box Gene Set

Dataset GeneRIF Biological Term Annotations
Category structural or functional annotations
Type biological term
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Genes

227 genes co-occuring with the biological term box in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.

Symbol Name
ACOT13 acyl-CoA thioesterase 13
ACVRL1 activin A receptor type II-like 1
AGER advanced glycosylation end product-specific receptor
AKT2 v-akt murine thymoma viral oncogene homolog 2
ALYREF Aly/REF export factor
APBA2 amyloid beta (A4) precursor protein-binding, family A, member 2
APLP1 amyloid beta (A4) precursor-like protein 1
APLP2 amyloid beta (A4) precursor-like protein 2
APP amyloid beta (A4) precursor protein
AR androgen receptor
ARID1A AT rich interactive domain 1A (SWI-like)
ASPSCR1 alveolar soft part sarcoma chromosome region, candidate 1
AURKA aurora kinase A
AURKB aurora kinase B
AURKC aurora kinase C
B2M beta-2-microglobulin
BCL11A B-cell CLL/lymphoma 11A (zinc finger protein)
BMI1 BMI1 proto-oncogene, polycomb ring finger
BMP2 bone morphogenetic protein 2
BRD2 bromodomain containing 2
BTRC beta-transducin repeat containing E3 ubiquitin protein ligase
CAND1 cullin-associated and neddylation-dissociated 1
CAV1 caveolin 1, caveolae protein, 22kDa
CCL25 chemokine (C-C motif) ligand 25
CCNA2 cyclin A2
CCNB1 cyclin B1
CCND1 cyclin D1
CCNG1 cyclin G1
CCNK cyclin K
CD1D CD1d molecule
CD4 CD4 molecule
CD8A CD8a molecule
CDC20 cell division cycle 20
CDK1 cyclin-dependent kinase 1
CDX2 caudal type homeobox 2
CEBPB CCAAT/enhancer binding protein (C/EBP), beta
CENPB centromere protein B, 80kDa
CHEK2 checkpoint kinase 2
CHI3L1 chitinase 3-like 1 (cartilage glycoprotein-39)
CIITA class II, major histocompatibility complex, transactivator
CKAP2 cytoskeleton associated protein 2
CKS1B CDC28 protein kinase regulatory subunit 1B
COL10A1 collagen, type X, alpha 1
CREBBP CREB binding protein
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa
CUL2 cullin 2
CXCL8 chemokine (C-X-C motif) ligand 8
CYP1A2 cytochrome P450, family 1, subfamily A, polypeptide 2
CYP2A6 cytochrome P450, family 2, subfamily A, polypeptide 6
DBF4 DBF4 zinc finger
DCP1A decapping mRNA 1A
DDB1 damage-specific DNA binding protein 1, 127kDa
DDX1 DEAD (Asp-Glu-Ala-Asp) box helicase 1
DDX39A DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A
DDX3X DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked
DDX3Y DEAD (Asp-Glu-Ala-Asp) box helicase 3, Y-linked
DDX42 DEAD (Asp-Glu-Ala-Asp) box helicase 42
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5
DDX54 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54
DDX6 DEAD (Asp-Glu-Ala-Asp) box helicase 6
DEFA1 defensin, alpha 1
DIO2 deiodinase, iodothyronine, type II
DPP4 dipeptidyl-peptidase 4
EDC3 enhancer of mRNA decapping 3
EGFR epidermal growth factor receptor
EIF4A3 eukaryotic translation initiation factor 4A3
ELK1 ELK1, member of ETS oncogene family
ESR1 estrogen receptor 1
FAS Fas cell surface death receptor
FBL fibrillarin
FBXO18 F-box protein, helicase, 18
FGFR2 fibroblast growth factor receptor 2
FMO3 flavin containing monooxygenase 3
FMR1 fragile X mental retardation 1
FOXD4 forkhead box D4
FOXE1 forkhead box E1
FOXF1 forkhead box F1
FOXM1 forkhead box M1
FOXO1 forkhead box O1
FOXO3 forkhead box O3
FOXO4 forkhead box O4
FOXP1 forkhead box P1
FOXP3 forkhead box P3
FOXQ1 forkhead box Q1
FSHB follicle stimulating hormone, beta polypeptide
FZR1 fizzy/cell division cycle 20 related 1 (Drosophila)
GAR1 GAR1 ribonucleoprotein
GH1 growth hormone 1
GJB2 gap junction protein, beta 2, 26kDa
GLS glutaminase
GNMT glycine N-methyltransferase
GTF2B general transcription factor IIB
HABP4 hyaluronan binding protein 4
HBB hemoglobin, beta
HBG1 hemoglobin, gamma A
HDAC1 histone deacetylase 1
HGF hepatocyte growth factor (hepapoietin A; scatter factor)
HMGB1 high mobility group box 1
HMGB2 high mobility group box 2
HOXA11 homeobox A11
ID1 inhibitor of DNA binding 1, dominant negative helix-loop-helix protein
ID3 inhibitor of DNA binding 3, dominant negative helix-loop-helix protein
IFNG interferon, gamma
IL10 interleukin 10
IL2 interleukin 2
IL2RA interleukin 2 receptor, alpha
KLF6 Kruppel-like factor 6
LDHA lactate dehydrogenase A
LEP leptin
LIM2 lens intrinsic membrane protein 2, 19kDa
MAP1A microtubule-associated protein 1A
MAPK1 mitogen-activated protein kinase 1
MAPK14 mitogen-activated protein kinase 14
MAPK8 mitogen-activated protein kinase 8
MAPK8IP1 mitogen-activated protein kinase 8 interacting protein 1
MAS1 MAS1 proto-oncogene, G protein-coupled receptor
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase
