callus Gene Set

Dataset TISSUES Text-mining Tissue Protein Expression Evidence Scores
Category structural or functional annotations
Type tissue
Description Undifferentiated tissue that develops on or around an injured or cut plant surface or in tissue culture. (BRENDA Tissue and Enzyme Source Ontology, BTO_0001010)
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Genes

281 proteins co-occuring with the tissue callus in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset.

Symbol Name Standardized Value
GUSB glucuronidase, beta 2.22355
BMP2 bone morphogenetic protein 2 2.13631
IFITM5 interferon induced transmembrane protein 5 1.78942
KIN Kin17 DNA and RNA binding protein 1.78134
LRBA LPS-responsive vesicle trafficking, beach and anchor containing 1.72932
MRS2 MRS2 magnesium transporter 1.63006
BGLAP bone gamma-carboxyglutamate (gla) protein 1.60713
BMP7 bone morphogenetic protein 7 1.57748
CSN1S1 casein alpha s1 1.43292
ALPPL2 alkaline phosphatase, placental-like 2 1.41445
ALPL alkaline phosphatase, liver/bone/kidney 1.41353
ALPP alkaline phosphatase, placental 1.41261
PTH parathyroid hormone 1.32732
MUSTN1 musculoskeletal, embryonic nuclear protein 1 1.31379
DNAJC22 DnaJ (Hsp40) homolog, subfamily C, member 22 1.30973
SAC3D1 SAC3 domain containing 1 1.26486
TMEM38B transmembrane protein 38B 1.24476
RUNX2 runt-related transcription factor 2 1.22781
KRT6A keratin 6A, type II 1.21891
NSL1 NSL1, MIS12 kinetochore complex component 1.18157
IGF1 insulin-like growth factor 1 (somatomedin C) 1.17713
SOST sclerostin 1.1585
MPI mannose phosphate isomerase 1.1452
CALU calumenin 1.12837
TIMM10B translocase of inner mitochondrial membrane 10 homolog B (yeast) 1.12438
MDM1 Mdm1 nuclear protein homolog (mouse) 1.09297
POLR3H polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) 1.08722
ACPP acid phosphatase, prostate 1.07088
SOX9 SRY (sex determining region Y)-box 9 1.07044
COL10A1 collagen, type X, alpha 1 1.06206
AGPS alkylglycerone phosphate synthase 1.03917
TGFB1 transforming growth factor, beta 1 1.03917
PCNA proliferating cell nuclear antigen 1.02732
PRB4 proline-rich protein BstNI subfamily 4 1.02075
LCMT2 leucine carboxyl methyltransferase 2 1.01593
BMP4 bone morphogenetic protein 4 0.998473
MMP13 matrix metallopeptidase 13 0.994119
CAT catalase 0.984991
COL1A2 collagen, type I, alpha 2 0.971552
SPP1 secreted phosphoprotein 1 0.971119
SP7 Sp7 transcription factor 0.963767
WFDC13 WAP four-disulfide core domain 13 0.962903
COL1A1 collagen, type I, alpha 1 0.959449
GSR glutathione reductase 0.912653
SOD2 superoxide dismutase 2, mitochondrial 0.910093
MUC5B mucin 5B, oligomeric mucus/gel-forming 0.903275
CDT1 chromatin licensing and DNA replication factor 1 0.899445
SOX5 SRY (sex determining region Y)-box 5 0.879512
GDF5 growth differentiation factor 5 0.877397
FGF2 fibroblast growth factor 2 (basic) 0.875706
NCR3 natural cytotoxicity triggering receptor 3 0.871061
ACAN aggrecan 0.861363
VEGFA vascular endothelial growth factor A 0.858837
ADH1A alcohol dehydrogenase 1A (class I), alpha polypeptide 0.83993
BMP3 bone morphogenetic protein 3 0.825268
SPINK6 serine peptidase inhibitor, Kazal type 6 0.819412
ODC1 ornithine decarboxylase 1 0.818576
IQUB IQ motif and ubiquitin domain containing 0.801876
F9 coagulation factor IX 0.79146
IDI2 isopentenyl-diphosphate delta isomerase 2 0.779816
MYB v-myb avian myeloblastosis viral oncogene homolog 0.779816
PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) 0.766954
