bulb Gene Set

Dataset TISSUES Text-mining Tissue Protein Expression Evidence Scores
Category structural or functional annotations
Type tissue
Description A resting stage of a plant (as the lily, onion, hyacinth, or tulip) that is usually formed underground and consists of a short stem base bearing one or more buds enclosed in overlapping membranous or fleshy leaves. (BRENDA Tissue and Enzyme Source Ontology, BTO_0000159)
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Genes

318 proteins co-occuring with the tissue bulb in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset.

Symbol Name Standardized Value
PMP22 peripheral myelin protein 22 1.71639
MPZ myelin protein zero 1.69649
GAST gastrin 1.63306
KRTAP4-3 keratin associated protein 4-3 1.50953
GDAP1 ganglioside induced differentiation associated protein 1 1.48833
KRT71 keratin 71, type II 1.38688
TYR tyrosinase 1.36906
KRTAP6-1 keratin associated protein 6-1 1.30883
KRT85 keratin 85, type II 1.30208
KRT74 keratin 74, type II 1.25235
KRTAP5-5 keratin associated protein 5-5 1.23227
GJB1 gap junction protein, beta 1, 32kDa 1.19756
KRT35 keratin 35, type I 1.18512
KRT73 keratin 73, type II 1.14653
PRX periaxin 1.13412
MTMR2 myotubularin related protein 2 1.11818
KRT27 keratin 27, type I 1.1173
KRT31 keratin 31, type I 1.08766
KRT25 keratin 25, type I 1.07794
KRT81 keratin 81, type II 1.05589
NDRG1 N-myc downstream regulated 1 1.02469
KRT28 keratin 28, type I 1.01418
TH tyrosine hydroxylase 0.983688
GPRC5D G protein-coupled receptor, class C, group 5, member D 0.946517
KRT86 keratin 86, type II 0.942645
TYRP1 tyrosinase-related protein 1 0.92805
KRT15 keratin 15, type I 0.927192
ATP12A ATPase, H+/K+ transporting, nongastric, alpha polypeptide 0.918633
ATP4A ATPase, H+/K+ exchanging, alpha polypeptide 0.916496
KRT26 keratin 26, type I 0.912653
TCHH trichohyalin 0.910946
SH3YL1 SH3 and SYLF domain containing 1 0.904127
SBF2 SET binding factor 2 0.89817
CCPG1 cell cycle progression 1 0.887981
HOXC12 homeobox C12 0.856732
EGR2 early growth response 2 0.844126
DSG4 desmoglein 4 0.824013
KRT17 keratin 17, type I 0.793543
OR6Y1 olfactory receptor, family 6, subfamily Y, member 1 0.790212
DYNC2LI1 dynein, cytoplasmic 2, light intermediate chain 1 0.781478
SST somatostatin 0.779816
CRP C-reactive protein, pentraxin-related 0.772344
KRT83 keratin 83, type II 0.766125
ANOS1 anosmin 1 0.75495
CALB2 calbindin 2 0.753297
WNT8A wingless-type MMTV integration site family, member 8A 0.74834
TDP1 tyrosyl-DNA phosphodiesterase 1 0.747102
GPRC5C G protein-coupled receptor, class C, group 5, member C 0.740503
PTCH1 patched 1 0.73803
S100B S100 calcium binding protein B 0.71542
UMODL1 uromodulin-like 1 0.708041
TAAR5 trace amine associated receptor 5 0.708041
SFI1 Sfi1 homolog, spindle assembly associated (yeast) 0.707221
KRT72 keratin 72, type II 0.702308
TAC1 tachykinin, precursor 1 0.700262
KRT32 keratin 32, type I 0.697808
PDSS1 prenyl (decaprenyl) diphosphate synthase, subunit 1 0.688
UBR1 ubiquitin protein ligase E3 component n-recognin 1 0.679433
PIK3CA phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha 0.678617
CTXN3 cortexin 3 0.668436
KRTDAP keratinocyte differentiation-associated protein 0.662742
DCT dopachrome tautomerase 0.66071
KAZN kazrin, periplakin interacting protein 0.660304
SOX10 SRY (sex determining region Y)-box 10 0.65746
NEFL neurofilament, light polypeptide 0.657054
HSFX1 heat shock transcription factor family, X linked 1 0.655836
HSFX2 heat shock transcription factor family, X linked 2 0.655836
ARHGEF10 Rho guanine nucleotide exchange factor (GEF) 10 0.647316
ACHE acetylcholinesterase (Yt blood group) 0.638809
ENO2 enolase 2 (gamma, neuronal) 0.634358
CYTIP cytohesin 1 interacting protein 0.63274
MLN motilin 0.628697
GAD2 glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa) 0.628697