MED1 mediator complex subunit 1
MICB MHC class I polypeptide-related sequence B
MIR182 microRNA 182
MIR194-1 microRNA 194-1
MIR34A microRNA 34a
MIR96 microRNA 96
MMP3 matrix metallopeptidase 3
MPL MPL proto-oncogene, thrombopoietin receptor
MTOR mechanistic target of rapamycin (serine/threonine kinase)
MYC v-myc avian myelocytomatosis viral oncogene homolog
MYCN v-myc avian myelocytomatosis viral oncogene neuroblastoma derived homolog
NCOA2 nuclear receptor coactivator 2
NEWENTRY Record to support submission of GeneRIFs for a gene not in Gene (human; man).
NFKB1 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1
NFYA nuclear transcription factor Y, alpha
NFYB nuclear transcription factor Y, beta
NFYC nuclear transcription factor Y, gamma
NHP2L1 NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)
NOP56 NOP56 ribonucleoprotein
NOP58 NOP58 ribonucleoprotein
NOX4 NADPH oxidase 4
NR0B2 nuclear receptor subfamily 0, group B, member 2
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)
PAX2 paired box 2
PAX3 paired box 3
PAX6 paired box 6
PAX8 paired box 8
PAX9 paired box 9
PCTP phosphatidylcholine transfer protein
PCYT2 phosphate cytidylyltransferase 2, ethanolamine
PGR progesterone receptor
PKI55 DKFZp434H1419
PLK1 polo-like kinase 1
PLK3 polo-like kinase 3
POU5F1 POU class 5 homeobox 1
PPARA peroxisome proliferator-activated receptor alpha
PPARG peroxisome proliferator-activated receptor gamma
PPP1R16B protein phosphatase 1, regulatory subunit 16B
PPP2R2A protein phosphatase 2, regulatory subunit B, alpha
PRMT1 protein arginine methyltransferase 1
PRNP prion protein
PROP1 PROP paired-like homeobox 1
PTBP2 polypyrimidine tract binding protein 2
RALA v-ral simian leukemia viral oncogene homolog A (ras related)
RBBP8 retinoblastoma binding protein 8
RFX1 regulatory factor X, 1 (influences HLA class II expression)
RFX3 regulatory factor X, 3 (influences HLA class II expression)
RGS16 regulator of G-protein signaling 16
RGS4 regulator of G-protein signaling 4
RHOB ras homolog family member B
RN7SL3 RNA, 7SL, cytoplasmic 3
RPL13A ribosomal protein L13a
RPS7 ribosomal protein S7
RTEL1 regulator of telomere elongation helicase 1
RUNX2 runt-related transcription factor 2
RUVBL1 RuvB-like AAA ATPase 1
RUVBL2 RuvB-like AAA ATPase 2
RYBP RING1 and YY1 binding protein
SEMA3F sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
SERBP1 SERPINE1 mRNA binding protein 1
SERPINA1 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1
SGK1 serum/glucocorticoid regulated kinase 1
SKP2 S-phase kinase-associated protein 2, E3 ubiquitin protein ligase
SLC12A4 solute carrier family 12 (potassium/chloride transporter), member 4
SLC2A4 solute carrier family 2 (facilitated glucose transporter), member 4
SLC38A2 solute carrier family 38, member 2
SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
SMN1 survival of motor neuron 1, telomeric
SOCS5 suppressor of cytokine signaling 5
SOD1 superoxide dismutase 1, soluble
SOX2 SRY (sex determining region Y)-box 2
SOX4 SRY (sex determining region Y)-box 4
SOX9 SRY (sex determining region Y)-box 9
SP1 Sp1 transcription factor
SRF serum response factor (c-fos serum response element-binding transcription factor)
SRPK1 SRSF protein kinase 1
SRPX2 sushi-repeat containing protein, X-linked 2
SRY sex determining region Y
STAR steroidogenic acute regulatory protein
STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase
TAF1 TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa
TBP TATA box binding protein
TBX1 T-box 1
TBX2 T-box 2
TCF4 transcription factor 4
TERC telomerase RNA component
TFAM transcription factor A, mitochondrial
TGFB1 transforming growth factor, beta 1
TGFBR2 transforming growth factor, beta receptor II (70/80kDa)
THBS1 thrombospondin 1
TIAM1 T-cell lymphoma invasion and metastasis 1
TIMP1 TIMP metallopeptidase inhibitor 1
TLR4 toll-like receptor 4
TNF tumor necrosis factor
TNIP1 TNFAIP3 interacting protein 1
TOX thymocyte selection-associated high mobility group box
TP53 tumor protein p53
TRIM16 tripartite motif containing 16
TRIM28 tripartite motif containing 28
TRPV1 transient receptor potential cation channel, subfamily V, member 1
TRUB1 TruB pseudouridine (psi) synthase family member 1
TWIST1 twist family bHLH transcription factor 1
UBE2D3 ubiquitin-conjugating enzyme E2D 3
UBE4B ubiquitination factor E4B
UBTF upstream binding transcription factor, RNA polymerase I
VCP valosin containing protein
WHSC1 Wolf-Hirschhorn syndrome candidate 1
WNT4 wingless-type MMTV integration site family, member 4
YY1 YY1 transcription factor
ZNF274 zinc finger protein 274