RAB17 RAB17, member RAS oncogene family 0.761984
BAIAP2 BAI1-associated protein 2 0.758259
TECR trans-2,3-enoyl-CoA reductase 0.755777
BMP6 bone morphogenetic protein 6 0.754537
KRT6B keratin 6B, type II 0.751231
CYR61 cysteine-rich, angiogenic inducer, 61 0.746277
ADGRL4 adhesion G protein-coupled receptor L4 0.745451
IDI1 isopentenyl-diphosphate delta isomerase 1 0.733912
SRM spermidine synthase 0.724041
PRODH proline dehydrogenase (oxidase) 1 0.717061
NOG noggin 0.711319
MATK megakaryocyte-associated tyrosine kinase 0.694128
SPINK9 serine peptidase inhibitor, Kazal type 9 0.674135
DKK1 dickkopf WNT signaling pathway inhibitor 1 0.671692
MGAM maltase-glucoamylase 0.663555
PGM2 phosphoglucomutase 2 0.663149
CTU1 cytosolic thiouridylase subunit 1 0.663149
KRT9 keratin 9, type I 0.65746
COL2A1 collagen, type II, alpha 1 0.644479
PTGDR prostaglandin D2 receptor (DP) 0.644074
RCC2 regulator of chromosome condensation 2 0.633144
GDF6 growth differentiation factor 6 0.63274
RPL13 ribosomal protein L13 0.615377
NOC2L nucleolar complex associated 2 homolog (S. cerevisiae) 0.612555
BAMBI BMP and activin membrane-bound inhibitor 0.609735
CALCA calcitonin-related polypeptide alpha 0.600479
CXCL12 chemokine (C-X-C motif) ligand 12 0.600077
GLB1 galactosidase, beta 1 0.598067
KREMEN2 kringle containing transmembrane protein 2 0.593649
IDH2 isocitrate dehydrogenase 2 (NADP+), mitochondrial 0.592845
KRT72 keratin 72, type II 0.586828
SLC7A4 solute carrier family 7, member 4 0.580417
SPARC secreted protein, acidic, cysteine-rich (osteonectin) 0.580017
LOX lysyl oxidase 0.57042
SOX6 SRY (sex determining region Y)-box 6 0.565232
DECR1 2,4-dienoyl CoA reductase 1, mitochondrial 0.564833
IHH indian hedgehog 0.564035
GDF7 growth differentiation factor 7 0.564035
APEH acylaminoacyl-peptide hydrolase 0.558059
TNFRSF11B tumor necrosis factor receptor superfamily, member 11b 0.550901
SUCLA2 succinate-CoA ligase, ADP-forming, beta subunit 0.539793
TERF1 telomeric repeat binding factor (NIMA-interacting) 1 0.527139
GLDC glycine dehydrogenase (decarboxylating) 0.525166
PCK2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) 0.524377
PGD phosphogluconate dehydrogenase 0.520435
DHX9 DEAH (Asp-Glu-Ala-His) box helicase 9 0.517284
LRP5 low density lipoprotein receptor-related protein 5 0.516104
PCK1 phosphoenolpyruvate carboxykinase 1 (soluble) 0.511384
NTPCR nucleoside-triphosphatase, cancer-related 0.510599
THBS2 thrombospondin 2 0.509027
AIF1 allograft inflammatory factor 1 0.50275
PTHLH parathyroid hormone-like hormone 0.502357
FDFT1 farnesyl-diphosphate farnesyltransferase 1 0.49844
MAP2K4 mitogen-activated protein kinase kinase 4 0.496092
T T, brachyury homolog (mouse) 0.486326
CDH15 cadherin 15, type 1, M-cadherin (myotubule) 0.484766
PHLPP1 PH domain and leucine rich repeat protein phosphatase 1 0.483986
TGM1 transglutaminase 1 0.48087
CASD1 CAS1 domain containing 1 0.478534
SRRM2 serine/arginine repetitive matrix 2 0.475812
PRB2 proline-rich protein BstNI subfamily 2 0.475034
PAPSS1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 0.472315
RNF123 ring finger protein 123 0.468436
ARAF A-Raf proto-oncogene, serine/threonine kinase 0.465335
GABARAPL2 GABA(A) receptor-associated protein-like 2 0.459918
IBSP integrin-binding sialoprotein 0.456055
DHX15 DEAH (Asp-Glu-Ala-His) box helicase 15 0.454126
MIPEP mitochondrial intermediate peptidase 0.452584
ELAC2 elaC ribonuclease Z 2 0.451813
