beta-heterochromatin Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025
Category structural or functional annotations
Type cellular component
Description A diffusely banded region of heterochromatin located between euchromatin and alpha-heterochromatin in the polytene chromosome chromocenter; normally replicated during polytenization. (Gene Ontology, GO_0005722)
External Link http://amigo.geneontology.org/amigo/term/GO:0005722
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Genes

121 proteins co-occuring with the beta-heterochromatin cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.

Symbol Name Standardized Value
ZBED1 zinc finger, BED-type containing 1 1.799
CBX5 chromobox homolog 5 1.634
TDRD9 tudor domain containing 9 1.627
MPG N-methylpurine-DNA glycosylase 1.618
H2AZ2 H2A.Z variant histone 2 1.533
EIF3A eukaryotic translation initiation factor 3, subunit A 1.531
RPL15 ribosomal protein L15 1.482
ATRX alpha thalassemia/mental retardation syndrome X-linked 1.472
PRR12 proline rich 12 1.454
H3-5 H3.5 histone 1.374
PIWIL4 piwi-like RNA-mediated gene silencing 4 1.342
SMARCA2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 1.329
DAXX death-domain associated protein 1.318
ANKRD31 ankyrin repeat domain 31 1.312
DNAJB9 DnaJ (Hsp40) homolog, subfamily B, member 9 1.28
PIWIL1 piwi-like RNA-mediated gene silencing 1 1.239
H3-7 H3.7 histone (putative) 1.199
H3C13 H3 clustered histone 13 1.199
H3-4 H3.4 histone, cluster member 1.198
TMEM97 transmembrane protein 97 1.195
H3C7 H3 clustered histone 7 1.19
DNMT3L DNA (cytosine-5-)-methyltransferase 3-like 1.182
IHO1 interactor of HORMAD1 1 1.177
PLD6 phospholipase D family, member 6 1.177
KAT14 lysine acetyltransferase 14 1.161
CBX1 chromobox homolog 1 1.16
ZFHX2 zinc finger homeobox 2 1.16
H2AC20 H2A clustered histone 20 1.154
H2AC19 H2A clustered histone 19 1.153
ZZZ3 zinc finger, ZZ-type containing 3 1.127
CNGA1 cyclic nucleotide gated channel alpha 1 1.118
SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 1.108
H2AZ1 H2A.Z variant histone 1 1.093
SMU1 smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans) 1.082
SPO11 SPO11 meiotic protein covalently bound to DSB 1.077
CDV3 CDV3 homolog (mouse) 1.073
TDRD6 tudor domain containing 6 1.064
BPTF bromodomain PHD finger transcription factor 1.06
CCNB1IP1 cyclin B1 interacting protein 1, E3 ubiquitin protein ligase 1.06
WDR11 WD repeat domain 11 1.054
RBM27 RNA binding motif protein 27 1.042
LMNB2 lamin B2 1.039
HOXA9 homeobox A9 1.023
REC114 REC114 meiotic recombination protein 1.014
ZMYM2 zinc finger, MYM-type 2 1.0
LMNB1 lamin B1 0.995
DNMT3B DNA (cytosine-5-)-methyltransferase 3 beta 0.989
MAEL maelstrom spermatogenic transposon silencer 0.943
ORC3 origin recognition complex, subunit 3 0.934
RNF212 ring finger protein 212 0.93
NFX1 nuclear transcription factor, X-box binding 1 0.925
TDRD1 tudor domain containing 1 0.917
CTCF CCCTC-binding factor (zinc finger protein) 0.915
TEX11 testis expressed 11 0.911
LGALS4 lectin, galactoside-binding, soluble, 4 0.895
RPL21 ribosomal protein L21 0.885
RSF1 remodeling and spacing factor 1 0.862
MSL3 male-specific lethal 3 homolog (Drosophila) 0.83
HFM1 HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae) 0.81
TAF9 TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa 0.804
LBR lamin B receptor 0.793
GTF3A general transcription factor IIIA 0.792
BLM Bloom syndrome, RecQ helicase-like 0.791
ERI1 exoribonuclease 1 0.785
SCARA3 scavenger receptor class A, member 3 0.778
ST3GAL4 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 0.778
H4C7 H4 clustered histone 7 0.773
MYBL1 v-myb avian myeloblastosis viral oncogene homolog-like 1 0.772
VRK1 vaccinia related kinase 1 0.772
RPS3A ribosomal protein S3A 0.761
BAZ2A bromodomain adjacent to zinc finger domain, 2A 0.757
H4C15 H4 clustered histone 15 0.755
RASGRF1 Ras protein-specific guanine nucleotide-releasing factor 1 0.752
BAZ1A bromodomain adjacent to zinc finger domain, 1A 0.751
MGST1 microsomal glutathione S-transferase 1 0.74
MSH5 mutS homolog 5 0.735
HSPA4 heat shock 70kDa protein 4 0.732
MLH3 mutL homolog 3 0.731
H2BC21 H2B clustered histone 21 0.718
TARBP2 TAR (HIV-1) RNA binding protein 2 0.709
ADARB1 adenosine deaminase, RNA-specific, B1 0.704
DCP1A decapping mRNA 1A 0.699
HORMAD1 HORMA domain containing 1 0.699
PRDM9 PR domain containing 9 0.697
SND1 staphylococcal nuclease and tudor domain containing 1 0.694
CDIPT CDP-diacylglycerol--inositol 3-phosphatidyltransferase 0.692
PIWIL2 piwi-like RNA-mediated gene silencing 2 0.685
MSH4 mutS homolog 4 0.674
CBX2 chromobox homolog 2 0.669
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.661
AGO3 argonaute RISC catalytic component 3 0.659
IER3 immediate early response 3 0.651
H3-3B H3.3 histone B 0.639
DDX39B DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 0.632
KDM4B lysine (K)-specific demethylase 4B 0.629
PIR pirin (iron-binding nuclear protein) 0.625
EME1 essential meiotic structure-specific endonuclease 1 0.622
DNMT1 DNA (cytosine-5-)-methyltransferase 1 0.617
TRDMT1 tRNA aspartic acid methyltransferase 1 0.616
MATR3 matrin 3 0.598
SLX4 SLX4 structure-specific endonuclease subunit 0.598
PCYT1A phosphate cytidylyltransferase 1, choline, alpha 0.596
RNF4 ring finger protein 4 0.595
DICER1 dicer 1, ribonuclease type III 0.59
CENPS-CORT CENPS-CORT readthrough 0.584
SLC39A1 solute carrier family 39 (zinc transporter), member 1 0.582
UNC93B1 unc-93 homolog B1 (C. elegans) 0.576
DR1 down-regulator of transcription 1, TBP-binding (negative cofactor 2) 0.575
PARG poly (ADP-ribose) glycohydrolase 0.572
MECP2 methyl CpG binding protein 2 0.568
AGO4 argonaute RISC catalytic component 4 0.568
PPM1D protein phosphatase, Mg2+/Mn2+ dependent, 1D 0.556
NDE1 nudE neurodevelopment protein 1 0.554
SAMM50 SAMM50 sorting and assembly machinery component 0.554
ADH1A alcohol dehydrogenase 1A (class I), alpha polypeptide 0.547
CHD3 chromodomain helicase DNA binding protein 3 0.546
HCFC1 host cell factor C1 0.545
CDC7 cell division cycle 7 0.517
ASZ1 ankyrin repeat, SAM and basic leucine zipper domain containing 1 0.512
KDM4A lysine (K)-specific demethylase 4A 0.507
CBX3 chromobox homolog 3 0.505