| Dataset | CMAP Signatures of Differentially Expressed Genes for Small Molecules |
| Category | transcriptomics |
| Type | small molecule perturbation |
| Description | small molecule perturbation identified as [small molecule name]-[perturbation ID] (ChIP-X Enrichment Analysis) |
| Similar Terms | |
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200 genes differentially expressed following the berberine-1778 small molecule perturbation from the CMAP Signatures of Differentially Expressed Genes for Small Molecules dataset.
| Symbol | Name |
|---|---|
| ABHD2 | abhydrolase domain containing 2 |
| ACAP1 | ArfGAP with coiled-coil, ankyrin repeat and PH domains 1 |
| ADCYAP1 | adenylate cyclase activating polypeptide 1 (pituitary) |
| APOBEC3C | apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C |
| APOC1 | apolipoprotein C-I |
| ARHGAP35 | Rho GTPase activating protein 35 |
| ARMC7 | armadillo repeat containing 7 |
| ARR3 | arrestin 3, retinal (X-arrestin) |
| ARVCF | armadillo repeat gene deleted in velocardiofacial syndrome |
| ASB13 | ankyrin repeat and SOCS box containing 13 |
| BICC1 | BicC family RNA binding protein 1 |
| C1QTNF9B-AS1 | C1QTNF9B antisense RNA 1 |
| C6 | complement component 6 |
| CEACAM3 | carcinoembryonic antigen-related cell adhesion molecule 3 |
| COL7A1 | collagen, type VII, alpha 1 |
| COL8A2 | collagen, type VIII, alpha 2 |
| COL9A2 | collagen, type IX, alpha 2 |
| CRCP | CGRP receptor component |
| CREB3 | cAMP responsive element binding protein 3 |
| CUX1 | cut-like homeobox 1 |
| DAB2 | Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila) |
| DEF8 | differentially expressed in FDCP 8 homolog (mouse) |
| DNAJC4 | DnaJ (Hsp40) homolog, subfamily C, member 4 |
| DST | dystonin |
| DYSF | dysferlin |
| EPM2A | epilepsy, progressive myoclonus type 2A, Lafora disease (laforin) |
| FLOT1 | flotillin 1 |
| GADD45GIP1 | growth arrest and DNA-damage-inducible, gamma interacting protein 1 |
| GLRA2 | glycine receptor, alpha 2 |
| GNB1L | guanine nucleotide binding protein (G protein), beta polypeptide 1-like |
| HIGD1B | HIG1 hypoxia inducible domain family, member 1B |
| HIST1H2BI | histone cluster 1, H2bi |
| HPN | hepsin |
| IRS2 | insulin receptor substrate 2 |
| ITGA10 | integrin, alpha 10 |
| ITGB5 | integrin, beta 5 |
| ITPR3 | inositol 1,4,5-trisphosphate receptor, type 3 |
| JUP | junction plakoglobin |
| KDM5C | lysine (K)-specific demethylase 5C |
| LPAR3 | lysophosphatidic acid receptor 3 |
| LSM14B | LSM14B, SCD6 homolog B (S. cerevisiae) |
| LTB4R | leukotriene B4 receptor |
| LY6G6C | lymphocyte antigen 6 complex, locus G6C |
| MAML3 | mastermind-like 3 (Drosophila) |
| MAPK8IP2 | mitogen-activated protein kinase 8 interacting protein 2 |
| MCM3AP | minichromosome maintenance complex component 3 associated protein |
| METTL7A | methyltransferase like 7A |
| MIIP | migration and invasion inhibitory protein |
| MPV17 | MpV17 mitochondrial inner membrane protein |
| MTMR3 | myotubularin related protein 3 |
| NCOA3 | nuclear receptor coactivator 3 |
| NR6A1 | nuclear receptor subfamily 6, group A, member 1 |
| OR10J1 | olfactory receptor, family 10, subfamily J, member 1 |
| OR2C1 | olfactory receptor, family 2, subfamily C, member 1 |
| OR2S2 | olfactory receptor, family 2, subfamily S, member 2 (gene/pseudogene) |
| OSBPL3 | oxysterol binding protein-like 3 |
| PADI1 | peptidyl arginine deiminase, type I |
| PCYT1B | phosphate cytidylyltransferase 1, choline, beta |
