berry Gene Set

Dataset TISSUES Text-mining Tissue Protein Expression Evidence Scores
Category structural or functional annotations
Type tissue
Description A simple fruit (as a currant, grape, tomato, or banana) with a pulpy or fleshy pericarp. (BRENDA Tissue and Enzyme Source Ontology, BTO_0000119)
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Genes

173 proteins co-occuring with the tissue berry in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset.

Symbol Name Standardized Value
RBBP9 retinoblastoma binding protein 9 1.53526
MYB v-myb avian myeloblastosis viral oncogene homolog 1.53095
NUDT3 nudix (nucleoside diphosphate linked moiety X)-type motif 3 1.39559
VAT1 vesicle amine transport 1 1.24922
TAS2R38 taste receptor, type 2, member 38 1.24788
RAPGEF1 Rap guanine nucleotide exchange factor (GEF) 1 1.19089
DPEP1 dipeptidase 1 (renal) 1.1829
NMRK2 nicotinamide riboside kinase 2 1.13634
PRR7 proline rich 7 (synaptic) 1.03873
ME1 malic enzyme 1, NADP(+)-dependent, cytosolic 0.983688
ME3 malic enzyme 3, NADP(+)-dependent, mitochondrial 0.934911
SRMS src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites 0.931051
PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) 0.889253
ASB14 ankyrin repeat and SOCS box containing 14 0.887981
SLC22A9 solute carrier family 22 (organic anion transporter), member 9 0.869794
SLC22A11 solute carrier family 22 (organic anion/urate transporter), member 11 0.8601
BRIX1 BRX1, biogenesis of ribosomes 0.852106
ME2 malic enzyme 2, NAD(+)-dependent, mitochondrial 0.844545
GANAB glucosidase, alpha; neutral AB 0.830291
BBS2 Bardet-Biedl syndrome 2 0.823175
PPME1 protein phosphatase methylesterase 1 0.796041
UCHL3 ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase) 0.793126
RAB37 RAB37, member RAS oncogene family 0.781478
MGAM maltase-glucoamylase 0.765711
TUFM Tu translation elongation factor, mitochondrial 0.749166
PEF1 penta-EF-hand domain containing 1 0.740503
SIRT3 sirtuin 3 0.725685
GANC glucosidase, alpha; neutral C 0.708041
INS insulin 0.695354
SIRT5 sirtuin 5 0.683103
SIRT7 sirtuin 7 0.67495
CCND1 cyclin D1 0.668843
SEPT4 septin 4 0.663149
PIGY phosphatidylinositol glycan anchor biosynthesis, class Y 0.660304
RB1 retinoblastoma 1 0.659491
PRAMEF12 PRAME family member 12 0.657866
SIRT4 sirtuin 4 0.657866
AP1M1 adaptor-related protein complex 1, mu 1 subunit 0.655024
FBRS fibrosin 0.650154
CST2 cystatin SA 0.635976
BAX BCL2-associated X protein 0.632335
CBS cystathionine-beta-synthase 0.625061
MAPK6 mitogen-activated protein kinase 6 0.623446
CACNB4 calcium channel, voltage-dependent, beta 4 subunit 0.621024
CAT catalase 0.620217
AKT1 v-akt murine thymoma viral oncogene homolog 1 0.61941
HSD17B7 hydroxysteroid (17-beta) dehydrogenase 7 0.6182
STPG1 sperm-tail PG-rich repeat containing 1 0.613764
CYP1A1 cytochrome P450, family 1, subfamily A, polypeptide 1 0.612958
SIRT6 sirtuin 6 0.592043
NDUFA9 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa 0.587228
SOD2 superoxide dismutase 2, mitochondrial 0.587228
CNTN4 contactin 4 0.587228
BIRC5 baculoviral IAP repeat containing 5 0.584022
HCAR1 hydroxycarboxylic acid receptor 1 0.576015
HBG1 hemoglobin, gamma A 0.575616
AGK acylglycerol kinase 0.570021
HLA-DQB1 major histocompatibility complex, class II, DQ beta 1 0.569222
SIRT1 sirtuin 1 0.567227
GPX5 glutathione peroxidase 5 0.552888
CABP1 calcium binding protein 1 0.552093
PPA1 pyrophosphatase (inorganic) 1 0.550106
GPX4 glutathione peroxidase 4 0.548914
ANXA8 annexin A8 0.547724
GPX1 glutathione peroxidase 1 0.537416
RPS16 ribosomal protein S16 0.537021
LEO1 Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) 0.53267
ADH6 alcohol dehydrogenase 6 (class V) 0.528719
ANGPTL7 angiopoietin-like 7 0.51453
PGM2 phosphoglucomutase 2 0.505495
STIL SCL/TAL1 interrupting locus 0.50079
CRP C-reactive protein, pentraxin-related 0.494136
DECR1 2,4-dienoyl CoA reductase 1, mitochondrial 0.490229
FCF1 FCF1 rRNA-processing protein 0.473869
HLA-DQB3 major histocompatibility complex, class II, DQ beta 3 0.471539
MAGEE1 melanoma antigen family E1 0.470763
RHAG Rh-associated glycoprotein 0.470763
STAB2 stabilin 2 0.464174
CASP3 caspase 3, apoptosis-related cysteine peptidase 0.456442
SIRT2 sirtuin 2 0.45567
SUB1 SUB1 homolog (S. cerevisiae) 0.451813
CST4 cystatin S 0.451042
TP53 tumor protein p53 0.446807
GIN1 gypsy retrotransposon integrase 1 0.445653
ALDH18A1 aldehyde dehydrogenase 18 family, member A1 0.436438
COLQ collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase 0.426109
