| Dataset | CMAP Signatures of Differentially Expressed Genes for Small Molecules |
| Category | transcriptomics |
| Type | small molecule perturbation |
| Description | small molecule perturbation identified as [small molecule name]-[perturbation ID] (ChIP-X Enrichment Analysis) |
| Similar Terms | |
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200 genes differentially expressed following the berberine-6791 small molecule perturbation from the CMAP Signatures of Differentially Expressed Genes for Small Molecules dataset.
| Symbol | Name |
|---|---|
| ACAA2 | acetyl-CoA acyltransferase 2 |
| ADAM5 | ADAM metallopeptidase domain 5 (pseudogene) |
| ADRA1B | adrenoceptor alpha 1B |
| AGRN | agrin |
| AMELX | amelogenin, X-linked |
| AMPD3 | adenosine monophosphate deaminase 3 |
| APOE | apolipoprotein E |
| AVP | arginine vasopressin |
| BAIAP3 | BAI1-associated protein 3 |
| BET1L | Bet1 golgi vesicular membrane trafficking protein-like |
| BIRC7 | baculoviral IAP repeat containing 7 |
| CACNB2 | calcium channel, voltage-dependent, beta 2 subunit |
| CASP1 | caspase 1, apoptosis-related cysteine peptidase |
| CAV2 | caveolin 2 |
| CCDC71 | coiled-coil domain containing 71 |
| CCNK | cyclin K |
| CCRN4L | CCR4 carbon catabolite repression 4-like (S. cerevisiae) |
| CEP41 | centrosomal protein 41kDa |
| CHAC1 | ChaC glutathione-specific gamma-glutamylcyclotransferase 1 |
| CLSTN3 | calsyntenin 3 |
| CNKSR2 | connector enhancer of kinase suppressor of Ras 2 |
| CTSE | cathepsin E |
| CXORF21 | chromosome X open reading frame 21 |
| CYP1B1 | cytochrome P450, family 1, subfamily B, polypeptide 1 |
| CYP3A4 | cytochrome P450, family 3, subfamily A, polypeptide 4 |
| DDIT3 | DNA-damage-inducible transcript 3 |
| DNAAF1 | dynein, axonemal, assembly factor 1 |
| DNAJB12 | DnaJ (Hsp40) homolog, subfamily B, member 12 |
| DNAJC4 | DnaJ (Hsp40) homolog, subfamily C, member 4 |
| ETV4 | ets variant 4 |
| ETV7 | ets variant 7 |
| FAM189A1 | family with sequence similarity 189, member A1 |
| FHL1 | four and a half LIM domains 1 |
| FLJ11292 | |
| FLNC | filamin C, gamma |
| GADD45GIP1 | growth arrest and DNA-damage-inducible, gamma interacting protein 1 |
| GLP1R | glucagon-like peptide 1 receptor |
| GPX5 | glutathione peroxidase 5 |
| GSAP | gamma-secretase activating protein |
| GUCA1A | guanylate cyclase activator 1A (retina) |
| HHLA1 | HERV-H LTR-associating 1 |
| HIPK2 | homeodomain interacting protein kinase 2 |
| HIST1H3E | histone cluster 1, H3e |
| HOXB3 | homeobox B3 |
| IGLJ3 | immunoglobulin lambda joining 3 |
| IPW | imprinted in Prader-Willi syndrome (non-protein coding) |
| IRF4 | interferon regulatory factor 4 |
| IRF8 | interferon regulatory factor 8 |
| KHSRP | KH-type splicing regulatory protein |
| KIR2DL5A | killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 5A |
| KLF2 | Kruppel-like factor 2 |
| LAMC3 | laminin, gamma 3 |
| LAT2 | linker for activation of T cells family, member 2 |
| MARK4 | MAP/microtubule affinity-regulating kinase 4 |
| MC2R | melanocortin 2 receptor (adrenocorticotropic hormone) |
| MEF2C | myocyte enhancer factor 2C |
| MMP19 | matrix metallopeptidase 19 |
| MUC6 | mucin 6, oligomeric mucus/gel-forming |
| MYOZ3 | myozenin 3 |
| MZF1 | myeloid zinc finger 1 |
| NCR3 | natural cytotoxicity triggering receptor 3 |
| NEURL1 | neuralized E3 ubiquitin protein ligase 1 |
| NF1 | neurofibromin 1 |
| PCDHGA8 | protocadherin gamma subfamily A, 8 |
