basic Gene Set

Dataset GeneRIF Biological Term Annotations
Category structural or functional annotations
Type biological term
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Genes

345 genes co-occuring with the biological term basic in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.

Symbol Name
ABCB1 ATP-binding cassette, sub-family B (MDR/TAP), member 1
ABCC1 ATP-binding cassette, sub-family C (CFTR/MRP), member 1
ABCE1 ATP-binding cassette, sub-family E (OABP), member 1
ABCG2 ATP-binding cassette, sub-family G (WHITE), member 2 (Junior blood group)
ACADVL acyl-CoA dehydrogenase, very long chain
ACTA1 actin, alpha 1, skeletal muscle
ADAT2 adenosine deaminase, tRNA-specific 2
ADORA2A adenosine A2a receptor
AFM afamin
AGER advanced glycosylation end product-specific receptor
AGT angiotensinogen (serpin peptidase inhibitor, clade A, member 8)
AKT1 v-akt murine thymoma viral oncogene homolog 1
AKT2 v-akt murine thymoma viral oncogene homolog 2
ALB albumin
ALOX5 arachidonate 5-lipoxygenase
ALX4 ALX homeobox 4
ANG angiogenin, ribonuclease, RNase A family, 5
ANKS1B ankyrin repeat and sterile alpha motif domain containing 1B
AP2M1 adaptor-related protein complex 2, mu 1 subunit
APEX1 APEX nuclease (multifunctional DNA repair enzyme) 1
APOBEC3C apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C
APOE apolipoprotein E
APP amyloid beta (A4) precursor protein
AQP1 aquaporin 1 (Colton blood group)
ATAT1 alpha tubulin acetyltransferase 1
ATR ATR serine/threonine kinase
B4GALT7 xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7
BACE1 beta-site APP-cleaving enzyme 1
BCL2L1 BCL2-like 1
BGLAP bone gamma-carboxyglutamate (gla) protein
BHLHE40 basic helix-loop-helix family, member e40
BMP4 bone morphogenetic protein 4
BPIFA1 BPI fold containing family A, member 1
BPY2 basic charge, Y-linked, 2
BRAF B-Raf proto-oncogene, serine/threonine kinase
C1QTNF3 C1q and tumor necrosis factor related protein 3
CA9 carbonic anhydrase IX
CAMP cathelicidin antimicrobial peptide
CASK calcium/calmodulin-dependent serine protein kinase (MAGUK family)
CASP14 caspase 14, apoptosis-related cysteine peptidase
CCL21 chemokine (C-C motif) ligand 21
CCL5 chemokine (C-C motif) ligand 5
CD247 CD247 molecule
CD300A CD300a molecule
CD38 CD38 molecule
CD3D CD3d molecule, delta (CD3-TCR complex)
CD3E CD3e molecule, epsilon (CD3-TCR complex)
CD3G CD3g molecule, gamma (CD3-TCR complex)
CD4 CD4 molecule
CD44 CD44 molecule (Indian blood group)
CDC42 cell division cycle 42
CDH1 cadherin 1, type 1, E-cadherin (epithelial)
CDH2 cadherin 2, type 1, N-cadherin (neuronal)
CDKN1A cyclin-dependent kinase inhibitor 1A (p21, Cip1)
CDKN1B cyclin-dependent kinase inhibitor 1B (p27, Kip1)
CDKN2A cyclin-dependent kinase inhibitor 2A
CDX2 caudal type homeobox 2
CEBPE CCAAT/enhancer binding protein (C/EBP), epsilon
CFLAR CASP8 and FADD-like apoptosis regulator
CFTR cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)
CHGA chromogranin A
CHP2 calcineurin-like EF-hand protein 2
CHRNA4 cholinergic receptor, nicotinic, alpha 4 (neuronal)
CLCA1 chloride channel accessory 1
CLCA4 chloride channel accessory 4
CLDN1 claudin 1
CLDN4 claudin 4
COL18A1 collagen, type XVIII, alpha 1
COL1A1 collagen, type I, alpha 1
CPB2 carboxypeptidase B2 (plasma)
CPLX1 complexin 1
CREB1 cAMP responsive element binding protein 1
CRTC1 CREB regulated transcription coactivator 1
CRYAA crystallin, alpha A
CRYAB crystallin, alpha B
CST3 cystatin C
CTGF connective tissue growth factor
CTSB cathepsin B
