coli Gene Set

Dataset GeneRIF Biological Term Annotations
Category structural or functional annotations
Type biological term
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Genes

334 genes co-occuring with the biological term coli in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.

Symbol Name
ABCB1 ATP-binding cassette, sub-family B (MDR/TAP), member 1
ACTN2 actinin, alpha 2
ADAR adenosine deaminase, RNA-specific
ADD1 adducin 1 (alpha)
ADM adrenomedullin
AFP alpha-fetoprotein
AGER advanced glycosylation end product-specific receptor
AHI1 Abelson helper integration site 1
AICDA activation-induced cytidine deaminase
AK4 adenylate kinase 4
AKT1 v-akt murine thymoma viral oncogene homolog 1
ANTXR2 anthrax toxin receptor 2
ANXA2 annexin A2
AOX1 aldehyde oxidase 1
APC adenomatous polyposis coli
APC2 adenomatosis polyposis coli 2
APEX1 APEX nuclease (multifunctional DNA repair enzyme) 1
APEX2 APEX nuclease (apurinic/apyrimidinic endonuclease) 2
APIP APAF1 interacting protein
APP amyloid beta (A4) precursor protein
AS3MT arsenite methyltransferase
ATP5B ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
ATP7B ATPase, Cu++ transporting, beta polypeptide
AXIN1 axin 1
AZU1 azurocidin 1
BAIAP2 BAI1-associated protein 2
BAK1 BCL2-antagonist/killer 1
BAX BCL2-associated X protein
BCL2L1 BCL2-like 1
BCO2 beta-carotene oxygenase 2
BMP7 bone morphogenetic protein 7
BMPR1A bone morphogenetic protein receptor, type IA
BMPR2 bone morphogenetic protein receptor, type II (serine/threonine kinase)
BSPH1 binder of sperm protein homolog 1
BTRC beta-transducin repeat containing E3 ubiquitin protein ligase
C3 complement component 3
C4A complement component 4A (Rodgers blood group)
CALCA calcitonin-related polypeptide alpha
CAMP cathelicidin antimicrobial peptide
CASP3 caspase 3, apoptosis-related cysteine peptidase
CASP7 caspase 7, apoptosis-related cysteine peptidase
CASP8 caspase 8, apoptosis-related cysteine peptidase
CASP9 caspase 9, apoptosis-related cysteine peptidase
CAV1 caveolin 1, caveolae protein, 22kDa
CBS cystathionine-beta-synthase
CCL1 chemokine (C-C motif) ligand 1
CCL11 chemokine (C-C motif) ligand 11
CCL13 chemokine (C-C motif) ligand 13
CCL17 chemokine (C-C motif) ligand 17
CCL18 chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated)
CCL19 chemokine (C-C motif) ligand 19
CCL2 chemokine (C-C motif) ligand 2
CCL20 chemokine (C-C motif) ligand 20
CCL21 chemokine (C-C motif) ligand 21
CCL22 chemokine (C-C motif) ligand 22
CCL25 chemokine (C-C motif) ligand 25
CCL8 chemokine (C-C motif) ligand 8
CCND1 cyclin D1
CD14 CD14 molecule
CD276 CD276 molecule
CD2AP CD2-associated protein
CD46 CD46 molecule, complement regulatory protein
CD47 CD47 molecule
CD48 CD48 molecule
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group)
CDA cytidine deaminase
CDC42 cell division cycle 42
CDH1 cadherin 1, type 1, E-cadherin (epithelial)
CEACAM6 carcinoembryonic antigen-related cell adhesion molecule 6 (non-specific cross reacting antigen)
CFH complement factor H
CFI complement factor I
CFP complement factor properdin
CFTR cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)
CHRNA7 cholinergic receptor, nicotinic, alpha 7 (neuronal)
CNOT7 CCR4-NOT transcription complex, subunit 7
COL1A1 collagen, type I, alpha 1
COMT catechol-O-methyltransferase
CPA3 carboxypeptidase A3 (mast cell)
CPB2 carboxypeptidase B2 (plasma)