SQLE squalene epoxidase 0.446038
GLUL glutamate-ammonia ligase 0.443731
DSC2 desmocollin 2 0.440658
MXD1 MAX dimerization protein 1 0.440658
DNAH8 dynein, axonemal, heavy chain 8 0.439507
SERPINB6 serpin peptidase inhibitor, clade B (ovalbumin), member 6 0.435289
MSTN myostatin 0.435289
CTSK cathepsin K 0.432225
GLO1 glyoxalase I 0.428401
PFDN4 prefoldin subunit 4 0.42649
CRTAP cartilage associated protein 0.426109
BMP5 bone morphogenetic protein 5 0.421529
MDH2 malate dehydrogenase 2, NAD (mitochondrial) 0.421529
GPNMB glycoprotein (transmembrane) nmb 0.420004
FGF1 fibroblast growth factor 1 (acidic) 0.419623
DYNC2H1 dynein, cytoplasmic 2, heavy chain 1 0.419242
DTL denticleless E3 ubiquitin protein ligase homolog (Drosophila) 0.419242
NETO2 neuropilin (NRP) and tolloid (TLL)-like 2 0.417718
ABI3 ABI family, member 3 0.416957
RNASEH2A ribonuclease H2, subunit A 0.406694
RNMT RNA (guanine-7-) methyltransferase 0.401007
MDH1 malate dehydrogenase 1, NAD (soluble) 0.40025
SNRK SNF related kinase 0.399492
GPANK1 G patch domain and ankyrin repeats 1 0.396844
UBN1 ubinuclein 1 0.391553
ADH4 alcohol dehydrogenase 4 (class II), pi polypeptide 0.388158
MAPK6 mitogen-activated protein kinase 6 0.38552
MNX1 motor neuron and pancreas homeobox 1 0.385143
ALDH4A1 aldehyde dehydrogenase 4 family, member A1 0.381755
MMP9 matrix metallopeptidase 9 0.37687
FOXL2 forkhead box L2 0.37687
RNF2 ring finger protein 2 0.371994
LRRC38 leucine rich repeat containing 38 0.368624
RBSN rabenosyn, RAB effector 0.366381
SMAD6 SMAD family member 6 0.362646
MON1A MON1 secretory trafficking family member A 0.358919
G6PD glucose-6-phosphate dehydrogenase 0.356314
CHEK2 checkpoint kinase 2 0.356314
MT4 metallothionein 4 0.353712
KLK8 kallikrein-related peptidase 8 0.351485
SOCS2 suppressor of cytokine signaling 2 0.34926
GALR1 galanin receptor 1 0.347038
TIPARP TCDD-inducible poly(ADP-ribose) polymerase 0.338177
HIST2H3PS2 histone cluster 2, H3, pseudogene 2 0.33744
RNF25 ring finger protein 25 0.335233
PPA1 pyrophosphatase (inorganic) 1 0.33413
GLI1 GLI family zinc finger 1 0.333396
H3F3A H3 histone, family 3A 0.333028
H3F3B H3 histone, family 3B (H3.3B) 0.333028
ADH1B alcohol dehydrogenase 1B (class I), beta polypeptide 0.33046
ADH6 alcohol dehydrogenase 6 (class V) 0.33046
OTC ornithine carbamoyltransferase 0.329727
BRD7 bromodomain containing 7 0.328262
INS insulin 0.323509
BIN2 bridging integrator 2 0.323509
NGF nerve growth factor (beta polypeptide) 0.318042
P3H1 prolyl 3-hydroxylase 1 0.317679
TSPO translocator protein (18kDa) 0.317679
MGAT1 mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase 0.314046
AMD1 adenosylmethionine decarboxylase 1 0.31187
HSPA1L heat shock 70kDa protein 1-like 0.310059
ALOX5 arachidonate 5-lipoxygenase 0.308974
GC group-specific component (vitamin D binding protein) 0.308974
ASL argininosuccinate lyase 0.308251
KRT16 keratin 16, type I 0.307528
UGP2 UDP-glucose pyrophosphorylase 2 0.307167
TRIM37 tripartite motif containing 37 0.306083
PTGER4 prostaglandin E receptor 4 (subtype EP4) 0.302838
AHCYL1 adenosylhomocysteinase-like 1 0.298165
PTN pleiotrophin 0.294581
STAG2 stromal antigen 2 0.294223
BBS9 Bardet-Biedl syndrome 9 0.293866
HIST1H2AD histone cluster 1, H2ad 0.291365
MLH3 mutL homolog 3 0.291365
HIST1H2AJ histone cluster 1, H2aj 0.291365
HIST1H2AH histone cluster 1, H2ah 0.290652
ILVBL ilvB (bacterial acetolactate synthase)-like 0.290295
FOXD3 forkhead box D3 0.289939
H2AFJ H2A histone family, member J 0.289939
