| Dataset | CMAP Signatures of Differentially Expressed Genes for Small Molecules |
| Category | transcriptomics |
| Type | small molecule perturbation |
| Description | small molecule perturbation identified as [small molecule name]-[perturbation ID] (ChIP-X Enrichment Analysis) |
| Similar Terms | |
| Downloads & Tools |
197 genes differentially expressed following the berberine-7143 small molecule perturbation from the CMAP Signatures of Differentially Expressed Genes for Small Molecules dataset.
| Symbol | Name |
|---|---|
| ACADS | acyl-CoA dehydrogenase, C-2 to C-3 short chain |
| AKAP13 | A kinase (PRKA) anchor protein 13 |
| ALDH3A1 | aldehyde dehydrogenase 3 family, member A1 |
| ALDH4A1 | aldehyde dehydrogenase 4 family, member A1 |
| ALS2CL | ALS2 C-terminal like |
| AP3B1 | adaptor-related protein complex 3, beta 1 subunit |
| ATXN7L1 | ataxin 7-like 1 |
| AURKA | aurora kinase A |
| BAZ1B | bromodomain adjacent to zinc finger domain, 1B |
| BTN3A1 | butyrophilin, subfamily 3, member A1 |
| CALML4 | calmodulin-like 4 |
| CASP1 | caspase 1, apoptosis-related cysteine peptidase |
| CCDC88C | coiled-coil domain containing 88C |
| CCNG2 | cyclin G2 |
| CDK3 | cyclin-dependent kinase 3 |
| CEP162 | centrosomal protein 162kDa |
| CSE1L | CSE1 chromosome segregation 1-like (yeast) |
| CTSK | cathepsin K |
| DBP | D site of albumin promoter (albumin D-box) binding protein |
| DDX58 | DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 |
| DDX6 | DEAD (Asp-Glu-Ala-Asp) box helicase 6 |
| ETS1 | v-ets avian erythroblastosis virus E26 oncogene homolog 1 |
| ETV1 | ets variant 1 |
| FAM49B | family with sequence similarity 49, member B |
| FCMR | Fc fragment of IgM receptor |
| FGF1 | fibroblast growth factor 1 (acidic) |
| FGF13 | fibroblast growth factor 13 |
| FKBP10 | FK506 binding protein 10, 65 kDa |
| FUT6 | fucosyltransferase 6 (alpha (1,3) fucosyltransferase) |
| FZD1 | frizzled class receptor 1 |
| GABRA2 | gamma-aminobutyric acid (GABA) A receptor, alpha 2 |
| GGA2 | golgi-associated, gamma adaptin ear containing, ARF binding protein 2 |
| GK | glycerol kinase |
| HNF1B | HNF1 homeobox B |
| HNRNPA3P1 | heterogeneous nuclear ribonucleoprotein A3 pseudogene 1 |
| HOXC13 | homeobox C13 |
| HTT | huntingtin |
| IFT74 | intraflagellar transport 74 |
| JAG1 | jagged 1 |
| MAPK14 | mitogen-activated protein kinase 14 |
| MECP2 | methyl CpG binding protein 2 |
| MFGE8 | milk fat globule-EGF factor 8 protein |
| MPPE1 | metallophosphoesterase 1 |
| MTSS1L | metastasis suppressor 1-like |
| MXD4 | MAX dimerization protein 4 |
| MYB | v-myb avian myeloblastosis viral oncogene homolog |
| NABP1 | nucleic acid binding protein 1 |
| NDE1 | nudE neurodevelopment protein 1 |
| NPM3 | nucleophosmin/nucleoplasmin 3 |
| NPR3 | natriuretic peptide receptor 3 |
| OCLN | occludin |
| PATZ1 | POZ (BTB) and AT hook containing zinc finger 1 |
| PCYT1A | phosphate cytidylyltransferase 1, choline, alpha |
| PDAP1 | PDGFA associated protein 1 |
| PDE8B | phosphodiesterase 8B |
| PRDM10 | PR domain containing 10 |
| PTN | pleiotrophin |
| RAB11FIP3 | RAB11 family interacting protein 3 (class II) |
| RAB2A | RAB2A, member RAS oncogene family |
| RAD23B | RAD23 homolog B (S. cerevisiae) |
| RERE | arginine-glutamic acid dipeptide (RE) repeats |
| RGS10 | regulator of G-protein signaling 10 |
