biliary atresia Gene Set

Dataset DISEASES Text-mining Gene-Disease Assocation Evidence Scores
Category disease or phenotype associations
Type disease
Description A cholestasis characterized by blockage of the ducts that carry bile from the liver to the gallbladder. (Human Disease Ontology, DOID_13608)
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Genes

155 genes co-occuring with the disease biliary atresia in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores dataset.

Symbol Name Standardized Value
GOT1 glutamic-oxaloacetic transaminase 1, soluble 1.28086
GGT1 gamma-glutamyltransferase 1 1.27083
GOT2 glutamic-oxaloacetic transaminase 2, mitochondrial 1.24732
CFC1 cripto, FRL-1, cryptic family 1 1.22345
ALPPL2 alkaline phosphatase, placental-like 2 1.15325
ALPP alkaline phosphatase, placental 1.15283
ALPL alkaline phosphatase, liver/bone/kidney 1.1524
ALB albumin 1.13882
SLC25A13 solute carrier family 25 (aspartate/glutamate carrier), member 13 1.13712
XPNPEP1 X-prolyl aminopeptidase (aminopeptidase P) 1, soluble 0.97338
ADD3 adducin 3 (gamma) 0.97128
GGT2 gamma-glutamyltransferase 2 0.966244
KRT7 keratin 7, type II 0.938289
RBMY1A1 RNA binding motif protein, Y-linked, family 1, member A1 0.924626
KRT19 keratin 19, type I 0.836427
RELT RELT tumor necrosis factor receptor 0.824128
AFP alpha-fetoprotein 0.799513
CTGF connective tissue growth factor 0.789672
JAG1 jagged 1 0.775341
TGFB1 transforming growth factor, beta 1 0.754527
ATP8B1 ATPase, aminophospholipid transporter, class I, type 8B, member 1 0.746391
BCHE butyrylcholinesterase 0.730976
FSCN1 fascin actin-bundling protein 1 0.711587
CPLX3 complexin 3 0.705144
F2 coagulation factor II (thrombin) 0.69751
INHBC inhibin, beta C 0.686291
CD68 CD68 molecule 0.681495
NR1H4 nuclear receptor subfamily 1, group H, member 4 0.680697
GPC1 glypican 1 0.665563
SLC10A1 solute carrier family 10 (sodium/bile acid cotransporter), member 1 0.650903
NCAM1 neural cell adhesion molecule 1 0.63907
AK7 adenylate kinase 7 0.636708
SPP1 secreted phosphoprotein 1 0.621792
IGLV1-47 immunoglobulin lambda variable 1-47 0.60342
LDOC1 leucine zipper, down-regulated in cancer 1 0.60225
BLOC1S3 biogenesis of lysosomal organelles complex-1, subunit 3 0.590948
HNF1B HNF1 homeobox B 0.585497
HPCA hippocalcin 0.583941
SLC35B4 solute carrier family 35 (UDP-xylose/UDP-N-acetylglucosamine transporter), member B4 0.583552
HLX H2.0-like homeobox 0.555956
NR1I3 nuclear receptor subfamily 1, group I, member 3 0.548195
FCGBP Fc fragment of IgG binding protein 0.546256
TLR3 toll-like receptor 3 0.53928
ABO ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) 0.537731
RYBP RING1 and YY1 binding protein 0.535796
TIMP1 TIMP metallopeptidase inhibitor 1 0.526518
STX3 syntaxin 3 0.525746
ICAM1 intercellular adhesion molecule 1 0.521117
MX1 MX dynamin-like GTPase 1 0.510344
SMARCA1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 0.491597
HAMP hepcidin antimicrobial peptide 0.483224
MLLT4 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 0.477151
CD4 CD4 molecule 0.467306
TLR7 toll-like receptor 7 0.463527
PKHD1 polycystic kidney and hepatic disease 1 (autosomal recessive) 0.458619
GJB6 gap junction protein, beta 6, 30kDa 0.455978
FADS1 fatty acid desaturase 1 0.454093
TTR transthyretin 0.453716
IL1RAP interleukin 1 receptor accessory protein 0.451454
PPP2R2A protein phosphatase 2, regulatory subunit B, alpha 0.450324
IGFBP3 insulin-like growth factor binding protein 3 0.430393
CPS1 carbamoyl-phosphate synthase 1, mitochondrial 0.429266
HES1 hes family bHLH transcription factor 1 0.427765
S100A4 S100 calcium binding protein A4 0.424014
MMP2 matrix metallopeptidase 2 0.421016
VPS33B vacuolar protein sorting 33 homolog B (yeast) 0.415398
TIMP2 TIMP metallopeptidase inhibitor 2 0.41465
IGF1 insulin-like growth factor 1 (somatomedin C) 0.406798
BCS1L BC1 (ubiquinol-cytochrome c reductase) synthesis-like 0.402318
TLR8 toll-like receptor 8 0.398962
GHR growth hormone receptor 0.398589
PPP2R2B protein phosphatase 2, regulatory subunit B, beta 0.389281
CABIN1 calcineurin binding protein 1 0.378514