| PDE11A | phosphodiesterase 11A |
| PDGFA | platelet-derived growth factor alpha polypeptide |
| PER3 | period circadian clock 3 |
| PGAP1 | post-GPI attachment to proteins 1 |
| PHLDA1 | pleckstrin homology-like domain, family A, member 1 |
| PLCB1 | phospholipase C, beta 1 (phosphoinositide-specific) |
| PLXND1 | plexin D1 |
| PPIL2 | peptidylprolyl isomerase (cyclophilin)-like 2 |
| PQLC2 | PQ loop repeat containing 2 |
| PRDX2 | peroxiredoxin 2 |
| PROZ | protein Z, vitamin K-dependent plasma glycoprotein |
| PSG1 | pregnancy specific beta-1-glycoprotein 1 |
| PSG11 | pregnancy specific beta-1-glycoprotein 11 |
| PSG3 | pregnancy specific beta-1-glycoprotein 3 |
| PTCRA | pre T-cell antigen receptor alpha |
| RPL18 | ribosomal protein L18 |
| RUSC2 | RUN and SH3 domain containing 2 |
| SCN4A | sodium channel, voltage gated, type IV alpha subunit |
| SERGEF | secretion regulating guanine nucleotide exchange factor |
| SLC1A7 | solute carrier family 1 (glutamate transporter), member 7 |
| SLC6A13 | solute carrier family 6 (neurotransmitter transporter), member 13 |
| SPTB | spectrin, beta, erythrocytic |
| SPTLC2 | serine palmitoyltransferase, long chain base subunit 2 |
| SRC | SRC proto-oncogene, non-receptor tyrosine kinase |
| STARD3 | StAR-related lipid transfer (START) domain containing 3 |
| STARD8 | StAR-related lipid transfer (START) domain containing 8 |
| TMEM63A | transmembrane protein 63A |
| TRBC1 | T cell receptor beta constant 1 |
| UBTD1 | ubiquitin domain containing 1 |
| VAMP2 | vesicle-associated membrane protein 2 (synaptobrevin 2) |
| WDR33 | WD repeat domain 33 |
| WNT6 | wingless-type MMTV integration site family, member 6 |
| ZNF350 | zinc finger protein 350 |
| ZNF37BP | zinc finger protein 37B, pseudogene |
| ZNF862 | zinc finger protein 862 |
| ZRSR1 | zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 1 |
| Symbol | Name |
|---|---|
| ADPRM | ADP-ribose/CDP-alcohol diphosphatase, manganese-dependent |
| ALPK1 | alpha-kinase 1 |
| ANKRD40 | ankyrin repeat domain 40 |
| ARC | activity-regulated cytoskeleton-associated protein |
| ARHGEF26 | Rho guanine nucleotide exchange factor (GEF) 26 |
| C10ORF88 | chromosome 10 open reading frame 88 |
| C17ORF80 | chromosome 17 open reading frame 80 |
| C7ORF43 | chromosome 7 open reading frame 43 |
| CASP3 | caspase 3, apoptosis-related cysteine peptidase |
| CBX8 | chromobox homolog 8 |
| CCDC88C | coiled-coil domain containing 88C |
| CDK3 | cyclin-dependent kinase 3 |
| CHPF | chondroitin polymerizing factor |
| CHST7 | carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7 |
| COL4A3BP | collagen, type IV, alpha 3 (Goodpasture antigen) binding protein |
| COMMD10 | COMM domain containing 10 |
| CORO1A | coronin, actin binding protein, 1A |
| CORT | cortistatin |
| COX16 | COX16 cytochrome c oxidase assembly homolog (S. cerevisiae) |
| CRABP1 | cellular retinoic acid binding protein 1 |
| CTNNBIP1 | catenin, beta interacting protein 1 |
| DHX35 | DEAH (Asp-Glu-Ala-His) box polypeptide 35 |
| DNAJC3 | DnaJ (Hsp40) homolog, subfamily C, member 3 |
| DNMBP | dynamin binding protein |
| ERN2 | endoplasmic reticulum to nucleus signaling 2 |
| ESRP2 | epithelial splicing regulatory protein 2 |
| FBXL15 | F-box and leucine-rich repeat protein 15 |
| FBXL6 | F-box and leucine-rich repeat protein 6 |
| FMO4 | flavin containing monooxygenase 4 |
| FPGS | folylpolyglutamate synthase |
| GLS2 | glutaminase 2 (liver, mitochondrial) |