| PDK2 | pyruvate dehydrogenase kinase, isozyme 2 |
| PICK1 | protein interacting with PRKCA 1 |
| PIPOX | pipecolic acid oxidase |
| PLA2G6 | phospholipase A2, group VI (cytosolic, calcium-independent) |
| PLTP | phospholipid transfer protein |
| PRR4 | proline rich 4 (lacrimal) |
| PRRG2 | proline rich Gla (G-carboxyglutamic acid) 2 |
| PSG4 | pregnancy specific beta-1-glycoprotein 4 |
| PSG6 | pregnancy specific beta-1-glycoprotein 6 |
| PSMD9 | proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 |
| PTGDS | prostaglandin D2 synthase 21kDa (brain) |
| RAMP3 | receptor (G protein-coupled) activity modifying protein 3 |
| RANBP3 | RAN binding protein 3 |
| RGS12 | regulator of G-protein signaling 12 |
| RNASE1 | ribonuclease, RNase A family, 1 (pancreatic) |
| RND3 | Rho family GTPase 3 |
| RUNDC3A | RUN domain containing 3A |
| SARDH | sarcosine dehydrogenase |
| SDC1 | syndecan 1 |
| SGTA | small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha |
| SIRT3 | sirtuin 3 |
| SKAP1 | src kinase associated phosphoprotein 1 |
| SLC22A14 | solute carrier family 22, member 14 |
| SMUG1 | single-strand-selective monofunctional uracil-DNA glycosylase 1 |
| SRSF1 | serine/arginine-rich splicing factor 1 |
| TAF1 | TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa |
| TCAF1 | TRPM8 channel-associated factor 1 |
| TCL1A | T-cell leukemia/lymphoma 1A |
| TERT | telomerase reverse transcriptase |
| TFAP4 | transcription factor AP-4 (activating enhancer binding protein 4) |
| TLR4 | toll-like receptor 4 |
| TMED1 | transmembrane emp24 protein transport domain containing 1 |
| TMEM159 | transmembrane protein 159 |
| TMEM259 | transmembrane protein 259 |
| TPD52L1 | tumor protein D52-like 1 |
| TRIM16 | tripartite motif containing 16 |
| TRPS1 | trichorhinophalangeal syndrome I |
| TYMP | thymidine phosphorylase |
| ZNF142 | zinc finger protein 142 |
| ZNF419 | zinc finger protein 419 |
| ZNF609 | zinc finger protein 609 |
| ZNF688 | zinc finger protein 688 |
| Symbol | Name |
|---|---|
| ABT1 | activator of basal transcription 1 |
| ACAP2 | ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 |
| ACSL4 | acyl-CoA synthetase long-chain family member 4 |
| ADAT1 | adenosine deaminase, tRNA-specific 1 |
| ADM | adrenomedullin |
| AGO3 | argonaute RISC catalytic component 3 |
| ANKRA2 | ankyrin repeat, family A (RFXANK-like), 2 |
| ANKRD11 | ankyrin repeat domain 11 |
| ANKZF1 | ankyrin repeat and zinc finger domain containing 1 |
| ASNSD1 | asparagine synthetase domain containing 1 |
| ATAD2 | ATPase family, AAA domain containing 2 |
| ATXN2 | ataxin 2 |
| C11ORF48 | |
| C11ORF68 | chromosome 11 open reading frame 68 |
| C3 | complement component 3 |
| CASZ1 | castor zinc finger 1 |
| CD302 | CD302 molecule |
| CD82 | CD82 molecule |
| CDK2AP1 | cyclin-dependent kinase 2 associated protein 1 |
| CENPQ | centromere protein Q |
| CEP170B | centrosomal protein 170B |
| CISH | cytokine inducible SH2-containing protein |
| CNP | 2',3'-cyclic nucleotide 3' phosphodiesterase |
| COPS4 | COP9 signalosome subunit 4 |
| CSGALNACT2 | chondroitin sulfate N-acetylgalactosaminyltransferase 2 |
| DDB1 | damage-specific DNA binding protein 1, 127kDa |
| DENND1B | DENN/MADD domain containing 1B |
| DENND4A | DENN/MADD domain containing 4A |
| DYNC1I2 | dynein, cytoplasmic 1, intermediate chain 2 |
| DYNC1LI1 | dynein, cytoplasmic 1, light intermediate chain 1 |
| ERBB2IP | erbb2 interacting protein |
| FAM136A | family with sequence similarity 136, member A |
