coloboma Gene Set

Dataset HPO Gene-Disease Associations
Category disease or phenotype associations
Type phenotype
Description An eye disease characterized by missing pieces of tissue in structures that form the eye, such as the iris, retina, choroid or optic disc. (Human Disease Ontology, DOID_12270)
External Link http://compbio.charite.de/hpoweb/showterm?id=HP:0000589
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Genes

158 genes associated with the coloboma phenotype by mapping known disease genes to disease phenotypes from the HPO Gene-Disease Associations dataset.

Symbol Name
AAAS achalasia, adrenocortical insufficiency, alacrimia
ABCB6 ATP-binding cassette, sub-family B (MDR/TAP), member 6 (Langereis blood group)
ACTB actin, beta
ACTG1 actin gamma 1
ADAMTSL4 ADAMTS-like 4
ADAR adenosine deaminase, RNA-specific
AHI1 Abelson helper integration site 1
AKT1 v-akt murine thymoma viral oncogene homolog 1
ALDH1A3 aldehyde dehydrogenase 1 family, member A3
ALG2 ALG2, alpha-1,3/1,6-mannosyltransferase
ALG3 ALG3, alpha-1,3- mannosyltransferase
ALX1 ALX homeobox 1
ALX3 ALX homeobox 3
ANK1 ankyrin 1, erythrocytic
ARL13B ADP-ribosylation factor-like 13B
ATOH7 atonal homolog 7 (Drosophila)
B3GALNT2 beta-1,3-N-acetylgalactosaminyltransferase 2
B3GALTL beta 1,3-galactosyltransferase-like
B3GNT1
B9D1 B9 protein domain 1
BCOR BCL6 corepressor
BMP4 bone morphogenetic protein 4
C12ORF57 chromosome 12 open reading frame 57
C5ORF42 chromosome 5 open reading frame 42
CASK calcium/calmodulin-dependent serine protein kinase (MAGUK family)
CC2D2A coiled-coil and C2 domain containing 2A
CCDC22 coiled-coil domain containing 22
CEP290 centrosomal protein 290kDa
CEP41 centrosomal protein 41kDa
CHD7 chromodomain helicase DNA binding protein 7
CHN1 chimerin 1
CLDN19 claudin 19
COL4A1 collagen, type IV, alpha 1
CREBBP CREB binding protein
CRYAA crystallin, alpha A
CRYBA4 crystallin, beta A4
CRYBB1 crystallin, beta B1
CRYBB2 crystallin, beta B2
CRYGC crystallin, gamma C
CRYGD crystallin, gamma D
CSPP1 centrosome and spindle pole associated protein 1
DDX11 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11
DHCR7 7-dehydrocholesterol reductase
DHODH dihydroorotate dehydrogenase (quinone)
DPYD dihydropyrimidine dehydrogenase
ERF Ets2 repressor factor
ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2
FAM111A family with sequence similarity 111, member A
FAM58A family with sequence similarity 58, member A
FBN1 fibrillin 1
FGF3 fibroblast growth factor 3
FGFR2 fibroblast growth factor receptor 2
FKRP fukutin related protein
FKTN fukutin
FLNA filamin A, alpha
FRAS1 Fraser extracellular matrix complex subunit 1
FREM1 FRAS1 related extracellular matrix 1
FREM2 FRAS1 related extracellular matrix protein 2
GDF3 growth differentiation factor 3
GDF6 growth differentiation factor 6
GJA8 gap junction protein, alpha 8, 50kDa
GMPPA GDP-mannose pyrophosphorylase A
GNAQ guanine nucleotide binding protein (G protein), q polypeptide
GRIP1 glutamate receptor interacting protein 1
HCCS holocytochrome c synthase
HHAT hedgehog acyltransferase
HMX1 H6 family homeobox 1
HRAS Harvey rat sarcoma viral oncogene homolog
IFIH1 interferon induced with helicase C domain 1
IGBP1 immunoglobulin (CD79A) binding protein 1
INPP5E inositol polyphosphate-5-phosphatase, 72 kDa
ISPD isoprenoid synthase domain containing
