biology Gene Set

Dataset GeneRIF Biological Term Annotations
Category structural or functional annotations
Type biological term
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Genes

390 genes co-occuring with the biological term biology in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.

Symbol Name
ABCB1 ATP-binding cassette, sub-family B (MDR/TAP), member 1
ABCG2 ATP-binding cassette, sub-family G (WHITE), member 2 (Junior blood group)
ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase
ADAD1 adenosine deaminase domain containing 1 (testis-specific)
ADIPOQ adiponectin, C1Q and collagen domain containing
ADIPOR1 adiponectin receptor 1
ADORA2B adenosine A2b receptor
AHR aryl hydrocarbon receptor
AIPL1 aryl hydrocarbon receptor interacting protein-like 1
ALCAM activated leukocyte cell adhesion molecule
ALK anaplastic lymphoma receptor tyrosine kinase
ANGPT1 angiopoietin 1
ANGPT2 angiopoietin 2
ANPEP alanyl (membrane) aminopeptidase
APOA1 apolipoprotein A-I
APOBEC3C apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C
APOL1 apolipoprotein L, 1
APP amyloid beta (A4) precursor protein
AQP1 aquaporin 1 (Colton blood group)
AQP4 aquaporin 4
AR androgen receptor
AREG amphiregulin
ARHGEF7 Rho guanine nucleotide exchange factor (GEF) 7
ARNT aryl hydrocarbon receptor nuclear translocator
ASIC1 acid sensing (proton gated) ion channel 1
ATG16L1 autophagy related 16-like 1 (S. cerevisiae)
ATP2A2 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
AURKB aurora kinase B
BACE1 beta-site APP-cleaving enzyme 1
BCL2 B-cell CLL/lymphoma 2
BCL2L1 BCL2-like 1
BCL6 B-cell CLL/lymphoma 6
BDNF brain-derived neurotrophic factor
BEX2 brain expressed X-linked 2
BIRC5 baculoviral IAP repeat containing 5
BOLA1 bolA family member 1
BOLA2 bolA family member 2
BOLA3 bolA family member 3
BRCA1 breast cancer 1, early onset
BRCA2 breast cancer 2, early onset
CALCA calcitonin-related polypeptide alpha
CALR calreticulin
CASP3 caspase 3, apoptosis-related cysteine peptidase
CASP8 caspase 8, apoptosis-related cysteine peptidase
CAV1 caveolin 1, caveolae protein, 22kDa
CBL Cbl proto-oncogene, E3 ubiquitin protein ligase
CCL5 chemokine (C-C motif) ligand 5
CCNB1 cyclin B1
CCR5 chemokine (C-C motif) receptor 5 (gene/pseudogene)
CD1A CD1a molecule
CD22 CD22 molecule
CD28 CD28 molecule
CD44 CD44 molecule (Indian blood group)
CD80 CD80 molecule
CD86 CD86 molecule
CD99 CD99 molecule
CDC23 cell division cycle 23
CDC45 cell division cycle 45
CDK1 cyclin-dependent kinase 1
CEACAM1 carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)
CEP290 centrosomal protein 290kDa
CFHR1 complement factor H-related 1
CFLAR CASP8 and FADD-like apoptosis regulator
CFTR cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)
CIC capicua transcriptional repressor
CKAP4 cytoskeleton-associated protein 4
CLEC4A C-type lectin domain family 4, member A
CLOCK clock circadian regulator
COMT catechol-O-methyltransferase
COX1
CR1 complement component (3b/4b) receptor 1 (Knops blood group)
CRHR1 corticotropin releasing hormone receptor 1
CRHR2 corticotropin releasing hormone receptor 2
CRK v-crk avian sarcoma virus CT10 oncogene homolog
CRLF2 cytokine receptor-like factor 2
CSF1 colony stimulating factor 1 (macrophage)
CSNK2A1 casein kinase 2, alpha 1 polypeptide
CTBP1 C-terminal binding protein 1
CTCF CCCTC-binding factor (zinc finger protein)
CTGF connective tissue growth factor
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa
CUL3 cullin 3
CX3CL1 chemokine (C-X3-C motif) ligand 1
CX3CR1 chemokine (C-X3-C motif) receptor 1
CXADR coxsackie virus and adenovirus receptor
CXCL12 chemokine (C-X-C motif) ligand 12
CXCR2 chemokine (C-X-C motif) receptor 2
CXCR4 chemokine (C-X-C motif) receptor 4
CYP2J2 cytochrome P450, family 2, subfamily J, polypeptide 2
DAG1 dystroglycan 1 (dystrophin-associated glycoprotein 1)
DDX3X DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked
DEK DEK proto-oncogene
DFFA DNA fragmentation factor, 45kDa, alpha polypeptide
DIABLO diablo, IAP-binding mitochondrial protein
DKK3 dickkopf WNT signaling pathway inhibitor 3
