ciliary basal body Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A membrane-tethered, short cylindrical array of microtubules and associated proteins found at the base of a eukaryotic cilium (also called flagellum) that is similar in structure to a centriole and derives from it. The cilium basal body is the site of assembly and remodelling of the cilium and serves as a nucleation site for axoneme growth. As well as anchoring the cilium, it is thought to provide a selective gateway regulating the entry of ciliary proteins and vesicles by intraflagellar transport. (Gene Ontology, GO_0036064)
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50 proteins co-occuring with the ciliary basal body cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
RPGRIP1L RPGRIP1-like 1.21273
FAM161B family with sequence similarity 161, member B 1.19726
SCLT1 sodium channel and clathrin linker 1 1.13983
MORN1 MORN repeat containing 1 1.13574
CEP83 centrosomal protein 83kDa 1.11072
C2CD3 C2 calcium-dependent domain containing 3 1.09951
OFD1 oral-facial-digital syndrome 1 1.0934
JADE1 jade family PHD finger 1 1.07765
FAM161A family with sequence similarity 161, member A 1.0741
SDCCAG8 serologically defined colon cancer antigen 8 1.03479
LCA5 Leber congenital amaurosis 5 1.00448
FBF1 Fas (TNFRSF6) binding factor 1 0.97953
TTBK2 tau tubulin kinase 2 0.927013
ALMS1 Alstrom syndrome protein 1 0.916243
KATNA1 katanin p60 (ATPase containing) subunit A 1 0.866746
RAB23 RAB23, member RAS oncogene family 0.818075
NEK1 NIMA-related kinase 1 0.808441
IFT52 intraflagellar transport 52 0.806606
CEP164 centrosomal protein 164kDa 0.801104
WRNIP1 Werner helicase interacting protein 1 0.736014
ARL13B ADP-ribosylation factor-like 13B 0.73018
ODF2 outer dense fiber of sperm tails 2 0.727494
ARF4 ADP-ribosylation factor 4 0.699983
HSPA9 heat shock 70kDa protein 9 (mortalin) 0.692955
FLII flightless I homolog (Drosophila) 0.692078
KIF17 kinesin family member 17 0.647433
FTO fat mass and obesity associated 0.631598
FLAD1 flavin adenine dinucleotide synthetase 1 0.607818
CEP290 centrosomal protein 290kDa 0.579251
RAB10 RAB10, member RAS oncogene family 0.566338
IFT88 intraflagellar transport 88 0.555559
KLK7 kallikrein-related peptidase 7 0.54194
GLI3 GLI family zinc finger 3 0.520615
SHH sonic hedgehog 0.492561
SEPT7 septin 7 0.466399
RAB11A RAB11A, member RAS oncogene family 0.445275
CPE carboxypeptidase E 0.413382
DNAH8 dynein, axonemal, heavy chain 8 0.388137
PKD2 polycystic kidney disease 2 (autosomal dominant) 0.373516
STK11 serine/threonine kinase 11 0.365859
RAB8A RAB8A, member RAS oncogene family 0.362804
CALM3 calmodulin 3 (phosphorylase kinase, delta) 0.341907
CALM1 calmodulin 1 (phosphorylase kinase, delta) 0.341529
CALM2 calmodulin 2 (phosphorylase kinase, delta) 0.341529
PCNT pericentrin 0.338506
CASP2 caspase 2, apoptosis-related cysteine peptidase 0.318953
CETN3 centrin, EF-hand protein, 3 0.286245
TSPO translocator protein (18kDa) 0.254017
ARPP21 cAMP-regulated phosphoprotein, 21kDa 0.206082
CA2 carbonic anhydrase II 0.1632