| GLTSCR1 | glioma tumor suppressor candidate region gene 1 |
| GSTCD | glutathione S-transferase, C-terminal domain containing |
| GTF3C5 | general transcription factor IIIC, polypeptide 5, 63kDa |
| HPSE | heparanase |
| IDI2-AS1 | IDI2 antisense RNA 1 |
| IGSF1 | immunoglobulin superfamily, member 1 |
| INPP5B | inositol polyphosphate-5-phosphatase, 75kDa |
| IRAK4 | interleukin-1 receptor-associated kinase 4 |
| JMJD4 | jumonji domain containing 4 |
| KDM8 | lysine (K)-specific demethylase 8 |
| MEFV | Mediterranean fever |
| MFAP2 | microfibrillar-associated protein 2 |
| MICAL1 | microtubule associated monooxygenase, calponin and LIM domain containing 1 |
| MTERF4 | mitochondrial transcription termination factor 4 |
| MUM1 | melanoma associated antigen (mutated) 1 |
| MUTYH | mutY homolog |
| NBEAL2 | neurobeachin-like 2 |
| NCSTN | nicastrin |
| NDRG4 | NDRG family member 4 |
| PAQR6 | progestin and adipoQ receptor family member VI |
| PARP16 | poly (ADP-ribose) polymerase family, member 16 |
| PCDHGB5 | protocadherin gamma subfamily B, 5 |
| PDZRN3 | PDZ domain containing ring finger 3 |
| PLA2G4C | phospholipase A2, group IVC (cytosolic, calcium-independent) |
| PLD3 | phospholipase D family, member 3 |
| PLEKHO1 | pleckstrin homology domain containing, family O member 1 |
| POMT2 | protein-O-mannosyltransferase 2 |
| PPP1R3C | protein phosphatase 1, regulatory subunit 3C |
| PROS1 | protein S (alpha) |
| PRR3 | proline rich 3 |
| RAD54L2 | RAD54-like 2 (S. cerevisiae) |
| RARS | arginyl-tRNA synthetase |
| REEP4 | receptor accessory protein 4 |
| RGS2 | regulator of G-protein signaling 2 |
| RNASEL | ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent) |
| RNF2 | ring finger protein 2 |
| ROBO1 | roundabout, axon guidance receptor, homolog 1 (Drosophila) |
| RRNAD1 | ribosomal RNA adenine dimethylase domain containing 1 |
| SCAMP4 | secretory carrier membrane protein 4 |
| SCUBE2 | signal peptide, CUB domain, EGF-like 2 |
| SEC16A | SEC16 homolog A (S. cerevisiae) |
| SH2D4A | SH2 domain containing 4A |
| SIX1 | SIX homeobox 1 |
| SLC20A2 | solute carrier family 20 (phosphate transporter), member 2 |
| SLC25A21 | solute carrier family 25 (mitochondrial oxoadipate carrier), member 21 |
| SLC26A6 | solute carrier family 26 (anion exchanger), member 6 |
| SLIT2 | slit homolog 2 (Drosophila) |
| SMEK2 | SMEK homolog 2, suppressor of mek1 (Dictyostelium) |
| SMPD2 | sphingomyelin phosphodiesterase 2, neutral membrane (neutral sphingomyelinase) |
| SMUG1 | single-strand-selective monofunctional uracil-DNA glycosylase 1 |
| SOX3 | SRY (sex determining region Y)-box 3 |
| STARD5 | StAR-related lipid transfer (START) domain containing 5 |
| TAF4B | TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa |
| TEP1 | telomerase-associated protein 1 |
| THRAP3 | thyroid hormone receptor associated protein 3 |
| TMC7 | transmembrane channel-like 7 |
| TNFSF13 | tumor necrosis factor (ligand) superfamily, member 13 |
| TRIM5 | tripartite motif containing 5 |
| TUBA3C | tubulin, alpha 3c |
| TXNIP | thioredoxin interacting protein |
| UBQLN4 | ubiquilin 4 |
| USB1 | U6 snRNA biogenesis 1 |
| VPS39 | vacuolar protein sorting 39 homolog (S. cerevisiae) |
| WDR91 | WD repeat domain 91 |
| ZFP69B | ZFP69 zinc finger protein B |
| ZNF16 | zinc finger protein 16 |
| ZNF219 | zinc finger protein 219 |
| ZNF324 | zinc finger protein 324 |
| ZW10 | zw10 kinetochore protein |