| RRAGD | Ras-related GTP binding D |
| SCD5 | stearoyl-CoA desaturase 5 |
| SETDB1 | SET domain, bifurcated 1 |
| SFTPB | surfactant protein B |
| SLC1A7 | solute carrier family 1 (glutamate transporter), member 7 |
| SLC30A5 | solute carrier family 30 (zinc transporter), member 5 |
| SLC7A8 | solute carrier family 7 (amino acid transporter light chain, L system), member 8 |
| SNAPC3 | small nuclear RNA activating complex, polypeptide 3, 50kDa |
| SNAPC5 | small nuclear RNA activating complex, polypeptide 5, 19kDa |
| SNX13 | sorting nexin 13 |
| SOCS3 | suppressor of cytokine signaling 3 |
| SPPL2B | signal peptide peptidase like 2B |
| SRPX2 | sushi-repeat containing protein, X-linked 2 |
| STARD5 | StAR-related lipid transfer (START) domain containing 5 |
| STK17B | serine/threonine kinase 17b |
| SULT1A2 | sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2 |
| SUN1 | Sad1 and UNC84 domain containing 1 |
| SYNPO | synaptopodin |
| TBX2 | T-box 2 |
| TCL6 | T-cell leukemia/lymphoma 6 (non-protein coding) |
| TFAP2C | transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma) |
| THOC5 | THO complex 5 |
| TLE1 | transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila) |
| TMEM259 | transmembrane protein 259 |
| TOX | thymocyte selection-associated high mobility group box |
| TRAK1 | trafficking protein, kinesin binding 1 |
| TRIM25 | tripartite motif containing 25 |
| TTC38 | tetratricopeptide repeat domain 38 |
| USP6NL | USP6 N-terminal like |
| VEZT | vezatin, adherens junctions transmembrane protein |
| WWP2 | WW domain containing E3 ubiquitin protein ligase 2 |
| ZAK | sterile alpha motif and leucine zipper containing kinase AZK |
| ZFHX3 | zinc finger homeobox 3 |
| ZKSCAN3 | zinc finger with KRAB and SCAN domains 3 |
| ZNF174 | zinc finger protein 174 |
| ZNF222 | zinc finger protein 222 |
| ZNF79 | zinc finger protein 79 |
| Symbol | Name |
|---|---|
| ACOT8 | acyl-CoA thioesterase 8 |
| AEN | apoptosis enhancing nuclease |
| ANOS1 | anosmin 1 |
| AP1G2 | adaptor-related protein complex 1, gamma 2 subunit |
| ARFGAP1 | ADP-ribosylation factor GTPase activating protein 1 |
| ARHGEF28 | Rho guanine nucleotide exchange factor (GEF) 28 |
| ATAD5 | ATPase family, AAA domain containing 5 |
| BDNF | brain-derived neurotrophic factor |
| C12ORF43 | chromosome 12 open reading frame 43 |
| C17ORF80 | chromosome 17 open reading frame 80 |
| C9ORF91 | chromosome 9 open reading frame 91 |
| CALCOCO1 | calcium binding and coiled-coil domain 1 |
| CCDC91 | coiled-coil domain containing 91 |
| CCRL2 | chemokine (C-C motif) receptor-like 2 |
| CFAP44 | cilia and flagella associated protein 44 |
| CHKB | choline kinase beta |
| CHST10 | carbohydrate sulfotransferase 10 |
| CTNNBIP1 | catenin, beta interacting protein 1 |
| DAPP1 | dual adaptor of phosphotyrosine and 3-phosphoinositides |
| DCLRE1A | DNA cross-link repair 1A |
| DLEU2 | deleted in lymphocytic leukemia 2 (non-protein coding) |
| DSE | dermatan sulfate epimerase |
| DYRK4 | dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4 |
| EHHADH | enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase |
| ERCC5 | excision repair cross-complementation group 5 |
| ERCC6 | excision repair cross-complementation group 6 |
| EVPL | envoplakin |
| FAM102A | family with sequence similarity 102, member A |
| FAM3A | family with sequence similarity 3, member A |
