colonic Gene Set

Dataset GeneRIF Biological Term Annotations
Category structural or functional annotations
Type biological term
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Genes

334 genes co-occuring with the biological term colonic in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.

Symbol Name
A4GALT alpha 1,4-galactosyltransferase
ABCA5 ATP-binding cassette, sub-family A (ABC1), member 5
ABCB1 ATP-binding cassette, sub-family B (MDR/TAP), member 1
ABCC2 ATP-binding cassette, sub-family C (CFTR/MRP), member 2
ABCG2 ATP-binding cassette, sub-family G (WHITE), member 2 (Junior blood group)
ADAM12 ADAM metallopeptidase domain 12
ADAM15 ADAM metallopeptidase domain 15
ADAMTS10 ADAM metallopeptidase with thrombospondin type 1 motif, 10
ADIPOQ adiponectin, C1Q and collagen domain containing
ADORA1 adenosine A1 receptor
ADORA2A adenosine A2a receptor
ADORA2B adenosine A2b receptor
AICDA activation-induced cytidine deaminase
ALDH1B1 aldehyde dehydrogenase 1 family, member B1
ALOX15 arachidonate 15-lipoxygenase
ALPI alkaline phosphatase, intestinal
ALPK2 alpha-kinase 2
APC adenomatous polyposis coli
APOA1 apolipoprotein A-I
AQP8 aquaporin 8
ARSB arylsulfatase B
ATP2A3 ATPase, Ca++ transporting, ubiquitous
ATP5A1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle
BAD BCL2-associated agonist of cell death
BAG1 BCL2-associated athanogene
BCHE butyrylcholinesterase
BCL2 B-cell CLL/lymphoma 2
BCL2L1 BCL2-like 1
BDNF brain-derived neurotrophic factor
BIRC5 baculoviral IAP repeat containing 5
BMP2 bone morphogenetic protein 2
BRAF B-Raf proto-oncogene, serine/threonine kinase
CABLES1 Cdk5 and Abl enzyme substrate 1
CACNA1C calcium channel, voltage-dependent, L type, alpha 1C subunit
CALB2 calbindin 2
CALCA calcitonin-related polypeptide alpha
CALD1 caldesmon 1
CALR calreticulin
CAMP cathelicidin antimicrobial peptide
CASR calcium-sensing receptor
CAV1 caveolin 1, caveolae protein, 22kDa
CCKBR cholecystokinin B receptor
CCL11 chemokine (C-C motif) ligand 11
CCL2 chemokine (C-C motif) ligand 2
CCL20 chemokine (C-C motif) ligand 20
CCL5 chemokine (C-C motif) ligand 5
CCL7 chemokine (C-C motif) ligand 7
CCND1 cyclin D1
CCR6 chemokine (C-C motif) receptor 6
CD209 CD209 molecule
CD24 CD24 molecule
CD274 CD274 molecule
CD4 CD4 molecule
CD44 CD44 molecule (Indian blood group)
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group)
CD80 CD80 molecule
CD82 CD82 molecule
CD83 CD83 molecule
CD86 CD86 molecule
CDH1 cadherin 1, type 1, E-cadherin (epithelial)
CDKN1A cyclin-dependent kinase inhibitor 1A (p21, Cip1)
CDKN2B cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4)
CDX2 caudal type homeobox 2
CES2 carboxylesterase 2
CFLAR CASP8 and FADD-like apoptosis regulator
CHI3L1 chitinase 3-like 1 (cartilage glycoprotein-39)
CHRM3 cholinergic receptor, muscarinic 3
CHST4 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4
CLCA4 chloride channel accessory 4
CLDN1 claudin 1
CLU clusterin
CNR1 cannabinoid receptor 1 (brain)
CREB1 cAMP responsive element binding protein 1
CRHR1 corticotropin releasing hormone receptor 1
CSNK1D casein kinase 1, delta
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa
CXCL1 chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha)
CXCL10 chemokine (C-X-C motif) ligand 10
CXCL16 chemokine (C-X-C motif) ligand 16
CXCL8 chemokine (C-X-C motif) ligand 8
CXCR3 chemokine (C-X-C motif) receptor 3
CYP27B1 cytochrome P450, family 27, subfamily B, polypeptide 1
CYP2W1 cytochrome P450, family 2, subfamily W, polypeptide 1
DCN decorin
DEFA1A3 defensin, alpha 1 and alpha 3, variable copy number locus
DEFB1 defensin, beta 1
DEFB4A defensin, beta 4A
DPYD dihydropyrimidine dehydrogenase
DSC2 desmocollin 2
DSG2 desmoglein 2
