chromatin remodeling Gene Set

Dataset GO Biological Process Annotations 2025
Category structural or functional annotations
Type biological process
Description Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation. (Gene Ontology, GO_0006338)
External Link http://amigo.geneontology.org/amigo/term/GO:0006338
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Genes

263 genes participating in the chromatin remodeling biological process from the curated GO Biological Process Annotations 2025 dataset.

Symbol Name
ACTL6A actin-like 6A
ACTL6B actin-like 6B
ACTR5 ARP5 actin-related protein 5 homolog (yeast)
ACTR6 ARP6 actin-related protein 6 homolog (yeast)
ACTR8 ARP8 actin-related protein 8 homolog (yeast)
APLF aprataxin and PNKP like factor
ARID1A AT rich interactive domain 1A (SWI-like)
ARID1B AT rich interactive domain 1B (SWI1-like)
ARID2 AT rich interactive domain 2 (ARID, RFX-like)
ARTN artemin
ASF1A anti-silencing function 1A histone chaperone
ATRX alpha thalassemia/mental retardation syndrome X-linked
BABAM1 BRISC and BRCA1 A complex member 1
BARD1 BRCA1 associated RING domain 1
BAZ1A bromodomain adjacent to zinc finger domain, 1A
BAZ1B bromodomain adjacent to zinc finger domain, 1B
BAZ2A bromodomain adjacent to zinc finger domain, 2A
BAZ2B bromodomain adjacent to zinc finger domain, 2B
BCL7A B-cell CLL/lymphoma 7A
BCL7B B-cell CLL/lymphoma 7B
BCL7C B-cell CLL/lymphoma 7C
BCOR BCL6 corepressor
BICRA BRD4 interacting chromatin remodeling complex associated protein
BICRAL BICRA like chromatin remodeling complex associated protein
BPTF bromodomain PHD finger transcription factor
BRCA1 breast cancer 1, early onset
BRCC3 BRCA1/BRCA2-containing complex, subunit 3
BRD1 bromodomain containing 1
BRD2 bromodomain containing 2
BRD3 bromodomain containing 3
BRD4 bromodomain containing 4
BRD7 bromodomain containing 7
BRD9 bromodomain containing 9
BRDT bromodomain, testis-specific
C6ORF89 chromosome 6 open reading frame 89
CARM1 coactivator-associated arginine methyltransferase 1
CBX3 chromobox homolog 3
CDK9 cyclin-dependent kinase 9
CECR2 cat eye syndrome chromosome region, candidate 2
CFDP1 craniofacial development protein 1
CGGBP1 CGG triplet repeat binding protein 1
CHD1 chromodomain helicase DNA binding protein 1
CHD1L chromodomain helicase DNA binding protein 1-like
CHD3 chromodomain helicase DNA binding protein 3
CHD4 chromodomain helicase DNA binding protein 4
CHD6 chromodomain helicase DNA binding protein 6
CHD7 chromodomain helicase DNA binding protein 7
CHD8 chromodomain helicase DNA binding protein 8
CHEK1 checkpoint kinase 1
CHRAC1 chromatin accessibility complex 1
CHTOP chromatin target of PRMT1
COMMD3-BMI1 COMMD3-BMI1 readthrough
COPRS coordinator of PRMT5, differentiation stimulator
CTCF CCCTC-binding factor (zinc finger protein)
DAXX death-domain associated protein
DDX23 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
DDX56 DEAD (Asp-Glu-Ala-Asp) box helicase 56
DEK DEK proto-oncogene
DMAP1 DNA methyltransferase 1 associated protein 1
DPEP2 dipeptidase 2
DPEP3 dipeptidase 3
DPF1 D4, zinc and double PHD fingers family 1
DPF2 D4, zinc and double PHD fingers family 2
DPF3 D4, zinc and double PHD fingers, family 3
DSCAM Down syndrome cell adhesion molecule
DTX3L deltex 3 like, E3 ubiquitin ligase
EHMT1 euchromatic histone-lysine N-methyltransferase 1
EHMT2 euchromatic histone-lysine N-methyltransferase 2
ERCC6 excision repair cross-complementation group 6
ESR1 estrogen receptor 1
EZH1 enhancer of zeste 1 polycomb repressive complex 2 subunit
EZHIP EZH inhibitory protein
FBXL19 F-box and leucine-rich repeat protein 19
FOXA1 forkhead box A1