DNAJC13 DnaJ (Hsp40) homolog, subfamily C, member 13
DPP4 dipeptidyl-peptidase 4
DPYSL2 dihydropyrimidinase-like 2
DYRK1B dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B
E2F1 E2F transcription factor 1
E2F2 E2F transcription factor 2
EFNB2 ephrin-B2
EGFR epidermal growth factor receptor
EGLN1 egl-9 family hypoxia-inducible factor 1
EGLN2 egl-9 family hypoxia-inducible factor 2
EID1 EP300 interacting inhibitor of differentiation 1
EIF3E eukaryotic translation initiation factor 3, subunit E
EPOR erythropoietin receptor
ERBB2 erb-b2 receptor tyrosine kinase 2
ESR1 estrogen receptor 1
ESR2 estrogen receptor 2 (ER beta)
ETV6 ets variant 6
EXT1 exostosin glycosyltransferase 1
EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit
EZR ezrin
F12 coagulation factor XII (Hageman factor)
F8 coagulation factor VIII, procoagulant component
FBXW7 F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase
FCGRT Fc fragment of IgG, receptor, transporter, alpha
FGF1 fibroblast growth factor 1 (acidic)
FGFR2 fibroblast growth factor receptor 2
FHL2 four and a half LIM domains 2
FHOD1 formin homology 2 domain containing 1
FIGF c-fos induced growth factor (vascular endothelial growth factor D)
FLT1 fms-related tyrosine kinase 1
FOXM1 forkhead box M1
FOXO1 forkhead box O1
FOXP3 forkhead box P3
FUBP1 far upstream element (FUSE) binding protein 1
FYN FYN proto-oncogene, Src family tyrosine kinase
FZD2 frizzled class receptor 2
GCG glucagon
GCSAM germinal center-associated, signaling and motility
GDF5 growth differentiation factor 5
GDNF glial cell derived neurotrophic factor
GFER growth factor, augmenter of liver regeneration
GHRHR growth hormone releasing hormone receptor
GPER1 G protein-coupled estrogen receptor 1
GPR17 G protein-coupled receptor 17
GPR18 G protein-coupled receptor 18
GPR183 G protein-coupled receptor 183
GPX1 glutathione peroxidase 1
GRP gastrin-releasing peptide
GRPR gastrin-releasing peptide receptor
GSTP1 glutathione S-transferase pi 1
GUCY1A3 guanylate cyclase 1, soluble, alpha 3
GZMB granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)
H2AFZ H2A histone family, member Z
HAND2-AS1 HAND2 antisense RNA 1 (head to head)
HBEGF heparin-binding EGF-like growth factor
HDAC6 histone deacetylase 6
HEXB hexosaminidase B (beta polypeptide)
HHIP hedgehog interacting protein
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)
HLA-B major histocompatibility complex, class I, B
HMGA2 high mobility group AT-hook 2
HMGB1 high mobility group box 1
HN1 hematological and neurological expressed 1
HNF1A HNF1 homeobox A
HNF1B HNF1 homeobox B
HP haptoglobin
HPSE heparanase
HRAS Harvey rat sarcoma viral oncogene homolog
HSF1 heat shock transcription factor 1
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1
HSPA1A heat shock 70kDa protein 1A
HSPB1 heat shock 27kDa protein 1
HSPB8 heat shock 22kDa protein 8
HTR2C 5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled
ID4 inhibitor of DNA binding 4, dominant negative helix-loop-helix protein
IDH1 isocitrate dehydrogenase 1 (NADP+), soluble
IDH2 isocitrate dehydrogenase 2 (NADP+), mitochondrial
IFNL1 interferon, lambda 1
IFNL2 interferon, lambda 2
IFNL3 interferon, lambda 3
IGF1 insulin-like growth factor 1 (somatomedin C)
IGF1R insulin-like growth factor 1 receptor
IGFBP5 insulin-like growth factor binding protein 5
IL15 interleukin 15
IL19 interleukin 19
IL1A interleukin 1, alpha
IL1B interleukin 1, beta
IL2 interleukin 2
IL20 interleukin 20
IL21 interleukin 21
IL24 interleukin 24
IL6 interleukin 6
IL6R interleukin 6 receptor
ILK integrin-linked kinase
INSR insulin receptor
IREB2 iron-responsive element binding protein 2
IRF8 interferon regulatory factor 8
ITGA2B integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41)
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)
ITGB3 integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)
JAK2 Janus kinase 2
KCNQ2 potassium channel, voltage gated KQT-like subfamily Q, member 2
KDM1A lysine (K)-specific demethylase 1A
KDR kinase insert domain receptor
KIAA1109 KIAA1109
KISS1 KiSS-1 metastasis-suppressor