CTSG cathepsin G
CTSK cathepsin K
CUL1 cullin 1
CUL3 cullin 3
CXCL12 chemokine (C-X-C motif) ligand 12
CXCL16 chemokine (C-X-C motif) ligand 16
CXCR4 chemokine (C-X-C motif) receptor 4
CYP11A1 cytochrome P450, family 11, subfamily A, polypeptide 1
CYP2D6 cytochrome P450, family 2, subfamily D, polypeptide 6
DAPK1 death-associated protein kinase 1
DAZ1 deleted in azoospermia 1
DFFA DNA fragmentation factor, 45kDa, alpha polypeptide
DGKB diacylglycerol kinase, beta 90kDa
DGKQ diacylglycerol kinase, theta 110kDa
DLL4 delta-like 4 (Drosophila)
DLX6 distal-less homeobox 6
DMD dystrophin
DPP4 dipeptidyl-peptidase 4
DRD1 dopamine receptor D1
DRD2 dopamine receptor D2
EDN1 endothelin 1
EFNB2 ephrin-B2
EGF epidermal growth factor
EGFR epidermal growth factor receptor
EIF4G1 eukaryotic translation initiation factor 4 gamma, 1
EMD emerin
F10 coagulation factor X
F11 coagulation factor XI
F11R F11 receptor
F2 coagulation factor II (thrombin)
F8 coagulation factor VIII, procoagulant component
FADD Fas (TNFRSF6)-associated via death domain
FEN1 flap structure-specific endonuclease 1
FGF2 fibroblast growth factor 2 (basic)
FGFR1 fibroblast growth factor receptor 1
FGFR2 fibroblast growth factor receptor 2
FGFR3 fibroblast growth factor receptor 3
FGFR4 fibroblast growth factor receptor 4
FKBP3 FK506 binding protein 3, 25kDa
FLG filaggrin
FMOD fibromodulin
FMR1 fragile X mental retardation 1
FOS FBJ murine osteosarcoma viral oncogene homolog
FOXE1 forkhead box E1
FURIN furin (paired basic amino acid cleaving enzyme)
GAD1 glutamate decarboxylase 1 (brain, 67kDa)
GAD2 glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)
GAS2L1 growth arrest-specific 2 like 1
GAS6 growth arrest-specific 6
GATA1 GATA binding protein 1 (globin transcription factor 1)
GCH1 GTP cyclohydrolase 1
GCK glucokinase (hexokinase 4)
GDNF glial cell derived neurotrophic factor
GFAP glial fibrillary acidic protein
GH1 growth hormone 1
GKN1 gastrokine 1
GLRA1 glycine receptor, alpha 1
GLRA3 glycine receptor, alpha 3
GLS2 glutaminase 2 (liver, mitochondrial)
GLUL glutamate-ammonia ligase
GNAQ guanine nucleotide binding protein (G protein), q polypeptide
GNE glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
GNL3 guanine nucleotide binding protein-like 3 (nucleolar)
GOLGA3 golgin A3
GP6 glycoprotein VI (platelet)
GPR15 G protein-coupled receptor 15
GPR17 G protein-coupled receptor 17
GTF2B general transcription factor IIB
GZMA granzyme A (granzyme 1, cytotoxic T-lymphocyte-associated serine esterase 3)
HCFC1 host cell factor C1
HDAC1 histone deacetylase 1
HECTD1 HECT domain containing E3 ubiquitin protein ligase 1
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)
HLA-B major histocompatibility complex, class I, B
HLA-G major histocompatibility complex, class I, G
HMGA2 high mobility group AT-hook 2
HMGB1 high mobility group box 1
HOXB7 homeobox B7
HP haptoglobin
HSPA2 heat shock 70kDa protein 2
ICAM1 intercellular adhesion molecule 1
ID1 inhibitor of DNA binding 1, dominant negative helix-loop-helix protein
ID2 inhibitor of DNA binding 2, dominant negative helix-loop-helix protein
IFT74 intraflagellar transport 74
IFT81 intraflagellar transport 81
IGFBP3 insulin-like growth factor binding protein 3
IL1A interleukin 1, alpha
IL1B interleukin 1, beta
IL2 interleukin 2
IL2RA interleukin 2 receptor, alpha
IL4 interleukin 4
IL5 interleukin 5
IL6 interleukin 6
IPO5 importin 5
IRF3 interferon regulatory factor 3
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)
JAK2 Janus kinase 2