FOXP3 forkhead box P3
GATAD1 GATA zinc finger domain containing 1
GATAD2A GATA zinc finger domain containing 2A
GATAD2B GATA zinc finger domain containing 2B
GLMN glomulin, FKBP associated protein
GLYR1 glyoxylate reductase 1 homolog (Arabidopsis)
GPX1 glutathione peroxidase 1
H1-8 H1.8 linker histone
H3C7 H3 clustered histone 7
HCFC1 host cell factor C1
HCFC2 host cell factor C2
HDAC1 histone deacetylase 1
HDAC10 histone deacetylase 10
HDAC11 histone deacetylase 11
HDAC2 histone deacetylase 2
HDAC3 histone deacetylase 3
HDAC4 histone deacetylase 4
HDAC5 histone deacetylase 5
HDAC6 histone deacetylase 6
HDAC7 histone deacetylase 7
HDAC9 histone deacetylase 9
HDGF hepatoma-derived growth factor
HDGFL1 hepatoma derived growth factor-like 1
HDGFL2 HDGF like 2
HIPK2 homeodomain interacting protein kinase 2
HIRA histone cell cycle regulator
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2)
INO80 INO80 complex subunit
INO80B INO80 complex subunit B
INO80C INO80 complex subunit C
INO80D INO80 complex subunit D
INO80E INO80 complex subunit E
IWS1 IWS1 homolog (S. cerevisiae)
JARID2 jumonji, AT rich interactive domain 2
JMJD6 jumonji domain containing 6
KAT2A K(lysine) acetyltransferase 2A
KAT2B K(lysine) acetyltransferase 2B
KAT5 K(lysine) acetyltransferase 5
KDM1A lysine (K)-specific demethylase 1A
KDM2A lysine (K)-specific demethylase 2A
KDM2B lysine (K)-specific demethylase 2B
KDM4A lysine (K)-specific demethylase 4A
KDM4B lysine (K)-specific demethylase 4B
KDM4C lysine (K)-specific demethylase 4C
KDM4D lysine (K)-specific demethylase 4D
KDM4E lysine (K)-specific demethylase 4E
KDM4F lysine demethylase 4F
KDM5A lysine (K)-specific demethylase 5A
KDM5B lysine (K)-specific demethylase 5B
KDM5C lysine (K)-specific demethylase 5C
KDM5D lysine (K)-specific demethylase 5D
KDM6A lysine (K)-specific demethylase 6A
KDM6B lysine (K)-specific demethylase 6B
KDM7A lysine (K)-specific demethylase 7A
KMT2E lysine (K)-specific methyltransferase 2E
LIN54 lin-54 DREAM MuvB core complex component
MACROH2A1 macroH2A.1 histone
MCM3AP minichromosome maintenance complex component 3 associated protein
MCRS1 microspherule protein 1
METTL23 methyltransferase like 23
MIER1 mesoderm induction early response 1, transcriptional regulator
MORC2 MORC family CW-type zinc finger 2
MRE11 MRE11 homolog, double strand break repair nuclease
MSL2 male-specific lethal 2 homolog (Drosophila)
MTA1 metastasis associated 1
MTA2 metastasis associated 1 family, member 2
MTA3 metastasis associated 1 family, member 3
MTF2 metal response element binding transcription factor 2
MYBBP1A MYB binding protein (P160) 1a
MYC v-myc avian myelocytomatosis viral oncogene homolog
MYO1E myosin IE
MYSM1 Myb-like, SWIRM and MPN domains 1
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive
NFRKB nuclear factor related to kappaB binding protein
NIPBL Nipped-B homolog (Drosophila)
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin)
NPM2 nucleophosmin/nucleoplasmin 2
NPM3 nucleophosmin/nucleoplasmin 3
NR5A2 nuclear receptor subfamily 5, group A, member 2
NUDT5 nudix (nucleoside diphosphate linked moiety X)-type motif 5
PADI2 peptidyl arginine deiminase, type II
PADI4 peptidyl arginine deiminase, type IV
PARP2 poly (ADP-ribose) polymerase 2
PAXIP1 PAX interacting (with transcription-activation domain) protein 1
PBRM1 polybromo 1
PCGF1 polycomb group ring finger 1
PCGF2 polycomb group ring finger 2
PCGF6 polycomb group ring finger 6
PER1 period circadian clock 1
PER2 period circadian clock 2
PHB1 prohibitin 1
PHC1 polyhomeotic homolog 1 (Drosophila)
PHF1 PHD finger protein 1
PHF10 PHD finger protein 10