MMP7 matrix metallopeptidase 7 0.377031
LIN9 lin-9 DREAM MuvB core complex component 0.36741
RRAS related RAS viral (r-ras) oncogene homolog 0.364824
XPR1 xenotropic and polytropic retrovirus receptor 1 0.36187
IGFBP2 insulin-like growth factor binding protein 2, 36kDa 0.361133
DHRS9 dehydrogenase/reductase (SDR family) member 9 0.353763
PCNA proliferating cell nuclear antigen 0.347879
ZFPM2 zinc finger protein, FOG family member 2 0.341272
CYP7A1 cytochrome P450, family 7, subfamily A, polypeptide 1 0.340539
TNFSF10 tumor necrosis factor (ligand) superfamily, member 10 0.329565
HLA-DPB1 major histocompatibility complex, class II, DP beta 1 0.325916
ANGPTL7 angiopoietin-like 7 0.32373
PER2 period circadian clock 2 0.323365
PTER phosphotriesterase related 0.321909
UGT2B4 UDP glucuronosyltransferase 2 family, polypeptide B4 0.320454
PTPRF protein tyrosine phosphatase, receptor type, F 0.318272
IRF9 interferon regulatory factor 9 0.302337
DMRTA1 DMRT-like family A1 0.299092
KRT8 keratin 8, type II 0.297651
ITGB2 integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) 0.297291
PEG3 paternally expressed 3 0.295851
SLC26A6 solute carrier family 26 (anion exchanger), member 6 0.295851
PER3 period circadian clock 3 0.291539
CELA1 chymotrypsin-like elastase family, member 1 0.290821
SPINT1 serine peptidase inhibitor, Kunitz type 1 0.286877
NOTCH2 notch 2 0.28616
NOTCH2NL notch 2 N-terminal like 0.283655
CELA3B chymotrypsin-like elastase family, member 3B 0.28151
PRKCZ protein kinase C, zeta 0.280439
FOXF1 forkhead box F1 0.279724
IGFBP1 insulin-like growth factor binding protein 1 0.267977
PER1 period circadian clock 1 0.265494
RNASEH2A ribonuclease H2, subunit A 0.264785
MIR22 microRNA 22 0.256299
DDX58 DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 0.256299
MBD4 methyl-CpG binding domain protein 4 0.256299
MASP1 mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor) 0.255241
VCAM1 vascular cell adhesion molecule 1 0.253831
CXCL10 chemokine (C-X-C motif) ligand 10 0.252774
CXCL8 chemokine (C-X-C motif) ligand 8 0.248905
SLC50A1 solute carrier family 50 (sugar efflux transporter), member 1 0.243295
TNF tumor necrosis factor 0.242245
HLA-A major histocompatibility complex, class I, A 0.224196
AP1M2 adaptor-related protein complex 1, mu 2 subunit 0.222822
MFN1 mitofusin 1 0.218715
C3AR1 complement component 3a receptor 1 0.218034
SOX17 SRY (sex determining region Y)-box 17 0.210925
INVS inversin 0.20658
PEG10 paternally expressed 10 0.206248
ACTB actin, beta 0.204263
SELE selectin E 0.202618
CD79A CD79a molecule, immunoglobulin-associated alpha 0.202618
RBP1 retinol binding protein 1, cellular 0.198064
AP2M1 adaptor-related protein complex 2, mu 1 subunit 0.194232
HGFAC HGF activator 0.191719
TMPRSS15 transmembrane protease, serine 15 0.191408
FASLG Fas ligand (TNF superfamily, member 6) 0.191097
FN1 fibronectin 1 0.187113
HLA-C major histocompatibility complex, class I, C 0.18472
AZU1 azurocidin 1 0.183248
THEM4 thioesterase superfamily member 4 0.183248
DHCR24 24-dehydrocholesterol reductase 0.181222
CCL2 chemokine (C-C motif) ligand 2 0.180652
ACTG1 actin gamma 1 0.17952
ERAS ES cell expressed Ras 0.17896
ABCC4 ATP-binding cassette, sub-family C (CFTR/MRP), member 4 0.175679
RIPK4 receptor-interacting serine-threonine kinase 4 0.175146
GRHL1 grainyhead-like 1 (Drosophila) 0.174617
CDK11A cyclin-dependent kinase 11A 0.172544
USF2 upstream transcription factor 2, c-fos interacting 0.172291
GALK1 galactokinase 1 0.171036
LAMC2 laminin, gamma 2 0.170299
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.170054
PPARGC1B peroxisome proliferator-activated receptor gamma, coactivator 1 beta 0.169812
SLC10A2 solute carrier family 10 (sodium/bile acid cotransporter), member 2 0.16933
MMP9 matrix metallopeptidase 9 0.169091
STAT1 signal transducer and activator of transcription 1, 91kDa 0.168381
B3GAT2 beta-1,3-glucuronyltransferase 2 0.166095
LIG1 ligase I, DNA, ATP-dependent 0.165874
PIDD1 p53-induced death domain protein 1 0.164571
IL12B interleukin 12B 0.163111
LAP3 leucine aminopeptidase 3 0.158434