EBAG9 estrogen receptor binding site associated, antigen, 9
EDN1 endothelin 1
EDN3 endothelin 3
EEF1A1 eukaryotic translation elongation factor 1 alpha 1
EGFR epidermal growth factor receptor
EGLN1 egl-9 family hypoxia-inducible factor 1
EGLN2 egl-9 family hypoxia-inducible factor 2
EIF2S1 eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa
ELF3 E74-like factor 3 (ets domain transcription factor, epithelial-specific )
ELK1 ELK1, member of ETS oncogene family
EPHB2 EPH receptor B2
EPO erythropoietin
EPOR erythropoietin receptor
ERBB2 erb-b2 receptor tyrosine kinase 2
ERVW-1 endogenous retrovirus group W, member 1
ESR1 estrogen receptor 1
ESR2 estrogen receptor 2 (ER beta)
F2RL1 coagulation factor II (thrombin) receptor-like 1
F2RL3 coagulation factor II (thrombin) receptor-like 3
F3 coagulation factor III (thromboplastin, tissue factor)
FAAH fatty acid amide hydrolase
FAS Fas cell surface death receptor
FASLG Fas ligand (TNF superfamily, member 6)
FBLN1 fibulin 1
FFAR3 free fatty acid receptor 3
FGF2 fibroblast growth factor 2 (basic)
FGFR4 fibroblast growth factor receptor 4
FLT1 fms-related tyrosine kinase 1
FLT3 fms-related tyrosine kinase 3
FN1 fibronectin 1
FOXM1 forkhead box M1
FOXP3 forkhead box P3
FUBP1 far upstream element (FUSE) binding protein 1
FUT2 fucosyltransferase 2 (secretor status included)
GAST gastrin
GDF15 growth differentiation factor 15
GHR growth hormone receptor
GHRL ghrelin/obestatin prepropeptide
GLI1 GLI family zinc finger 1
GNB2L1 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1
GPBAR1 G protein-coupled bile acid receptor 1
GPER1 G protein-coupled estrogen receptor 1
GRM4 glutamate receptor, metabotropic 4
GSTP1 glutathione S-transferase pi 1
HDAC1 histone deacetylase 1
HES1 hes family bHLH transcription factor 1
HIST1H2BC histone cluster 1, H2bc
HIST1H2BE histone cluster 1, H2be
HIST1H2BF histone cluster 1, H2bf
HIST1H2BG histone cluster 1, H2bg
HIST1H2BI histone cluster 1, H2bi
HIST1H2BK histone cluster 1, H2bk
HIST2H2BE histone cluster 2, H2be
HLTF helicase-like transcription factor
HNRNPK heterogeneous nuclear ribonucleoprotein K
HPGD hydroxyprostaglandin dehydrogenase 15-(NAD)
HPSE heparanase
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1
HSPA1A heat shock 70kDa protein 1A
HTR2B 5-hydroxytryptamine (serotonin) receptor 2B, G protein-coupled
IFNG interferon, gamma
IGF1R insulin-like growth factor 1 receptor
IGF2 insulin-like growth factor 2
IGFBP3 insulin-like growth factor binding protein 3
IL10 interleukin 10
IL11RA interleukin 11 receptor, alpha
IL12B interleukin 12B
IL17A interleukin 17A
IL17C interleukin 17C
IL18 interleukin 18
IL1B interleukin 1, beta
IL22 interleukin 22
IL23A interleukin 23, alpha subunit p19
IL24 interleukin 24
IL2RA interleukin 2 receptor, alpha
IL31 interleukin 31
IL33 interleukin 33
IL4 interleukin 4
IL5 interleukin 5
INS insulin
INSL5 insulin-like 5
ITGA6 integrin, alpha 6
ITGAV integrin, alpha V
ITGB3 integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)
ITGB4 integrin, beta 4
ITLN1 intelectin 1 (galactofuranose binding)
JAK3 Janus kinase 3
KDR kinase insert domain receptor
KEAP1 kelch-like ECH-associated protein 1
KISS1 KiSS-1 metastasis-suppressor
KLB klotho beta
KRAS Kirsten rat sarcoma viral oncogene homolog
KRT7 keratin 7, type II
LCN2 lipocalin 2
LEP leptin
LGALS3 lectin, galactoside-binding, soluble, 3
LST1 leukocyte specific transcript 1
MALL mal, T-cell differentiation protein-like
MAPK14 mitogen-activated protein kinase 14
MCM2 minichromosome maintenance complex component 2
MDK midkine (neurite growth-promoting factor 2)
MFGE8 milk fat globule-EGF factor 8 protein
MGMT O-6-methylguanine-DNA methyltransferase
MICA MHC class I polypeptide-related sequence A
MIR141 microRNA 141