JUN jun proto-oncogene
KAT2B K(lysine) acetyltransferase 2B
KAT5 K(lysine) acetyltransferase 5
KCMF1 potassium channel modulatory factor 1
KCND3 potassium channel, voltage gated Shal related subfamily D, member 3
KCNMB4 potassium channel subfamily M regulatory beta subunit 4
KIN Kin17 DNA and RNA binding protein
KLF1 Kruppel-like factor 1 (erythroid)
KLF15 Kruppel-like factor 15
KLF9 Kruppel-like factor 9
LGALS3 lectin, galactoside-binding, soluble, 3
LGMN legumain
LILRA4 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 4
LPAR1 lysophosphatidic acid receptor 1
LRRK2 leucine-rich repeat kinase 2
LTF lactotransferrin
LY96 lymphocyte antigen 96
M6PR mannose-6-phosphate receptor (cation dependent)
MAF v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog
MAOA monoamine oxidase A
MAP3K12 mitogen-activated protein kinase kinase kinase 12
MAPK8 mitogen-activated protein kinase 8
MBL2 mannose-binding lectin (protein C) 2, soluble
MBP myelin basic protein
MCAM melanoma cell adhesion molecule
MEN1 multiple endocrine neoplasia I
MIR145 microRNA 145
MIR196A1 microRNA 196a-1
MIR196A2 microRNA 196a-2
MITF microphthalmia-associated transcription factor
MMP1 matrix metallopeptidase 1
MMP2 matrix metallopeptidase 2
MMP3 matrix metallopeptidase 3
MOBP myelin-associated oligodendrocyte basic protein
MPO myeloperoxidase
MSH6 mutS homolog 6
MUTYH mutY homolog
MXD1 MAX dimerization protein 1
MYC v-myc avian myelocytomatosis viral oncogene homolog
MYF5 myogenic factor 5
MYF6 myogenic factor 6 (herculin)
MYOD1 myogenic differentiation 1
NANOG Nanog homeobox
NCF1C neutrophil cytosolic factor 1C pseudogene
NCF2 neutrophil cytosolic factor 2
NCR1 natural cytotoxicity triggering receptor 1
NEDD8 neural precursor cell expressed, developmentally down-regulated 8
NEUROD1 neuronal differentiation 1
NEUROD6 neuronal differentiation 6
NEUROG1 neurogenin 1
NEUROG3 neurogenin 3
NEWENTRY Record to support submission of GeneRIFs for a gene not in Gene (human; man).
NF2 neurofibromin 2 (merlin)
NFKB1 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1
NLRP3 NLR family, pyrin domain containing 3
NOD1 nucleotide-binding oligomerization domain containing 1
NOTCH1 notch 1
NR0B2 nuclear receptor subfamily 0, group B, member 2
NR2C2 nuclear receptor subfamily 2, group C, member 2
NRP2 neuropilin 2
NSD1 nuclear receptor binding SET domain protein 1
NTRK2 neurotrophic tyrosine kinase, receptor, type 2
OGG1 8-oxoguanine DNA glycosylase
OMD osteomodulin
OPTN optineurin
ORAI1 ORAI calcium release-activated calcium modulator 1
PADI2 peptidyl arginine deiminase, type II
PAK1 p21 protein (Cdc42/Rac)-activated kinase 1
PAPPA pregnancy-associated plasma protein A, pappalysin 1
PCSK5 proprotein convertase subtilisin/kexin type 5
PCSK9 proprotein convertase subtilisin/kexin type 9
PIAS1 protein inhibitor of activated STAT, 1
PIK3CG phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma
PIN1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1
PIN4 peptidylprolyl cis/trans isomerase, NIMA-interacting 4
PLA2G4A phospholipase A2, group IVA (cytosolic, calcium-dependent)
PLAU plasminogen activator, urokinase
PLAUR plasminogen activator, urokinase receptor
PLD2 phospholipase D2
PLP1 proteolipid protein 1
PML promyelocytic leukemia
PMVK phosphomevalonate kinase
POSTN periostin, osteoblast specific factor
PPARG peroxisome proliferator-activated receptor gamma
PPBP pro-platelet basic protein (chemokine (C-X-C motif) ligand 7)
PPP1R15A protein phosphatase 1, regulatory subunit 15A
