vascular endothelial growth factor A
VPS13B vacuolar protein sorting 13 homolog B (yeast)
VWF von Willebrand factor
WARS tryptophanyl-tRNA synthetase
WAS Wiskott-Aldrich syndrome
WFS1 Wolfram syndrome 1 (wolframin)
WRN Werner syndrome, RecQ helicase-like
WT1 Wilms tumor 1
WWP1 WW domain containing E3 ubiquitin protein ligase 1
WWP2 WW domain containing E3 ubiquitin protein ligase 2
XPC xeroderma pigmentosum, complementation group C
XRCC1 X-ray repair complementing defective repair in Chinese hamster cells 1
XRCC3 X-ray repair complementing defective repair in Chinese hamster cells 3
YBX1 Y box binding protein 1
ZBTB7B zinc finger and BTB domain containing 7B
ZFYVE9 zinc finger, FYVE domain containing 9