CPS1 carbamoyl-phosphate synthase 1, mitochondrial
CSNK2A2 casein kinase 2, alpha prime polypeptide
CSNK2B casein kinase 2, beta polypeptide
CST11 cystatin 11
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa
CTNNBIP1 catenin, beta interacting protein 1
CXCL1 chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha)
CXCL10 chemokine (C-X-C motif) ligand 10
CXCL11 chemokine (C-X-C motif) ligand 11
CXCL12 chemokine (C-X-C motif) ligand 12
CXCL13 chemokine (C-X-C motif) ligand 13
CXCL14 chemokine (C-X-C motif) ligand 14
CXCL2 chemokine (C-X-C motif) ligand 2
CXCL3 chemokine (C-X-C motif) ligand 3
CXCL8 chemokine (C-X-C motif) ligand 8
CYP19A1 cytochrome P450, family 19, subfamily A, polypeptide 1
CYP2C19 cytochrome P450, family 2, subfamily C, polypeptide 19
CYP3A4 cytochrome P450, family 3, subfamily A, polypeptide 4
DARS2 aspartyl-tRNA synthetase 2, mitochondrial
DDX58 DEAD (Asp-Glu-Ala-Asp) box polypeptide 58
DEFA1 defensin, alpha 1
DEFA1B defensin, alpha 1B
DEFA3 defensin, alpha 3, neutrophil-specific
DEFA4 defensin, alpha 4, corticostatin
DEFA5 defensin, alpha 5, Paneth cell-specific
DEFB1 defensin, beta 1
DEFB103A defensin, beta 103A
DEFB104A defensin, beta 104A
DEFB104B defensin, beta 104B
DEFB105A defensin, beta 105A
DEFB105B defensin, beta 105B
DEFB106A defensin, beta 106A
DEFB106B defensin, beta 106B
DEFB114 defensin, beta 114
DEFB126 defensin, beta 126
DEFB132 defensin, beta 132
DEFB4A defensin, beta 4A
DHFR dihydrofolate reductase
DMBT1 deleted in malignant brain tumors 1
DMC1 DNA meiotic recombinase 1
DNAJA3 DnaJ (Hsp40) homolog, subfamily A, member 3
DOCK4 dedicator of cytokinesis 4
DUT deoxyuridine triphosphatase
EGFR epidermal growth factor receptor
EGLN2 egl-9 family hypoxia-inducible factor 2
ELAVL1 ELAV like RNA binding protein 1
EP300 E1A binding protein p300
EPB41 erythrocyte membrane protein band 4.1
EPO erythropoietin
EPPIN epididymal peptidase inhibitor
ERBB2 erb-b2 receptor tyrosine kinase 2
ESR1 estrogen receptor 1
EVL Enah/Vasp-like
F3 coagulation factor III (thromboplastin, tissue factor)
FBXO44 F-box protein 44
FCGR2A Fc fragment of IgG, low affinity IIa, receptor (CD32)
FEN1 flap structure-specific endonuclease 1
FH fumarate hydratase
FKBP1A FK506 binding protein 1A, 12kDa
FLT1 fms-related tyrosine kinase 1
FN1 fibronectin 1
FTSJ1 FtsJ RNA methyltransferase homolog 1 (E. coli)
G3BP1 GTPase activating protein (SH3 domain) binding protein 1
G6PD glucose-6-phosphate dehydrogenase
GADD45G growth arrest and DNA-damage-inducible, gamma
GALP galanin-like peptide
GAPDH glyceraldehyde-3-phosphate dehydrogenase
GARS glycyl-tRNA synthetase
GDF15 growth differentiation factor 15
GEN1 GEN1 Holliday junction 5' flap endonuclease
GGT1 gamma-glutamyltransferase 1
GNLY granulysin
GPATCH1 G patch domain containing 1
GSTP1 glutathione S-transferase pi 1
GUCY1B3 guanylate cyclase 1, soluble, beta 3
H2AFX H2A histone family, member X
HBB hemoglobin, beta
HDAC6 histone deacetylase 6
HINT1 histidine triad nucleotide binding protein 1
HMBS hydroxymethylbilane synthase
HRG histidine-rich glycoprotein
HSD17B8 hydroxysteroid (17-beta) dehydrogenase 8
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)
HVCN1 hydrogen voltage gated channel 1
ID2 inhibitor of DNA binding 2, dominant negative helix-loop-helix protein
ID3 inhibitor of DNA binding 3, dominant negative helix-loop-helix protein
IFNG interferon, gamma