CAT catalase 0.621831
FGF5 fibroblast growth factor 5 0.612555
OPN3 opsin 3 0.610138
SCO2 SCO2 cytochrome c oxidase assembly protein 0.609735
ASL argininosuccinate lyase 0.604904
SHD Src homology 2 domain containing transforming protein D 0.599273
NGF nerve growth factor (beta polypeptide) 0.592845
INS insulin 0.584022
CALB1 calbindin 1, 28kDa 0.58322
SOD2 superoxide dismutase 2, mitochondrial 0.58282
AMT aminomethyltransferase 0.570021
HIF3A hypoxia inducible factor 3, alpha subunit 0.559254
TGFB2 transforming growth factor, beta 2 0.559254
PLEKHM3 pleckstrin homology domain containing, family M, member 3 0.556865
PTRF polymerase I and transcript release factor 0.553683
FOS FBJ murine osteosarcoma viral oncogene homolog 0.548517
GNGT2 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2 0.542566
MAG myelin associated glycoprotein 0.540981
CCK cholecystokinin 0.52635
CD79A CD79a molecule, immunoglobulin-associated alpha 0.522405
TCEA1 transcription elongation factor A (SII), 1 0.512564
GPRC5B G protein-coupled receptor, class C, group 5, member B 0.510992
EDC3 enhancer of mRNA decapping 3 0.50942
NPY neuropeptide Y 0.496483
COL7A1 collagen, type VII, alpha 1 0.492182
ALB albumin 0.490619
MITF microphthalmia-associated transcription factor 0.490229
HCCAT5 hepatocellular carcinoma associated transcript 5 (non-protein coding) 0.487886
CHD7 chromodomain helicase DNA binding protein 7 0.487496
BARX2 BARX homeobox 2 0.485156
CALCA calcitonin-related polypeptide alpha 0.483596
PVALB parvalbumin 0.476979
EHD2 EH-domain containing 2 0.471539
PACSIN2 protein kinase C and casein kinase substrate in neurons 2 0.466498
POMC proopiomelanocortin 0.465723
HERC2 HECT and RLD domain containing E3 ubiquitin protein ligase 2 0.460305
KRT38 keratin 38, type I 0.459532
FLII flightless I homolog (Drosophila) 0.459532
EDARADD EDAR-associated death domain 0.441426
GCG glucagon 0.438356
PMEL premelanosome protein 0.436055
NGFR nerve growth factor receptor 0.433757
ARVCF armadillo repeat gene deleted in velocardiofacial syndrome 0.431077
BBX bobby sox homolog (Drosophila) 0.430695
GPX1 glutathione peroxidase 1 0.430695
HSPB8 heat shock 22kDa protein 8 0.427636
CRYM crystallin, mu 0.424199
SYP synaptophysin 0.421529
HMGN1 high mobility group nucleosome binding domain 1 0.421529
MGAM maltase-glucoamylase 0.420004
KIF1BP KIF1 binding protein 0.418861
DBH dopamine beta-hydroxylase (dopamine beta-monooxygenase) 0.416957
GFAP glial fibrillary acidic protein 0.412391
PRB3 proline-rich protein BstNI subfamily 3 0.412391
HOXC13 homeobox C13 0.410491
CREB3L4 cAMP responsive element binding protein 3-like 4 0.410491
KLF7 Kruppel-like factor 7 (ubiquitous) 0.410111
ZMPSTE24 zinc metallopeptidase STE24 0.409731
RORA RAR-related orphan receptor A 0.405555
VIP vasoactive intestinal peptide 0.404418
LMNA lamin A/C 0.401386
AJAP1 adherens junctions associated protein 1 0.398357
GPX5 glutathione peroxidase 5 0.396465
UBR5 ubiquitin protein ligase E3 component n-recognin 5 0.395331
CHIT1 chitinase 1 (chitotriosidase) 0.394197
GPX4 glutathione peroxidase 4 0.392686
SPTB spectrin, beta, erythrocytic 0.390044
CRLF1 cytokine receptor-like factor 1 0.38326
GAP43 growth associated protein 43 0.381755
TGM3 transglutaminase 3 0.378748
RAB40AL RAB40A, member RAS oncogene family-like 0.376494
ITSN1 intersectin 1 (SH3 domain protein) 0.374993
CEBPZ CCAAT/enhancer binding protein (C/EBP), zeta 0.374993
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.374243
DNTT DNA nucleotidylexotransferase 0.374243
ADM adrenomedullin 0.373118
HLA-E major histocompatibility complex, class I, E 0.369373
LIF leukemia inhibitory factor 0.368998
POLG polymerase (DNA directed), gamma 0.36825
LCT lactase 0.367129
AGAP2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 2 0.36526