PHF2 PHD finger protein 2
PHF8 PHD finger protein 8
PIH1D1 PIH1 domain containing 1
PKN1 protein kinase N1
PML promyelocytic leukemia
POLE3 polymerase (DNA directed), epsilon 3, accessory subunit
POTEF POTE ankyrin domain family, member F
PRIMPOL primase and polymerase (DNA-directed)
PRMT1 protein arginine methyltransferase 1
PRMT2 protein arginine methyltransferase 2
PRMT3 protein arginine methyltransferase 3
PRMT5 protein arginine methyltransferase 5
PRMT6 protein arginine methyltransferase 6
PRMT7 protein arginine methyltransferase 7
PRMT8 protein arginine methyltransferase 8
PRMT9 protein arginine methyltransferase 9
PSIP1 PC4 and SFRS1 interacting protein 1
PWWP2A PWWP domain containing 2A
PWWP2B PWWP domain containing 2B
RAD50 RAD50 homolog (S. cerevisiae)
RB1 retinoblastoma 1
RBBP4 retinoblastoma binding protein 4
RBBP7 retinoblastoma binding protein 7
REST RE1-silencing transcription factor
RING1 ring finger protein 1
RNF168 ring finger protein 168, E3 ubiquitin protein ligase
RNF2 ring finger protein 2
RNF8 ring finger protein 8, E3 ubiquitin protein ligase
RSF1 remodeling and spacing factor 1
RUVBL1 RuvB-like AAA ATPase 1
RUVBL2 RuvB-like AAA ATPase 2
RYBP RING1 and YY1 binding protein
SART3 squamous cell carcinoma antigen recognized by T cells 3
SATB1 SATB homeobox 1
SATB2 SATB homeobox 2
SETD2 SET domain containing 2
SETD4 SET domain containing 4
SF3B1 splicing factor 3b, subunit 1, 155kDa
SFPQ splicing factor proline/glutamine-rich
SIRT1 sirtuin 1
SIRT2 sirtuin 2
SIRT6 sirtuin 6
SIRT7 sirtuin 7
SKP1 S-phase kinase-associated protein 1
SLFN11 schlafen family member 11
SMARCA1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
SMARCA2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
SMARCAD1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
SMARCC2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
SMARCD2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
SMARCD3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
SOX9 SRY (sex determining region Y)-box 9
SRCAP Snf2-related CREBBP activator protein
SRPK2 SRSF protein kinase 2
SS18 synovial sarcoma translocation, chromosome 18
SUDS3 suppressor of defective silencing 3 homolog (S. cerevisiae)
SUPT6H suppressor of Ty 6 homolog (S. cerevisiae)
SUV39H2 suppressor of variegation 3-9 homolog 2 (Drosophila)
TADA2A transcriptional adaptor 2A
TADA2B transcriptional adaptor 2B
TAF6L TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa
TDG thymine-DNA glycosylase
TET1 tet methylcytosine dioxygenase 1
TFPT TCF3 (E2A) fusion partner (in childhood Leukemia)
TNP1 transition protein 1 (during histone to protamine replacement)
TOP1 topoisomerase (DNA) I
TRIP12 thyroid hormone receptor interactor 12
TRRAP transformation/transcription domain-associated protein
UBE2A ubiquitin-conjugating enzyme E2A
UBR5 ubiquitin protein ligase E3 component n-recognin 5
UCHL5 ubiquitin carboxyl-terminal hydrolase L5
UHRF1 ubiquitin-like with PHD and ring finger domains 1
UIMC1 ubiquitin interaction motif containing 1
USP15 ubiquitin specific peptidase 15
USP3 ubiquitin specific peptidase 3
USP51 ubiquitin specific peptidase 51
VPS72 vacuolar protein sorting 72 homolog (S. cerevisiae)
VRK1 vaccinia related kinase 1
WAC WW domain containing adaptor with coiled-coil
YEATS2 YEATS domain containing 2
YEATS4 YEATS domain containing 4
YY1 YY1 transcription factor
ZBTB1 zinc finger and BTB domain containing 1
ZBTB7A zinc finger and BTB domain containing 7A
ZNF274 zinc finger protein 274
ZNF335 zinc finger protein 335
ZNF827 zinc finger protein 827
ZNF83 zinc finger protein 83
ZNHIT1 zinc finger, HIT-type containing 1