IKBKB inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta
IL10 interleukin 10
IL18 interleukin 18
IL1B interleukin 1, beta
IL23A interleukin 23, alpha subunit p19
IL6 interleukin 6
ILK integrin-linked kinase
INPPL1 inositol polyphosphate phosphatase-like 1
IQGAP1 IQ motif containing GTPase activating protein 1
IRF3 interferon regulatory factor 3
ITGA3 integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)
ITGB2 integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)
JUN jun proto-oncogene
KCNH2 potassium channel, voltage gated eag related subfamily H, member 2
KEAP1 kelch-like ECH-associated protein 1
KLK3 kallikrein-related peptidase 3
KMO kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)
KRAS Kirsten rat sarcoma viral oncogene homolog
KRT18 keratin 18, type I
LCN2 lipocalin 2
LTF lactotransferrin
LY96 lymphocyte antigen 96
MED21 mediator complex subunit 21
METAP1 methionyl aminopeptidase 1
METAP2 methionyl aminopeptidase 2
MGAT1 mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
MIR130A microRNA 130a
MIR30C1 microRNA 30c-1
MLH1 mutL homolog 1
MMP10 matrix metallopeptidase 10
MMP14 matrix metallopeptidase 14 (membrane-inserted)
MMP9 matrix metallopeptidase 9
MPO myeloperoxidase
MT2A metallothionein 2A
MTHFR methylenetetrahydrofolate reductase (NAD(P)H)
MUC1 mucin 1, cell surface associated
MUC17 mucin 17, cell surface associated
MUC2 mucin 2, oligomeric mucus/gel-forming
MUC3 intestinal mucin-like
MUC4 mucin 4, cell surface associated
MUC7 mucin 7, secreted
MUTYH mutY homolog
NAGS N-acetylglutamate synthase
NCF4 neutrophil cytosolic factor 4, 40kDa
NCK1 NCK adaptor protein 1
NCOA4 nuclear receptor coactivator 4
NEIL1 nei endonuclease VIII-like 1 (E. coli)
NEIL3 nei endonuclease VIII-like 3 (E. coli)
NEXN nexilin (F actin binding protein)
NFKB1 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1
NME1 NME/NM23 nucleoside diphosphate kinase 1
NOS3 nitric oxide synthase 3 (endothelial cell)
OGG1 8-oxoguanine DNA glycosylase
OLFM4 olfactomedin 4
PAM peptidylglycine alpha-amidating monooxygenase
PARK2 parkin RBR E3 ubiquitin protein ligase
PARP1 poly (ADP-ribose) polymerase 1
PDE4A phosphodiesterase 4A, cAMP-specific
PDSS1 prenyl (decaprenyl) diphosphate synthase, subunit 1
PDSS2 prenyl (decaprenyl) diphosphate synthase, subunit 2
PGLYRP1 peptidoglycan recognition protein 1
PIK3C3 phosphatidylinositol 3-kinase, catalytic subunit type 3
PIK3CG phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma
PLA2G4A phospholipase A2, group IVA (cytosolic, calcium-dependent)
PLCG2 phospholipase C, gamma 2 (phosphatidylinositol-specific)
PLG plasminogen
POLA1 polymerase (DNA directed), alpha 1, catalytic subunit
POLB polymerase (DNA directed), beta
POLK polymerase (DNA directed) kappa
POLN polymerase (DNA directed) nu
POSTN periostin, osteoblast specific factor
PREPL prolyl endopeptidase-like
PRKCZ protein kinase C, zeta
PSG9 pregnancy specific beta-1-glycoprotein 9
PTEN phosphatase and tensin homolog
PTGES prostaglandin E synthase
PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)
RAB11A RAB11A, member RAS oncogene family
RAC1 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)
RAD51 RAD51 recombinase
REXO2 RNA exonuclease 2
RHEB Ras homolog enriched in brain
RHOA ras homolog family member A
RHOC ras homolog family member C
RHOF ras homolog family member F (in filopodia)
RHOG ras homolog family member G
RIPK3 receptor-interacting serine-threonine kinase 3