CTSH cathepsin H 0.288158
H2AFY2 H2A histone family, member Y2 0.287803
SRR serine racemase 0.287447
HIST1H2AM histone cluster 1, H2am 0.286381
H2AFB1 H2A histone family, member B1 0.286026
H2AFV H2A histone family, member V 0.285671
FST follistatin 0.285671
H2AFB2 H2A histone family, member B2 0.285671
HIST1H2AG histone cluster 1, H2ag 0.284607
COL9A1 collagen, type IX, alpha 1 0.282483
ADAMTS3 ADAM metallopeptidase with thrombospondin type 1 motif, 3 0.280364
GREM2 gremlin 2, DAN family BMP antagonist 0.280364
KIRREL2 kin of IRRE like 2 (Drosophila) 0.279659
HIST1H2AE histone cluster 1, H2ae 0.279307
HIST1H2AB histone cluster 1, H2ab 0.279307
KLK7 kallikrein-related peptidase 7 0.2779
SKAP2 src kinase associated phosphoprotein 2 0.277549
NYX nyctalopin 0.273696
MAFF v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog F 0.273696
LRP4 low density lipoprotein receptor-related protein 4 0.271604
CREB3L1 cAMP responsive element binding protein 3-like 1 0.267791
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) 0.267791
CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 0.266413
LDLRAD4 low density lipoprotein receptor class A domain containing 4 0.265725
DNA2 DNA replication helicase/nuclease 2 0.261964
H2AFY H2A histone family, member Y 0.261624
KLK14 kallikrein-related peptidase 14 0.253248
SERPINH1 serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1) 0.25259
CXCR4 chemokine (C-X-C motif) receptor 4 0.251606
EFEMP2 EGF containing fibulin-like extracellular matrix protein 2 0.251606
NOTCH1 notch 1 0.24804
C1R complement component 1, r subcomponent 0.247719
MAGEE1 melanoma antigen family E1 0.24676
SRPX2 sushi-repeat containing protein, X-linked 2 0.246124
FAM120A family with sequence similarity 120A 0.245807
SERPINA4 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 4 0.245807
SRL sarcalumenin 0.245491
ALB albumin 0.245491
KRT84 keratin 84, type II 0.244232
AMIGO2 adhesion molecule with Ig-like domain 2 0.242672
MARS methionyl-tRNA synthetase 0.241132
TAC1 tachykinin, precursor 1 0.241132
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.241132
ISYNA1 inositol-3-phosphate synthase 1 0.24052
RICTOR RPTOR independent companion of MTOR, complex 2 0.239307
SULT1E1 sulfotransferase family 1E, estrogen-preferring, member 1 0.239307
ELOVL5 ELOVL fatty acid elongase 5 0.239307
COL11A2 collagen, type XI, alpha 2 0.238706
GPI glucose-6-phosphate isomerase 0.238706
CDH11 cadherin 11, type 2, OB-cadherin (osteoblast) 0.23781
CHRD chordin 0.233731
FGFR3 fibroblast growth factor receptor 3 0.231482
DSC1 desmocollin 1 0.231206
LPCAT3 lysophosphatidylcholine acyltransferase 3 0.228764
FLG filaggrin 0.227445
ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif, 4 0.2259
DCXR dicarbonyl/L-xylulose reductase 0.224893
PTGER2 prostaglandin E receptor 2 (subtype EP2), 53kDa 0.223906
FDPS farnesyl diphosphate synthase 0.22246
ALDH18A1 aldehyde dehydrogenase 18 family, member A1 0.221989
PLCB4 phospholipase C, beta 4 0.221291
MINK1 misshapen-like kinase 1 0.220378
HMBS hydroxymethylbilane synthase 0.217346
NELL1 NEL-like 1 (chicken) 0.216933
CCDC130 coiled-coil domain containing 130 0.216126
CTPS1 CTP synthase 1 0.215341
FKBP10 FK506 binding protein 10, 65 kDa 0.215341
TUBA1A tubulin, alpha 1a 0.21365
SMPD3 sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II) 0.213112
COL11A2P1 collagen, type XI, alpha 2 pseudogene 1 0.212936
FGFR1 fibroblast growth factor receptor 1 0.212413