ALK anaplastic lymphoma receptor tyrosine kinase 0.36526
STRBP spermatid perinuclear RNA binding protein 0.363766
APTX aprataxin 0.358174
MMAA methylmalonic aciduria (cobalamin deficiency) cblA type 0.358174
ERCC3 excision repair cross-complementation group 3 0.354826
GRP gastrin-releasing peptide 0.353712
SETX senataxin 0.353712
AKAP13 A kinase (PRKA) anchor protein 13 0.353712
CLDN2 claudin 2 0.35334
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A 0.352969
BEX2 brain expressed X-linked 2 0.352227
FBN1 fibrillin 1 0.351856
TRAPPC9 trafficking protein particle complex 9 0.350743
TNC tenascin C 0.350372
IVL involucrin 0.348519
IL1A interleukin 1, alpha 0.348148
TRPC4AP transient receptor potential cation channel, subfamily C, member 4 associated protein 0.345558
RBFOX3 RNA binding protein, fox-1 homolog (C. elegans) 3 0.34334
GAN gigaxonin 0.341495
BEX1 brain expressed, X-linked 1 0.33965
TNF tumor necrosis factor 0.33744
FGF1 fibroblast growth factor 1 (acidic) 0.337072
LDLRAD4 low density lipoprotein receptor class A domain containing 4 0.335968
DARS aspartyl-tRNA synthetase 0.3356
FGF2 fibroblast growth factor 2 (basic) 0.32753
IL1B interleukin 1, beta 0.326432
ZNF79 zinc finger protein 79 0.324239
TREH trehalase (brush-border membrane glycoprotein) 0.32132
MFN2 mitofusin 2 0.320591
APOB apolipoprotein B 0.319134
FCF1 FCF1 rRNA-processing protein 0.318407
FBXL15 F-box and leucine-rich repeat protein 15 0.316224
NT5E 5'-nucleotidase, ecto (CD73) 0.314409
NCAM1 neural cell adhesion molecule 1 0.313683
UGT2A1 UDP glucuronosyltransferase 2 family, polypeptide A1, complex locus 0.312232
HLA-DQA1 major histocompatibility complex, class II, DQ alpha 1 0.311145
HMGN2 high mobility group nucleosomal binding domain 2 0.311145
FGF7 fibroblast growth factor 7 0.310783
TAP1 transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) 0.309335
CLDN1 claudin 1 0.308974
BDNF brain-derived neurotrophic factor 0.307889
CLDN7 claudin 7 0.302838
FLG filaggrin 0.302478
MAP2 microtubule-associated protein 2 0.301758
THEM5 thioesterase superfamily member 5 0.298524
COG2 component of oligomeric golgi complex 2 0.298524
CST7 cystatin F (leukocystatin) 0.298524
GNRH1 gonadotropin-releasing hormone 1 (luteinizing-releasing hormone) 0.298165
GLB1 galactosidase, beta 1 0.293866
TGFB1 transforming growth factor, beta 1 0.293508
GP2 glycoprotein 2 (zymogen granule membrane) 0.291008
THAP1 THAP domain containing, apoptosis associated protein 1 0.289939
RPL32 ribosomal protein L32 0.289939
CST6 cystatin E/M 0.286381
PGF placental growth factor 0.285316
CTSV cathepsin V 0.284962
IL6 interleukin 6 0.284607
REXO2 RNA exonuclease 2 0.282837
CD200 CD200 molecule 0.282483
MGAT4C MGAT4 family, member C 0.28107
BPIFA2 BPI fold containing family A, member 2 0.276145
MATK megakaryocyte-associated tyrosine kinase 0.274045
PGA3 pepsinogen 3, group I (pepsinogen A) 0.274045
PGA4 pepsinogen 4, group I (pepsinogen A) 0.274045
NF1 neurofibromin 1 0.270909
KRT6A keratin 6A, type II 0.269174
LMNB2 lamin B2 0.267446
FGFR1 fibroblast growth factor receptor 1 0.267102
DPP6 dipeptidyl-peptidase 6 0.266757
MVD mevalonate (diphospho) decarboxylase 0.264696
NOTCH1 notch 1 0.261624
APEX1 APEX nuclease (multifunctional DNA repair enzyme) 1 0.258243
SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1 0.257572
GGT1 gamma-glutamyltransferase 1 0.257572
UBIAD1 UbiA prenyltransferase domain containing 1 0.256902
SGK3 serum/glucocorticoid regulated kinase family, member 3 0.256568
SHH sonic hedgehog 0.253578
AR androgen receptor 0.253578
NRTN neurturin 0.253248
SDF4 stromal cell derived factor 4 0.249977
AMY2A amylase, alpha 2A (pancreatic) 0.248683
IGLV3-9 immunoglobulin lambda variable 3-9 (gene/pseudogene) 0.247399
ALPP alkaline phosphatase, placental 0.247079
GSR glutathione reductase 0.244232
