collagen disease Gene Set

Dataset GWASdb SNP-Disease Associations
Category disease or phenotype associations
Type disease
External Link http://jjwanglab.org/gwasdb/gwasdb2/gwasdb2/go_trait/DOID:854
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Genes

87 genes associated with the disease collagen disease in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.

Symbol Name Standardized Value
NEDD4 neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase 1.70502
HLA-DRA major histocompatibility complex, class II, DR alpha 1.50178
STAT4 signal transducer and activator of transcription 4 1.3984
NOTCH4 notch 4 1.28734
HLA-DPA1 major histocompatibility complex, class II, DP alpha 1 1.27447
TNIP1 TNFAIP3 interacting protein 1 1.05823
TNPO3 transportin 3 0.742156
IL12RB2 interleukin 12 receptor, beta 2 0.598774
SOX5 SRY (sex determining region Y)-box 5 0.582648
ITGAM integrin, alpha M (complement component 3 receptor 3 subunit) 0.580467
PXK PX domain containing serine/threonine kinase 0.570922
KIAA0319L KIAA0319-like 0.553014
PSORS1C1 psoriasis susceptibility 1 candidate 1 0.506358
LOC100506023 uncharacterized LOC100506023 0.485931
AGER advanced glycosylation end product-specific receptor 0.485056
TNXB tenascin XB 0.484942
CD247 CD247 molecule 0.484322
HLA-DPB1 major histocompatibility complex, class II, DP beta 1 0.479937
C10ORF11 chromosome 10 open reading frame 11 0.477596
JAZF1 JAZF zinc finger 1 0.472904
HSPA1L heat shock 70kDa protein 1-like 0.458454
SAMD9L sterile alpha motif domain containing 9-like 0.456271
STK19 serine/threonine kinase 19 0.454966
ANKS1A ankyrin repeat and sterile alpha motif domain containing 1A 0.452375
HLA-DQB2 major histocompatibility complex, class II, DQ beta 2 0.452186
ATG5 autophagy related 5 0.446685
AVEN apoptosis, caspase activation inhibitor 0.4461
LINC00305 long intergenic non-protein coding RNA 305 0.44379
MSH5 mutS homolog 5 0.443578
GRB2 growth factor receptor-bound protein 2 0.440452
PHRF1 PHD and ring finger domains 1 0.438935
GRB10 growth factor receptor-bound protein 10 0.438494
CLCA1 chloride channel accessory 1 0.437907
BANP BTG3 associated nuclear protein 0.43661
MACROD2 MACRO domain containing 2 0.436307
C6ORF10 chromosome 6 open reading frame 10 0.43422
RAMP1 receptor (G protein-coupled) activity modifying protein 1 0.433353
CNTNAP2 contactin associated protein-like 2 0.432762
BBS5 Bardet-Biedl syndrome 5 0.432269
GRK4 G protein-coupled receptor kinase 4 0.430311
PRRC2A proline-rich coiled-coil 2A 0.427776
UPK1B uroplakin 1B 0.426972
DPH2 DPH2 homolog (S. cerevisiae) 0.426632
ABCC9 ATP-binding cassette, sub-family C (CFTR/MRP), member 9 0.426425
STPG2 sperm-tail PG-rich repeat containing 2 0.426302
TTC7A tetratricopeptide repeat domain 7A 0.425961
RHPN2 rhophilin, Rho GTPase binding protein 2 0.42479
TMTC1 transmembrane and tetratricopeptide repeat containing 1 0.424638
PDE4B phosphodiesterase 4B, cAMP-specific 0.423831
ANKRD44 ankyrin repeat domain 44 0.421199
ITPR1 inositol 1,4,5-trisphosphate receptor, type 1 0.419482
LAMC2 laminin, gamma 2 0.419335
OPCML opioid binding protein/cell adhesion molecule-like 0.416634
IKZF3 IKAROS family zinc finger 3 (Aiolos) 0.414949
CDH18 cadherin 18, type 2 0.409569
DYSF dysferlin 0.40906
ICA1 islet cell autoantigen 1, 69kDa 0.403622
ADARB2 adenosine deaminase, RNA-specific, B2 (non-functional) 0.402846
UBE2L3 ubiquitin-conjugating enzyme E2L 3 0.402751
SMAD3 SMAD family member 3 0.402658
CNDP2 CNDP dipeptidase 2 (metallopeptidase M20 family) 0.401319
SORCS2 sortilin-related VPS10 domain containing receptor 2 0.401234
DGKQ diacylglycerol kinase, theta 110kDa 0.399779
RBMS3 RNA binding motif, single stranded interacting protein 3 0.39925
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 0.399029
BANK1 B-cell scaffold protein with ankyrin repeats 1 0.398668
ZNF423 zinc finger protein 423 0.396251
SLIT3 slit homolog 3 (Drosophila) 0.393789
WBSCR17 Williams-Beuren syndrome chromosome region 17 0.39063
CACNA2D1 calcium channel, voltage-dependent, alpha 2/delta subunit 1 0.389535
SFSWAP splicing factor, suppressor of white-apricot family 0.379443
ARMC9 armadillo repeat containing 9 0.37576
TSPAN16 tetraspanin 16 0.375466
IRAK2 interleukin-1 receptor-associated kinase 2 0.375297
NOL10 nucleolar protein 10 0.374845
CHODL chondrolectin 0.374336
NPAS3 neuronal PAS domain protein 3 0.374177
C1QB complement component 1, q subcomponent, B chain 0.373165
SUSD3 sushi domain containing 3 0.372575
CADPS2 Ca++-dependent secretion activator 2 0.372145
FBXO32 F-box protein 32 0.372105
HPGDS hematopoietic prostaglandin D synthase 0.371765
AKAP2 A kinase (PRKA) anchor protein 2 0.360186
TMEM39A transmembrane protein 39A 0.352393
RSBN1 round spermatid basic protein 1 0.350097
FCGR2A Fc fragment of IgG, low affinity IIa, receptor (CD32) 0.337317
MCAT malonyl CoA:ACP acyltransferase (mitochondrial) 0.333937