c-Kit-IN-1_NCI-H460 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description c-Kit-IN-1 perturbation in NCI-H460 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the c-Kit-IN-1_NCI-H460 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.119674
ESYT2 extended synaptotagmin-like protein 2 0.113059
TRIO trio Rho guanine nucleotide exchange factor 0.104351
ASPH aspartate beta-hydroxylase 0.0960097
TXNRD1 thioredoxin reductase 1 0.0944811
NAMPT nicotinamide phosphoribosyltransferase 0.0888146
GRAMD1B GRAM domain containing 1B 0.0812592
PDE10A phosphodiesterase 10A 0.0781249
MCL1 myeloid cell leukemia 1 0.0766837
MYOF myoferlin 0.071328
CD109 CD109 molecule 0.0704064
DGKD diacylglycerol kinase, delta 130kDa 0.0696028
LIMCH1 LIM and calponin homology domains 1 0.0653407
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.0649346
EEF2 eukaryotic translation elongation factor 2 0.0633492
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0613043
CXCL8 chemokine (C-X-C motif) ligand 8 0.0601605
SAMD4A sterile alpha motif domain containing 4A 0.0599624
FMNL2 formin-like 2 0.0589545
KMT2C lysine (K)-specific methyltransferase 2C 0.0583879
CTIF CBP80/20-dependent translation initiation factor 0.0582902
EZR ezrin 0.0577021
TBXT T-box transcription factor T 0.055282
EPB41L3 erythrocyte membrane protein band 4.1-like 3 0.054936
KYNU kynureninase 0.0543196
ZEB2 zinc finger E-box binding homeobox 2 0.0540455
FLNB filamin B, beta 0.0536761
TNFAIP3 tumor necrosis factor, alpha-induced protein 3 0.0516881
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 0.0510565
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 0.0502675
GDA guanine deaminase 0.0486526
SPAG9 sperm associated antigen 9 0.0475826
TGFBR1 transforming growth factor, beta receptor 1 0.0446141
RASSF8 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 0.0437235
CREB5 cAMP responsive element binding protein 5 0.0433518
PALLD palladin, cytoskeletal associated protein 0.0425549
CDH11 cadherin 11, type 2, OB-cadherin (osteoblast) 0.0423074
ANTXR1 anthrax toxin receptor 1 0.0420434
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.041419
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.0409234
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 0.0402735
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 0.0399531
SOD2 superoxide dismutase 2, mitochondrial 0.0387422
MSN moesin 0.0386044
SFTPA2 surfactant protein A2 0.0375118
MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase 0.0369503
PTK2 protein tyrosine kinase 2 0.0359596
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0359461
CENPF centromere protein F, 350/400kDa 0.0358799
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0353114
PTEN phosphatase and tensin homolog 0.0352471
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0347045
PCBP2 poly(rC) binding protein 2 0.0345826
CHD1 chromodomain helicase DNA binding protein 1 0.0341599
SH3KBP1 SH3-domain kinase binding protein 1 0.0337702
SLC2A13 solute carrier family 2 (facilitated glucose transporter), member 13 0.0334383
ANXA2 annexin A2 0.0333984
KMT2E lysine (K)-specific methyltransferase 2E 0.0332708
FNDC3B fibronectin type III domain containing 3B 0.0326797
PTPN14 protein tyrosine phosphatase, non-receptor type 14 0.0326747
AGTPBP1 ATP/GTP binding protein 1 0.0324109
CTBP2 C-terminal binding protein 2 0.0323399
COL8A1 collagen, type VIII, alpha 1 0.0317775
ZNF638 zinc finger protein 638 0.0316772
EFNA5 ephrin-A5 0.0314845
NBAS neuroblastoma amplified sequence 0.0314474
USP34 ubiquitin specific peptidase 34 0.031376
NCOR2 nuclear receptor corepressor 2 0.0312689
CUL4A cullin 4A 0.0311096
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0308814
HELZ helicase with zinc finger 0.0305638
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.0305593
CDK6 cyclin-dependent kinase 6 0.0303425
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 0.0302014
PDLIM5 PDZ and LIM domain 5 0.0300884
SFPQ splicing factor proline/glutamine-rich 0.0299348
NDRG1 N-myc downstream regulated 1 0.0296303
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.0287796
RAPH1 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 0.0287034
SPTAN1 spectrin, alpha, non-erythrocytic 1 0.0286848
ANO6 anoctamin 6 0.0284046
ANKRD28 ankyrin repeat domain 28 0.0281413
MATR3 matrin 3 0.0280911
AKAP13 A kinase (PRKA) anchor protein 13 0.0279868
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) 0.027905
B2M beta-2-microglobulin 0.0278716
GALNT2 polypeptide N-acetylgalactosaminyltransferase 2 0.027787
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0277052
NCKAP1 NCK-associated protein 1 0.0275109
MKI67 marker of proliferation Ki-67 0.0274293
UBA6 ubiquitin-like modifier activating enzyme 6 0.0273317
FAM13A family with sequence similarity 13, member A 0.0263612
TOP2A topoisomerase (DNA) II alpha 170kDa 0.0263512
LAMC1 laminin, gamma 1 (formerly LAMB2) 0.0260921
APLP2 amyloid beta (A4) precursor-like protein 2 0.0260098