KISS1R KISS1 receptor
KIT v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog
KLF4 Kruppel-like factor 4 (gut)
KLF6 Kruppel-like factor 6
KLF9 Kruppel-like factor 9
KLK3 kallikrein-related peptidase 3
KLK4 kallikrein-related peptidase 4
KLRB1 killer cell lectin-like receptor subfamily B, member 1
KMT2A lysine (K)-specific methyltransferase 2A
KRAS Kirsten rat sarcoma viral oncogene homolog
LEF1 lymphoid enhancer-binding factor 1
LGALS3 lectin, galactoside-binding, soluble, 3
LGALS4 lectin, galactoside-binding, soluble, 4
LGALS7 lectin, galactoside-binding, soluble, 7
LGALS9 lectin, galactoside-binding, soluble, 9
LGR5 leucine-rich repeat containing G protein-coupled receptor 5
LIF leukemia inhibitory factor
LIN28A lin-28 homolog A (C. elegans)
LIPG lipase, endothelial
LPA lipoprotein, Lp(a)
LRRK2 leucine-rich repeat kinase 2
MAF v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog
MAP3K1 mitogen-activated protein kinase kinase kinase 1, E3 ubiquitin protein ligase
MAP3K11 mitogen-activated protein kinase kinase kinase 11
MAP3K2 mitogen-activated protein kinase kinase kinase 2
MAPK1 mitogen-activated protein kinase 1
MAPT microtubule-associated protein tau
MC4R melanocortin 4 receptor
MCL1 myeloid cell leukemia 1
MDC1 mediator of DNA-damage checkpoint 1
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase
MECOM MDS1 and EVI1 complex locus
MET MET proto-oncogene, receptor tyrosine kinase
MIF macrophage migration inhibitory factor (glycosylation-inhibiting factor)
MIR145 microRNA 145
MIR17HG miR-17-92 cluster host gene
MIR183 microRNA 183
MIR199A1 microRNA 199a-1
MIR223 microRNA 223
MIR34C microRNA 34c
MITF microphthalmia-associated transcription factor
MTCH2 mitochondrial carrier 2
MTMR2 myotubularin related protein 2
MTOR mechanistic target of rapamycin (serine/threonine kinase)
MUC1 mucin 1, cell surface associated
MUC4 mucin 4, cell surface associated
MYC v-myc avian myelocytomatosis viral oncogene homolog
MYCN v-myc avian myelocytomatosis viral oncogene neuroblastoma derived homolog
NAF1 nuclear assembly factor 1 ribonucleoprotein
NANOG Nanog homeobox
NCSTN nicastrin
NEGR1 neuronal growth regulator 1
NES nestin
NF2 neurofibromin 2 (merlin)
NFIX nuclear factor I/X (CCAAT-binding transcription factor)
NFKB1 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1
NGFR nerve growth factor receptor
NOS3 nitric oxide synthase 3 (endothelial cell)
NOTCH1 notch 1
NOTCH3 notch 3
NOTCH4 notch 4
NPAP1 nuclear pore associated protein 1
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin)
NR0B1 nuclear receptor subfamily 0, group B, member 1
NR1H3 nuclear receptor subfamily 1, group H, member 3
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)
NR4A1 nuclear receptor subfamily 4, group A, member 1
NRG1 neuregulin 1
NRTN neurturin
NTRK1 neurotrophic tyrosine kinase, receptor, type 1
NTRK2 neurotrophic tyrosine kinase, receptor, type 2
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1
NUCLEOLIN nucleolin multifunctional protein
OBFC1 oligonucleotide/oligosaccharide-binding fold containing 1
OXTR oxytocin receptor
P2RY6 pyrimidinergic receptor P2Y, G-protein coupled, 6
P4HTM prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)
PAPPA pregnancy-associated plasma protein A, pappalysin 1
PAPSS1 3'-phosphoadenosine 5'-phosphosulfate synthase 1
PARK2 parkin RBR E3 ubiquitin protein ligase
PDGFC platelet derived growth factor C
PDZD11 PDZ domain containing 11
PGLYRP3 peptidoglycan recognition protein 3
PGLYRP4 peptidoglycan recognition protein 4
PGR progesterone receptor
PIBF1 progesterone immunomodulatory binding factor 1
PIP prolactin-induced protein
PLAT plasminogen activator, tissue
PLAUR plasminogen activator, urokinase receptor
POMC proopiomelanocortin
POU5F1 POU class 5 homeobox 1
PPARG peroxisome proliferator-activated receptor gamma
PRKCE protein kinase C, epsilon
PRL prolactin
PRLR prolactin receptor
PRNP prion protein
PSEN1 presenilin 1
PSENEN presenilin enhancer gamma secretase subunit
PTEN phosphatase and tensin homolog
PTGER3 prostaglandin E receptor 3 (subtype EP3)