CENPF centromere protein F, 350/400kDa 0.244232
CTPS1 CTP synthase 1 0.242983
INSL3 insulin-like 3 (Leydig cell) 0.242672
PLVAP plasmalemma vesicle associated protein 0.242054
LGR5 leucine-rich repeat containing G protein-coupled receptor 5 0.240826
PCNA proliferating cell nuclear antigen 0.23961
VEZF1 vascular endothelial zinc finger 1 0.239007
OR10K1 olfactory receptor, family 10, subfamily K, member 1 0.239007
DPP9 dipeptidyl-peptidase 9 0.239007
MFF mitochondrial fission factor 0.238406
ALOX5 arachidonate 5-lipoxygenase 0.237513
CCND1 cyclin D1 0.236921
RCOR1 REST corepressor 1 0.236921
TECR trans-2,3-enoyl-CoA reductase 0.236627
SYN2 synapsin II 0.235748
OTOF otoferlin 0.235748
WRNIP1 Werner helicase interacting protein 1 0.235167
KIF1B kinesin family member 1B 0.234878
AXIN2 axin 2 0.234494
PTGES3 prostaglandin E synthase 3 (cytosolic) 0.234302
LRIG1 leucine-rich repeats and immunoglobulin-like domains 1 0.234016
GGT2 gamma-glutamyltransferase 2 0.232599
MEA1 male-enhanced antigen 1 0.232317
MMP8 matrix metallopeptidase 8 0.230931
TRIM37 tripartite motif containing 37 0.230656
BSCL2 Berardinelli-Seip congenital lipodystrophy 2 (seipin) 0.230382
PKP1 plakophilin 1 0.23011
ICAM5 intercellular adhesion molecule 5, telencephalin 0.23011
RBBP9 retinoblastoma binding protein 9 0.229568
DES desmin 0.229568
PIR pirin (iron-binding nuclear protein) 0.228234
PPL periplakin 0.226411
DDB2 damage-specific DNA binding protein 2, 48kDa 0.226155
TRPC7 transient receptor potential cation channel, subfamily C, member 7 0.224893
NR2E3 nuclear receptor subfamily 2, group E, member 3 0.222938
DUOXA1 dual oxidase maturation factor 1 0.22246
SMS spermine synthase 0.222224
ADGRL4 adhesion G protein-coupled receptor L4 0.221755
DNM2 dynamin 2 0.221291
COX8A cytochrome c oxidase subunit VIIIA (ubiquitous) 0.221291
PROKR2 prokineticin receptor 2 0.220831
NEFM neurofilament, medium polypeptide 0.220378
NES nestin 0.219707
SLC12A6 solute carrier family 12 (potassium/chloride transporter), member 6 0.219264
SLC22A18 solute carrier family 22, member 18 0.21883
MAP4 microtubule-associated protein 4 0.215147
PSPN persephin 0.214576
DPP8 dipeptidyl-peptidase 8 0.213471
TGFB3 transforming growth factor, beta 3 0.212936
ALPPL2 alkaline phosphatase, placental-like 2 0.212586
BRD4 bromodomain containing 4 0.199348
TARS threonyl-tRNA synthetase 0.198876
EMX1 empty spiracles homeobox 1 0.197616
MT3 metallothionein 3 0.19741
ADH1A alcohol dehydrogenase 1A (class I), alpha polypeptide 0.196927
GLUL glutamate-ammonia ligase 0.19654
FAT1 FAT atypical cadherin 1 0.196102
RASA1 RAS p21 protein activator (GTPase activating protein) 1 0.194629
BCL2L1 BCL2-like 1 0.193993
RPIA ribose 5-phosphate isomerase A 0.19297
AKT1 v-akt murine thymoma viral oncogene homolog 1 0.192337
BIRC2 baculoviral IAP repeat containing 2 0.192087
FRY furry homolog (Drosophila) 0.191636
CSN1S1 casein alpha s1 0.191415
PI3 peptidase inhibitor 3, skin-derived 0.191285
TRPA1 transient receptor potential cation channel, subfamily A, member 1 0.191273
GADD45A growth arrest and DNA-damage-inducible, alpha 0.190746
PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) 0.189467
VCAM1 vascular cell adhesion molecule 1 0.189238
NFE2L2 nuclear factor, erythroid 2-like 2 0.188675
NQO1 NAD(P)H dehydrogenase, quinone 1 0.188492
CYB5A cytochrome b5 type A (microsomal) 0.187986
PARP1 poly (ADP-ribose) polymerase 1 0.187252
GOT1 glutamic-oxaloacetic transaminase 1, soluble 0.183571
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor) 0.182466
H2AFX H2A histone family, member X 0.181643
RETN resistin 0.180881
ICAM1 intercellular adhesion molecule 1 0.180378
XIAP X-linked inhibitor of apoptosis, E3 ubiquitin protein ligase 0.179917
GOT2 glutamic-oxaloacetic transaminase 2, mitochondrial 0.179917