P3H2 prolyl 3-hydroxylase 2 0.0258129
ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 0.0257329
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa 0.0257168
IL6 interleukin 6 0.0256425
XPO1 exportin 1 0.0255365

decreased expression

Symbol Name Standardized Value
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.380753
PDE4D phosphodiesterase 4D, cAMP-specific -0.147259
FN1 fibronectin 1 -0.139924
PLCB1 phospholipase C, beta 1 (phosphoinositide-specific) -0.100621
PDE3A phosphodiesterase 3A, cGMP-inhibited -0.0996603
ADAMTS6 ADAM metallopeptidase with thrombospondin type 1 motif, 6 -0.0831525
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0774536
RPL26 ribosomal protein L26 -0.0760908
PCBP3 poly(rC) binding protein 3 -0.074338
TPT1 tumor protein, translationally-controlled 1 -0.0733648
VCL vinculin -0.0663234
RPL12 ribosomal protein L12 -0.0560994
RPL31 ribosomal protein L31 -0.0542151
RPS24 ribosomal protein S24 -0.0531567
ACTG1 actin gamma 1 -0.0522349
RPS3 ribosomal protein S3 -0.0521431
RPS27A ribosomal protein S27a -0.0518748
ADGRD1 adhesion G protein-coupled receptor D1 -0.0513309
RPL37A ribosomal protein L37a -0.0508279
CDH13 cadherin 13 -0.0488309
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.0477887
RPS12 ribosomal protein S12 -0.0462016
NALF1 NALCN channel auxiliary factor 1 -0.0459806
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) -0.0442244
FTL ferritin, light polypeptide -0.0440598
RPS6 ribosomal protein S6 -0.0427407
RPL38 ribosomal protein L38 -0.0412266
NCOA7 nuclear receptor coactivator 7 -0.0403885
NCKAP5 NCK-associated protein 5 -0.0402405
PTMA prothymosin, alpha -0.0395582
RPL9 ribosomal protein L9 -0.0377395
RPLP1 ribosomal protein, large, P1 -0.0376508
RACK1 receptor for activated C kinase 1 -0.0368627
RPL11 ribosomal protein L11 -0.0363817
RPL13A ribosomal protein L13a -0.0357902
RPS17 ribosomal protein S17 -0.0354898
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.0354306
DPP10 dipeptidyl-peptidase 10 (non-functional) -0.0352612
RPLP0 ribosomal protein, large, P0 -0.0341639
RPL19 ribosomal protein L19 -0.0335687
RPS23 ribosomal protein S23 -0.0334626
DST dystonin -0.0333322
RPL37 ribosomal protein L37 -0.033284
RPS29 ribosomal protein S29 -0.033118
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.0327804
RPS8 ribosomal protein S8 -0.0322401
RPL35 ribosomal protein L35 -0.0316213
PRELID2 PRELI domain containing 2 -0.0315999
NOP56 NOP56 ribonucleoprotein -0.0314787
RSL1D1 ribosomal L1 domain containing 1 -0.0306663
RPL34 ribosomal protein L34 -0.0306019
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.030126
TENM3 teneurin transmembrane protein 3 -0.0294883
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 -0.0290205
RPL35A ribosomal protein L35a -0.0289233
RPS2 ribosomal protein S2 -0.0285098
DCBLD2 discoidin, CUB and LCCL domain containing 2 -0.0284545
RTN1 reticulon 1 -0.0271392
SLC7A2 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 -0.026814
DNAH14 dynein, axonemal, heavy chain 14 -0.0258068
ESM1 endothelial cell-specific molecule 1 -0.0257712
MAML3 mastermind-like 3 (Drosophila) -0.0254415
RPLP2 ribosomal protein, large, P2 -0.0249451
NRCAM neuronal cell adhesion molecule -0.0248897
RBMS3 RNA binding motif, single stranded interacting protein 3 -0.0248381
RPS25 ribosomal protein S25 -0.0246134
THSD4 thrombospondin, type I, domain containing 4 -0.0242524
CCDC68 coiled-coil domain containing 68 -0.0239852
SOX4 SRY (sex determining region Y)-box 4 -0.0237483
CTNND2 catenin (cadherin-associated protein), delta 2 -0.0233607
RPH3AL rabphilin 3A-like (without C2 domains) -0.0230423
PA2G4 proliferation-associated 2G4, 38kDa -0.0228801
RPL22L1 ribosomal protein L22-like 1 -0.0227019
RPS13 ribosomal protein S13 -0.0225136
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.022155
GLCCI1 glucocorticoid induced 1 -0.0217182
RPS21 ribosomal protein S21 -0.0217107
PRKAA2 protein kinase, AMP-activated, alpha 2 catalytic subunit -0.0216862
RPL23 ribosomal protein L23 -0.0215685
RPS5 ribosomal protein S5 -0.0215544
BZW1 basic leucine zipper and W2 domains 1 -0.0213567
TPM4 tropomyosin 4 -0.0211884
SOX6 SRY (sex determining region Y)-box 6 -0.0210522
DNAH11 dynein, axonemal, heavy chain 11 -0.0210192
RPL27 ribosomal protein L27 -0.0205914
RPL30 ribosomal protein L30 -0.0204678
AEBP2 AE binding protein 2 -0.0201402
ATP5F1B ATP synthase F1 subunit beta -0.0197342
NME2 NME/NM23 nucleoside diphosphate kinase 2 -0.0196291
PCDH9 protocadherin 9 -0.0193345
GABRE gamma-aminobutyric acid (GABA) A receptor, epsilon -0.0192955
INTS6 integrator complex subunit 6 -0.0192142
VDAC1 voltage-dependent anion channel 1 -0.019097
CANX calnexin -0.0190787
SLC16A6 solute carrier family 16, member 6 -0.0186571
SEMA3D sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D -0.0185829
HMGA2 high mobility group AT-hook 2 -0.0184994
RPS14 ribosomal protein S14 -0.0184739
RPS10 ribosomal protein S10 -0.0184606
RPS15 ribosomal protein S15 -0.0183576