KCTD1 potassium channel tetramerization domain containing 1
KDM6A lysine (K)-specific demethylase 6A
KIAA0196 KIAA0196
KIF1BP KIF1 binding protein
KIF7 kinesin family member 7
KMT2D lysine (K)-specific methyltransferase 2D
KRAS Kirsten rat sarcoma viral oncogene homolog
LARGE like-glycosyltransferase
LETM1 leucine zipper-EF-hand containing transmembrane protein 1
LRP2 low density lipoprotein receptor-related protein 2
MAF v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog
MBTPS2 membrane-bound transcription factor peptidase, site 2
MKS1 Meckel syndrome, type 1
NAA10 N(alpha)-acetyltransferase 10, NatA catalytic subunit
NELFA negative elongation factor complex member A
NIPBL Nipped-B homolog (Drosophila)
NMNAT1 nicotinamide nucleotide adenylyltransferase 1
NOTCH2 notch 2
NPHP1 nephronophthisis 1 (juvenile)
OFD1 oral-facial-digital syndrome 1
OTX2 orthodenticle homeobox 2
PAX2 paired box 2
PAX6 paired box 6
PDE6D phosphodiesterase 6D, cGMP-specific, rod, delta
PIGL phosphatidylinositol glycan anchor biosynthesis, class L
POLR1C polymerase (RNA) I polypeptide C, 30kDa
POLR1D polymerase (RNA) I polypeptide D, 16kDa
POMGNT1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)
POMGNT2 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)
POMK protein-O-mannose kinase
POMT1 protein-O-mannosyltransferase 1
POMT2 protein-O-mannosyltransferase 2
PORCN porcupine homolog (Drosophila)
PQBP1 polyglutamine binding protein 1
PTCH1 patched 1
PTCH2 patched 2
PTEN phosphatase and tensin homolog
PUF60 poly-U binding splicing factor 60KDa
RAB18 RAB18, member RAS oncogene family
RAB3GAP1 RAB3 GTPase activating protein subunit 1 (catalytic)
RAB3GAP2 RAB3 GTPase activating protein subunit 2 (non-catalytic)
RB1 retinoblastoma 1
RIPK4 receptor-interacting serine-threonine kinase 4
RNASEH2A ribonuclease H2, subunit A
RNASEH2B ribonuclease H2, subunit B
RNASEH2C ribonuclease H2, subunit C
RPGRIP1L RPGRIP1-like
RS1 retinoschisin 1
SALL1 spalt-like transcription factor 1
SALL2 spalt-like transcription factor 2
SALL4 spalt-like transcription factor 4
SAMHD1 SAM domain and HD domain 1
SEMA3E sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E
SF3B4 splicing factor 3b, subunit 4, 49kDa
SH2B1 SH2B adaptor protein 1
SHH sonic hedgehog
SIX6 SIX homeobox 6
SOX2 SRY (sex determining region Y)-box 2
SPECC1L sperm antigen with calponin homology and coiled-coil domains 1-like
SRD5A3 steroid 5 alpha-reductase 3
SUFU suppressor of fused homolog (Drosophila)
TBC1D20 TBC1 domain family, member 20
TBX22 T-box 22
TCOF1 Treacher Collins-Franceschetti syndrome 1
TCTN1 tectonic family member 1
TCTN2 tectonic family member 2
TCTN3 tectonic family member 3
TENM3 teneurin transmembrane protein 3
TFAP2A transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)
TMEM114 transmembrane protein 114
TMEM138 transmembrane protein 138
TMEM216 transmembrane protein 216
TMEM231 transmembrane protein 231
TMEM237 transmembrane protein 237
TMEM5 transmembrane protein 5
TMEM67 transmembrane protein 67
TREX1 three prime repair exonuclease 1
TSC1 tuberous sclerosis 1
TSC2 tuberous sclerosis 2
VPS13B vacuolar protein sorting 13 homolog B (yeast)
VSX2 visual system homeobox 2
WHSC1 Wolf-Hirschhorn syndrome candidate 1
WNT3 wingless-type MMTV integration site family, member 3
YAP1 Yes-associated protein 1
ZEB2 zinc finger E-box binding homeobox 2
ZNF423 zinc finger protein 423