CYB5A cytochrome b5 type A (microsomal) 0.426109
FUCA1 fucosidase, alpha-L- 1, tissue 0.418099
ANXA5 annexin A5 0.413532
RPL22 ribosomal protein L22 0.412391
PARP1 poly (ADP-ribose) polymerase 1 0.408972
RBX1 ring-box 1, E3 ubiquitin protein ligase 0.405555
UBE2H ubiquitin-conjugating enzyme E2H 0.393064
ALB albumin 0.391176
TNF tumor necrosis factor 0.381003
PCK2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) 0.381003
GLA galactosidase, alpha 0.377621
SCGB2A2 secretoglobin, family 2A, member 2 0.374993
JUN jun proto-oncogene 0.373868
BAG1 BCL2-associated athanogene 0.371619
PCK1 phosphoenolpyruvate carboxykinase 1 (soluble) 0.368624
USH1C Usher syndrome 1C (autosomal recessive, severe) 0.366754
ZC3H12D zinc finger CCCH-type containing 12D 0.364886
ADH7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide 0.363766
ALOX5 arachidonate 5-lipoxygenase 0.361901
LITAF lipopolysaccharide-induced TNF factor 0.360409
GAA glucosidase, alpha; acid 0.347778
PANK2 pantothenate kinase 2 0.345928
NR2F1 nuclear receptor subfamily 2, group F, member 1 0.345188
TLE1 transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila) 0.344818
PRKCSH protein kinase C substrate 80K-H 0.330827
PON3 paraoxonase 3 0.330827
VEGFA vascular endothelial growth factor A 0.329727
MRC1 mannose receptor, C type 1 0.328262
MMP9 matrix metallopeptidase 9 0.327896
TADA3 transcriptional adaptor 3 0.324605
HTR3A 5-hydroxytryptamine (serotonin) receptor 3A, ionotropic 0.317679
PTOV1 prostate tumor overexpressed 1 0.316588
CDK2 cyclin-dependent kinase 2 0.310059
BCL2L1 BCL2-like 1 0.309697
TFDP3 transcription factor Dp family, member 3 0.305001
TIRAP toll-interleukin 1 receptor (TIR) domain containing adaptor protein 0.303919
RPS6KB1 ribosomal protein S6 kinase, 70kDa, polypeptide 1 0.302478
AAAS achalasia, adrenocortical insufficiency, alacrimia 0.302118
DYNLRB1 dynein, light chain, roadblock-type 1 0.297806
FOXF1 forkhead box F1 0.297089
ZNF44 zinc finger protein 44 0.296372
APAF1 apoptotic peptidase activating factor 1 0.295655
XIAP X-linked inhibitor of apoptosis, E3 ubiquitin protein ligase 0.291722
FLAD1 flavin adenine dinucleotide synthetase 1 0.291365
SNORA29 small nucleolar RNA, H/ACA box 29 0.289582
PSMB10 proteasome (prosome, macropain) subunit, beta type, 10 0.289226
KLHL2 kelch-like family member 2 0.286381
CLTC clathrin, heavy chain (Hc) 0.284962
PLCB1 phospholipase C, beta 1 (phosphoinositide-specific) 0.283191
GML glycosylphosphatidylinositol anchored molecule like 0.282837
HCAR2 hydroxycarboxylic acid receptor 2 0.276846
EIF2AK3 eukaryotic translation initiation factor 2-alpha kinase 3 0.271256
CHMP2A charged multivesicular body protein 2A 0.270561
UGT1A6 UDP glucuronosyltransferase 1 family, polypeptide A6 0.267446
NFKBIA nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha 0.265725
CAND2 cullin-associated and neddylation-dissociated 2 (putative) 0.260606
MATN1 matrilin 1, cartilage matrix protein 0.259929
ABCB6 ATP-binding cassette, sub-family B (MDR/TAP), member 6 (Langereis blood group) 0.255567
P4HTM prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum) 0.247079
CYP2C19 cytochrome P450, family 2, subfamily C, polypeptide 19 0.244232
KNTC1 kinetochore associated 1 0.244232
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor) 0.242983
LOXL1 lysyl oxidase-like 1 0.240826
IRF5 interferon regulatory factor 5 0.236332
NOVA2 neuro-oncological ventral antigen 2 0.234878
ADH4 alcohol dehydrogenase 4 (class II), pi polypeptide 0.233162
NOX4 NADPH oxidase 4 0.232599
SLC35A2 solute carrier family 35 (UDP-galactose transporter), member A2 0.232039
PGAM2 phosphoglycerate mutase 2 (muscle) 0.231206
OR4F29 olfactory receptor, family 4, subfamily F, member 29 0.230931
PON1 paraoxonase 1 0.23011
CCNA1 cyclin A1 0.227186
ERCC5 excision repair cross-complementation group 5 0.223419
AGA aspartylglucosaminidase 0.222224
CYP1B1 cytochrome P450, family 1, subfamily B, polypeptide 1 0.221291
MMP2 matrix metallopeptidase 2 0.219928
AHR aryl hydrocarbon receptor 0.219928
PON2 paraoxonase 2 0.21883
GALR1 galanin receptor 1 0.216933
NFE2L2 nuclear factor, erythroid 2-like 2 0.21673
CYP4V2 cytochrome P450, family 4, subfamily V, polypeptide 2 0.21673
PGAM1 phosphoglycerate mutase 1 (brain) 0.216528
STX8 syntaxin 8 0.21573
CDK4 cyclin-dependent kinase 4 0.215534
CADM1 cell adhesion molecule 1 0.214388
CYP2C9 cytochrome P450, family 2, subfamily C, polypeptide 9 0.214388
BPGM 2,3-bisphosphoglycerate mutase 0.212586