| FGD1 | FYVE, RhoGEF and PH domain containing 1 |
| GNAZ | guanine nucleotide binding protein (G protein), alpha z polypeptide |
| GRWD1 | glutamate-rich WD repeat containing 1 |
| HDAC4 | histone deacetylase 4 |
| HDAC5 | histone deacetylase 5 |
| HSPB8 | heat shock 22kDa protein 8 |
| IFT46 | intraflagellar transport 46 |
| INCENP | inner centromere protein antigens 135/155kDa |
| ING3 | inhibitor of growth family, member 3 |
| ISL1 | ISL LIM homeobox 1 |
| JMJD4 | jumonji domain containing 4 |
| JUNB | jun B proto-oncogene |
| KIAA0753 | KIAA0753 |
| KIRREL | kin of IRRE like (Drosophila) |
| KLC2 | kinesin light chain 2 |
| KLHL12 | kelch-like family member 12 |
| KRT8P12 | keratin 8 pseudogene 12 |
| LZTR1 | leucine-zipper-like transcription regulator 1 |
| MAST3 | microtubule associated serine/threonine kinase 3 |
| MCM3AP-AS1 | MCM3AP antisense RNA 1 |
| MOGS | mannosyl-oligosaccharide glucosidase |
| MPP6 | membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6) |
| MUTYH | mutY homolog |
| MYL5 | myosin, light chain 5, regulatory |
| NDUFAF7 | NADH dehydrogenase (ubiquinone) complex I, assembly factor 7 |
| NOV | nephroblastoma overexpressed |
| NXPE3 | neurexophilin and PC-esterase domain family, member 3 |
| PACSIN3 | protein kinase C and casein kinase substrate in neurons 3 |
| PARN | poly(A)-specific ribonuclease |
| PIEZO1 | piezo-type mechanosensitive ion channel component 1 |
| PLD3 | phospholipase D family, member 3 |
| POLA2 | polymerase (DNA directed), alpha 2, accessory subunit |
| PPP1R9A | protein phosphatase 1, regulatory subunit 9A |
| PPP3R1 | protein phosphatase 3, regulatory subunit B, alpha |
| PTPN14 | protein tyrosine phosphatase, non-receptor type 14 |
| RAB11FIP1 | RAB11 family interacting protein 1 (class I) |
| RAD51AP1 | RAD51 associated protein 1 |
| RAD54L2 | RAD54-like 2 (S. cerevisiae) |
| RANBP17 | RAN binding protein 17 |
| RBM47 | RNA binding motif protein 47 |
| RHBDF1 | rhomboid 5 homolog 1 (Drosophila) |
| ROGDI | rogdi homolog (Drosophila) |
| RPL7A | ribosomal protein L7a |
| SETD1B | SET domain containing 1B |
| SEZ6L2 | seizure related 6 homolog (mouse)-like 2 |
| SFMBT1 | Scm-like with four mbt domains 1 |
| SLC19A2 | solute carrier family 19 (thiamine transporter), member 2 |
| SLC26A6 | solute carrier family 26 (anion exchanger), member 6 |
| SLC36A1 | solute carrier family 36 (proton/amino acid symporter), member 1 |
| SMG1 | SMG1 phosphatidylinositol 3-kinase-related kinase |
| SNX16 | sorting nexin 16 |
| ST6GALNAC2 | ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 |
| STARD13 | StAR-related lipid transfer (START) domain containing 13 |
| STX17 | syntaxin 17 |
| TCIRG1 | T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3 |
| TGFB3 | transforming growth factor, beta 3 |
| TMC5 | transmembrane channel-like 5 |
| TMEM127 | transmembrane protein 127 |
| TMEM177 | transmembrane protein 177 |
| TRAPPC11 | trafficking protein particle complex 11 |
| TTBK2 | tau tubulin kinase 2 |
| TTC4 | tetratricopeptide repeat domain 4 |
| USP5 | ubiquitin specific peptidase 5 (isopeptidase T) |
| WDR37 | WD repeat domain 37 |
| ZBED1 | zinc finger, BED-type containing 1 |
| ZDHHC18 | zinc finger, DHHC-type containing 18 |
| ZNF415 | zinc finger protein 415 |
| ZNF574 | zinc finger protein 574 |
| ZXDC | ZXD family zinc finger C |