RLN2 relaxin 2
RND3 Rho family GTPase 3
RPLP0 ribosomal protein, large, P0
RPS3 ribosomal protein S3
RPS6KA1 ribosomal protein S6 kinase, 90kDa, polypeptide 1
RPSA ribosomal protein SA
RYR2 ryanodine receptor 2 (cardiac)
S100A13 S100 calcium binding protein A13
S100A4 S100 calcium binding protein A4
S100A6 S100 calcium binding protein A6
S100A7 S100 calcium binding protein A7
S100A7A S100 calcium binding protein A7A
S100B S100 calcium binding protein B
SDCBP syndecan binding protein (syntenin)
SERPINA1 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1
SERPINF1 serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1
SERPING1 serpin peptidase inhibitor, clade G (C1 inhibitor), member 1
SFPQ splicing factor proline/glutamine-rich
SFRP1 secreted frizzled-related protein 1
SFTPD surfactant protein D
SHH sonic hedgehog
SKP1 S-phase kinase-associated protein 1
SLC10A2 solute carrier family 10 (sodium/bile acid cotransporter), member 2
SLC16A1 solute carrier family 16 (monocarboxylate transporter), member 1
SLC37A4 solute carrier family 37 (glucose-6-phosphate transporter), member 4
SLC4A1 solute carrier family 4 (anion exchanger), member 1 (Diego blood group)
SLC6A4 solute carrier family 6 (neurotransmitter transporter), member 4
SLC7A5 solute carrier family 7 (amino acid transporter light chain, L system), member 5
SLC9A1 solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1
SLC9A3 solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3
SMURF1 SMAD specific E3 ubiquitin protein ligase 1
SNCA synuclein, alpha (non A4 component of amyloid precursor)
SNX9 sorting nexin 9
SOCS3 suppressor of cytokine signaling 3
SPAG11B sperm associated antigen 11B
SPIN1 spindlin 1
SPTA1 spectrin, alpha, erythrocytic 1
SRC SRC proto-oncogene, non-receptor tyrosine kinase
STAT1 signal transducer and activator of transcription 1, 91kDa
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor)
STXBP2 syntaxin binding protein 2
SYK spleen tyrosine kinase
SYT16 synaptotagmin XVI
TAB2 TGF-beta activated kinase 1/MAP3K7 binding protein 2
TAB3 TGF-beta activated kinase 1/MAP3K7 binding protein 3
TALDO1 transaldolase 1
TAS1R3 taste receptor, type 1, member 3
TGFB1 transforming growth factor, beta 1
THTPA thiamine triphosphatase
TLR2 toll-like receptor 2
TLR4 toll-like receptor 4
TLR5 toll-like receptor 5
TMBIM6 transmembrane BAX inhibitor motif containing 6
TNF tumor necrosis factor
TNFRSF1A tumor necrosis factor receptor superfamily, member 1A
TNFSF10 tumor necrosis factor (ligand) superfamily, member 10
TNFSF13 tumor necrosis factor (ligand) superfamily, member 13
TOB1 transducer of ERBB2, 1
TP53 tumor protein p53
TRADD TNFRSF1A-associated via death domain
TRD T cell receptor delta locus
TREM1 triggering receptor expressed on myeloid cells 1
TRG T cell receptor gamma locus
TRMT5 tRNA methyltransferase 5
TXN thioredoxin
TXN2 thioredoxin 2
TXNL4B thioredoxin-like 4B
TYMS thymidylate synthetase
UBA1 ubiquitin-like modifier activating enzyme 1
UBA6 ubiquitin-like modifier activating enzyme 6
UBE2L3 ubiquitin-conjugating enzyme E2L 3
UGCG UDP-glucose ceramide glucosyltransferase
UMOD uromodulin
UNG uracil-DNA glycosylase
UPK3A uroplakin 3A
USP15 ubiquitin specific peptidase 15
WNT1 wingless-type MMTV integration site family, member 1
WRN Werner syndrome, RecQ helicase-like
XCL1 chemokine (C motif) ligand 1
XDH xanthine dehydrogenase