| FAM189B | family with sequence similarity 189, member B |
| GBE1 | glucan (1,4-alpha-), branching enzyme 1 |
| GMCL1 | germ cell-less, spermatogenesis associated 1 |
| GPATCH2 | G patch domain containing 2 |
| GSTM2 | glutathione S-transferase mu 2 (muscle) |
| HACD2 | 3-hydroxyacyl-CoA dehydratase 2 |
| HLTF | helicase-like transcription factor |
| IPCEF1 | interaction protein for cytohesin exchange factors 1 |
| KIAA0753 | KIAA0753 |
| LBR | lamin B receptor |
| LIN7C | lin-7 homolog C (C. elegans) |
| LINC00339 | long intergenic non-protein coding RNA 339 |
| LOC100272216 | uncharacterized LOC100272216 |
| LOC642236 | FSHD region gene 1 pseudogene |
| MAPKAP1 | mitogen-activated protein kinase associated protein 1 |
| MAVS | mitochondrial antiviral signaling protein |
| MLF2 | myeloid leukemia factor 2 |
| MNAT1 | MNAT CDK-activating kinase assembly factor 1 |
| MTMR6 | myotubularin related protein 6 |
| NCAPH | non-SMC condensin I complex, subunit H |
| NIT1 | nitrilase 1 |
| NUBP2 | nucleotide binding protein 2 |
| PCMTD2 | protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 |
| PCNA | proliferating cell nuclear antigen |
| PCNP | PEST proteolytic signal containing nuclear protein |
| PIGK | phosphatidylinositol glycan anchor biosynthesis, class K |
| PPIP5K2 | diphosphoinositol pentakisphosphate kinase 2 |
| PRRC1 | proline-rich coiled-coil 1 |
| PSTPIP1 | proline-serine-threonine phosphatase interacting protein 1 |
| RAB11FIP1 | RAB11 family interacting protein 1 (class I) |
| RAB5B | RAB5B, member RAS oncogene family |
| RAF1 | Raf-1 proto-oncogene, serine/threonine kinase |
| RFWD3 | ring finger and WD repeat domain 3 |
| RNF111 | ring finger protein 111 |
| RPRD1A | regulation of nuclear pre-mRNA domain containing 1A |
| RRN3 | RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae) |
| RSRC1 | arginine/serine-rich coiled-coil 1 |
| SLC12A9 | solute carrier family 12, member 9 |
| SLC25A40 | solute carrier family 25, member 40 |
| SLC50A1 | solute carrier family 50 (sugar efflux transporter), member 1 |
| SNAPC1 | small nuclear RNA activating complex, polypeptide 1, 43kDa |
| SPON2 | spondin 2, extracellular matrix protein |
| SS18L1 | synovial sarcoma translocation gene on chromosome 18-like 1 |
| STAM | signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 |
| STRA13 | stimulated by retinoic acid 13 |
| STXBP3 | syntaxin binding protein 3 |
| TIPRL | TOR signaling pathway regulator |
| TMA7 | translation machinery associated 7 homolog (S. cerevisiae) |
| TMBIM4 | transmembrane BAX inhibitor motif containing 4 |
| TMEM106B | transmembrane protein 106B |
| TMEM135 | transmembrane protein 135 |
| TMEM14A | transmembrane protein 14A |
| TOMM22 | translocase of outer mitochondrial membrane 22 homolog (yeast) |
| TOP2B | topoisomerase (DNA) II beta 180kDa |
| TPCN1 | two pore segment channel 1 |
| TRNAU1AP | tRNA selenocysteine 1 associated protein 1 |
| TSPYL4 | TSPY-like 4 |
| TTBK2 | tau tubulin kinase 2 |
| UBAC1 | UBA domain containing 1 |
| UBR7 | ubiquitin protein ligase E3 component n-recognin 7 (putative) |
| UGGT2 | UDP-glucose glycoprotein glucosyltransferase 2 |
| VPS52 | vacuolar protein sorting 52 homolog (S. cerevisiae) |
| WASF2 | WAS protein family, member 2 |
| WDR11 | WD repeat domain 11 |
| WDR82 | WD repeat domain 82 |
| YTHDF2 | YTH N(6)-methyladenosine RNA binding protein 2 |
| ZFYVE16 | zinc finger, FYVE domain containing 16 |
| ZNF426 | zinc finger protein 426 |