PPP2R5D protein phosphatase 2, regulatory subunit B', delta
PRG2 proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein)
PRKCA protein kinase C, alpha
PRMT5 protein arginine methyltransferase 5
PRMT6 protein arginine methyltransferase 6
PROC protein C (inactivator of coagulation factors Va and VIIIa)
PROK1 prokineticin 1
PRPF3 pre-mRNA processing factor 3
PRSS3 protease, serine, 3
PRSS8 protease, serine, 8
PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)
PTH1R parathyroid hormone 1 receptor
PTHLH parathyroid hormone-like hormone
PTPRZ1 protein tyrosine phosphatase, receptor-type, Z polypeptide 1
PTTG1 pituitary tumor-transforming 1
QKI QKI, KH domain containing, RNA binding
RAD9A RAD9 homolog A (S. pombe)
RB1 retinoblastoma 1
RBBP5 retinoblastoma binding protein 5
RCAN1 regulator of calcineurin 1
REG4 regenerating islet-derived family, member 4
RELA v-rel avian reticuloendotheliosis viral oncogene homolog A
RHOG ras homolog family member G
RHOQ ras homolog family member Q
RIPK2 receptor-interacting serine-threonine kinase 2
RNASE1 ribonuclease, RNase A family, 1 (pancreatic)
RP9 retinitis pigmentosa 9 (autosomal dominant)
RPL7 ribosomal protein L7
RPS3 ribosomal protein S3
RUNX2 runt-related transcription factor 2
SAA1 serum amyloid A1
SCG2 secretogranin II
SCGN secretagogin, EF-hand calcium binding protein
SEC23IP SEC23 interacting protein
SERPINA1 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1
SERPINA10 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10
SERPIND1 serpin peptidase inhibitor, clade D (heparin cofactor), member 1
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1
SIAH1 siah E3 ubiquitin protein ligase 1
SIK1 salt-inducible kinase 1
SLC15A1 solute carrier family 15 (oligopeptide transporter), member 1
SLC25A29 solute carrier family 25 (mitochondrial carnitine/acylcarnitine carrier), member 29
SLC46A1 solute carrier family 46 (folate transporter), member 1
SLC6A4 solute carrier family 6 (neurotransmitter transporter), member 4
SLC9A1 solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1
SLC9A6 solute carrier family 9, subfamily A (NHE6, cation proton antiporter 6), member 6
SOD1 superoxide dismutase 1, soluble
SOST sclerostin
SP1 Sp1 transcription factor
SP2 Sp2 transcription factor
SPHK1 sphingosine kinase 1
SPI1 Spi-1 proto-oncogene
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor)
STIM1 stromal interaction molecule 1
STMN1 stathmin 1
SULF1 sulfatase 1
SUMO2 small ubiquitin-like modifier 2
TCF23 transcription factor 23
TCF3 transcription factor 3
TF transferrin
TGFB1 transforming growth factor, beta 1
TIMP3 TIMP metallopeptidase inhibitor 3
TOLLIP toll interacting protein
TOP1 topoisomerase (DNA) I
TP53 tumor protein p53
TPH1 tryptophan hydroxylase 1
TPH2 tryptophan hydroxylase 2
TPM1 tropomyosin 1 (alpha)
TPPP tubulin polymerization promoting protein
TRPA1 transient receptor potential cation channel, subfamily A, member 1
TRRAP transformation/transcription domain-associated protein
TTR transthyretin
TWIST1 twist family bHLH transcription factor 1
TXNDC5 thioredoxin domain containing 5 (endoplasmic reticulum)
UBR5 ubiquitin protein ligase E3 component n-recognin 5
USB1 U6 snRNA biogenesis 1
USF1 upstream transcription factor 1
UTP20 UTP20, small subunit (SSU) processome component, homolog (yeast)
VCAN versican
VDAC1 voltage-dependent anion channel 1
VEGFA vascular endothelial growth factor A
VTN vitronectin
ZG16 zymogen granule protein 16
ZG16B zymogen granule protein 16B