collagen type xi trimer Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A collagen heterotrimer containing type XI alpha chains in alpha1(XI)alpha2(XI)alpha3(XI) trimers; type XI collagen triple helices associate to form fibrils. (Gene Ontology, GO_0005592)
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Genes

44 proteins co-occuring with the collagen type xi trimer cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
COL11A1 collagen, type XI, alpha 1 1.46948
ITGA11 integrin, alpha 11 1.44064
HABP2 hyaluronan binding protein 2 1.29906
POSTN periostin, osteoblast specific factor 1.13574
HAPLN1 hyaluronan and proteoglycan link protein 1 1.12041
CRYM crystallin, mu 1.00103
DPT dermatopontin 0.913909
GSPT1 G1 to S phase transition 1 0.899499
CHAD chondroadherin 0.833679
COMP cartilage oligomeric matrix protein 0.677673
SOX4 SRY (sex determining region Y)-box 4 0.654741
ACAN aggrecan 0.653019
SOX9 SRY (sex determining region Y)-box 9 0.634586
COL11A2 collagen, type XI, alpha 2 0.620954
COL5A1 collagen, type V, alpha 1 0.609509
COL11A2P1 collagen, type XI, alpha 2 pseudogene 1 0.608241
MATN3 matrilin 3 0.596435
HLA-DRB4 major histocompatibility complex, class II, DR beta 4 0.590973
FBLN1 fibulin 1 0.565508
WNT11 wingless-type MMTV integration site family, member 11 0.563432
PCDH11Y protocadherin 11 Y-linked 0.552664
PCDH11X protocadherin 11 X-linked 0.544
NFYA nuclear transcription factor Y, alpha 0.51694
DDR1 discoidin domain receptor tyrosine kinase 1 0.510011
SFTPD surfactant protein D 0.4958
CDH11 cadherin 11, type 2, OB-cadherin (osteoblast) 0.49499
CP ceruloplasmin (ferroxidase) 0.489731
BMP1 bone morphogenetic protein 1 0.472011
IHH indian hedgehog 0.409089
FMOD fibromodulin 0.392001
FGFR3 fibroblast growth factor receptor 3 0.371216
CDC7 cell division cycle 7 0.366623
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.34645
MGP matrix Gla protein 0.303655
CDC25C cell division cycle 25C 0.289199
FGF7 fibroblast growth factor 7 0.284769
ETS1 v-ets avian erythroblastosis virus E26 oncogene homolog 1 0.275569
COL18A1 collagen, type XVIII, alpha 1 0.24894
THBS1 thrombospondin 1 0.234174
PTGS1 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 0.230245
KDR kinase insert domain receptor 0.213322
CD9 CD9 molecule 0.187333
COL1A1 collagen, type I, alpha 1 0.18702
PTHLH parathyroid hormone-like hormone 0.168101
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