PTHLH parathyroid hormone-like hormone
PTP4A3 protein tyrosine phosphatase type IVA, member 3
RARA retinoic acid receptor, alpha
RB1 retinoblastoma 1
REG1A regenerating islet-derived 1 alpha
REG1B regenerating islet-derived 1 beta
RET ret proto-oncogene
RETN resistin
RETSAT retinol saturase (all-trans-retinol 13,14-reductase)
RHEB Ras homolog enriched in brain
RNASEL ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)
RTEL1 regulator of telomere elongation helicase 1
RUNX1 runt-related transcription factor 1
SBF2 SET binding factor 2
SCARA3 scavenger receptor class A, member 3
SCLT1 sodium channel and clathrin linker 1
SCNN1A sodium channel, non voltage gated 1 alpha subunit
SCNN1G sodium channel, non voltage gated 1 gamma subunit
SCUBE3 signal peptide, CUB domain, EGF-like 3
SDC1 syndecan 1
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1
SERPINF1 serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1
SFTPA1 surfactant protein A1
SHH sonic hedgehog
SIM2 single-minded family bHLH transcription factor 2
SIRPA signal-regulatory protein alpha
SLC12A2 solute carrier family 12 (sodium/potassium/chloride transporter), member 2
SLC19A1 solute carrier family 19 (folate transporter), member 1
SLC28A1 solute carrier family 28 (concentrative nucleoside transporter), member 1
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3
SLC3A2 solute carrier family 3 (amino acid transporter heavy chain), member 2
SLC40A1 solute carrier family 40 (iron-regulated transporter), member 1
SLC5A6 solute carrier family 5 (sodium/multivitamin and iodide cotransporter), member 6
SOCS3 suppressor of cytokine signaling 3
SOD2 superoxide dismutase 2, mitochondrial
SOX10 SRY (sex determining region Y)-box 10
SOX2 SRY (sex determining region Y)-box 2
SP1 Sp1 transcription factor
SPAG9 sperm associated antigen 9
SPEN spen family transcriptional repressor
SPP1 secreted phosphoprotein 1
SRA1 steroid receptor RNA activator 1
TACR1 tachykinin receptor 1
TBC1D32 TBC1 domain family, member 32
TCEB1 transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C)
TET2 tet methylcytosine dioxygenase 2
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)
TGFB1 transforming growth factor, beta 1
TGM2 transglutaminase 2
TIMP1 TIMP metallopeptidase inhibitor 1
TLR4 toll-like receptor 4
TMEM18 transmembrane protein 18
TNFAIP3 tumor necrosis factor, alpha-induced protein 3
TNFRSF11B tumor necrosis factor receptor superfamily, member 11b
TNFRSF12A tumor necrosis factor receptor superfamily, member 12A
TNFRSF13C tumor necrosis factor receptor superfamily, member 13C
TNFRSF14 tumor necrosis factor receptor superfamily, member 14
TNFRSF4 tumor necrosis factor receptor superfamily, member 4
TNFSF11 tumor necrosis factor (ligand) superfamily, member 11
TNFSF12 tumor necrosis factor (ligand) superfamily, member 12
TNFSF13B tumor necrosis factor (ligand) superfamily, member 13b
TNFSF9 tumor necrosis factor (ligand) superfamily, member 9
TOX3 TOX high mobility group box family member 3
TP53 tumor protein p53
TP53BP1 tumor protein p53 binding protein 1
TP63 tumor protein p63
TP73 tumor protein p73
TRA2B transformer 2 beta homolog (Drosophila)
TREX1 three prime repair exonuclease 1
TRIB1 tribbles pseudokinase 1
TRPM6 transient receptor potential cation channel, subfamily M, member 6
TRPM7 transient receptor potential cation channel, subfamily M, member 7
TRPV1 transient receptor potential cation channel, subfamily V, member 1
TWIST1 twist family bHLH transcription factor 1
TXNDC5 thioredoxin domain containing 5 (endoplasmic reticulum)
UBD ubiquitin D
UBE2I ubiquitin-conjugating enzyme E2I
UBE3A ubiquitin protein ligase E3A
UCHL1 ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase)
VEGFA vascular endothelial growth factor A
VEGFC vascular endothelial growth factor C
VIM vimentin
VOPP1 vesicular, overexpressed in cancer, prosurvival protein 1
WISP3 WNT1 inducible signaling pathway protein 3
WRN Werner syndrome, RecQ helicase-like
WT1 Wilms tumor 1
XDH xanthine dehydrogenase
ZCCHC11 zinc finger, CCHC domain containing 11
ZNF804A zinc finger protein 804A