MIR155 microRNA 155
MIR27B microRNA 27b
MKI67 marker of proliferation Ki-67
MLH1 mutL homolog 1
MLNR motilin receptor
MMP1 matrix metallopeptidase 1
MMP2 matrix metallopeptidase 2
MMP3 matrix metallopeptidase 3
MMP7 matrix metallopeptidase 7
MMP9 matrix metallopeptidase 9
MRVI1 murine retrovirus integration site 1 homolog
MSH6 mutS homolog 6
MTAP methylthioadenosine phosphorylase
MTHFR methylenetetrahydrofolate reductase (NAD(P)H)
MUC1 mucin 1, cell surface associated
MUC17 mucin 17, cell surface associated
MUC2 mucin 2, oligomeric mucus/gel-forming
MUC3A mucin 3A, cell surface associated
MUTYH mutY homolog
MYB v-myb avian myeloblastosis viral oncogene homolog
MYOD1 myogenic differentiation 1
NAMPT nicotinamide phosphoribosyltransferase
NCF1C neutrophil cytosolic factor 1C pseudogene
NFE2L2 nuclear factor, erythroid 2-like 2
NFKB1 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1
NKX2-3 NK2 homeobox 3
NMB neuromedin B
NMBR neuromedin B receptor
NMT1 N-myristoyltransferase 1
NOD2 nucleotide-binding oligomerization domain containing 2
NOG noggin
NOS2 nitric oxide synthase 2, inducible
NOTCH1 notch 1
NPSR1 neuropeptide S receptor 1
NR1H4 nuclear receptor subfamily 1, group H, member 4
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)
NRAS neuroblastoma RAS viral (v-ras) oncogene homolog
NTS neurotensin
NTSR1 neurotensin receptor 1 (high affinity)
OVGP1 oviductal glycoprotein 1, 120kDa
PDCD4 programmed cell death 4 (neoplastic transformation inhibitor)
PHB prohibitin
PKD1 polycystic kidney disease 1 (autosomal dominant)
PMP22 peripheral myelin protein 22
PMS2 PMS2 postmeiotic segregation increased 2 (S. cerevisiae)
POU5F1 POU class 5 homeobox 1
PPARG peroxisome proliferator-activated receptor gamma
PRKCB protein kinase C, beta
PRKCD protein kinase C, delta
PRKD1 protein kinase D1
PRMT1 protein arginine methyltransferase 1
PROM1 prominin 1
PTGS1 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)
PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)
PTP4A1 protein tyrosine phosphatase type IVA, member 1
PTP4A2 protein tyrosine phosphatase type IVA, member 2
PTP4A3 protein tyrosine phosphatase type IVA, member 3
RAC1 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)
RARA retinoic acid receptor, alpha
RASSF2 Ras association (RalGDS/AF-6) domain family member 2
RBPJ recombination signal binding protein for immunoglobulin kappa J region
REG3A regenerating islet-derived 3 alpha
RELA v-rel avian reticuloendotheliosis viral oncogene homolog A
RHOA ras homolog family member A
RPS27L ribosomal protein S27-like
S100A4 S100 calcium binding protein A4
S100A9 S100 calcium binding protein A9
SCD stearoyl-CoA desaturase (delta-9-desaturase)
SCNN1B sodium channel, non voltage gated 1 beta subunit
SCNN1G sodium channel, non voltage gated 1 gamma subunit
SDC1 syndecan 1
SELENBP1 selenium binding protein 1
SERPINB5 serpin peptidase inhibitor, clade B (ovalbumin), member 5
SERPINF1 serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1
SHH sonic hedgehog
SLC11A2 solute carrier family 11 (proton-coupled divalent metal ion transporter), member 2
SLC12A1 solute carrier family 12 (sodium/potassium/chloride transporter), member 1
SLC15A1 solute carrier family 15 (oligopeptide transporter), member 1
SLC16A1 solute carrier family 16 (monocarboxylate transporter), member 1
SLC22A5 solute carrier family 22 (organic cation/carnitine transporter), member 5
SLC25A14 solute carrier family 25 (mitochondrial carrier, brain), member 14
SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1
SLC40A1 solute carrier family 40 (iron-regulated transporter), member 1
SLC44A4 solute carrier family 44, member 4
SLC4A1 solute carrier family 4 (anion exchanger), member 1 (Diego blood group)
SLC5A8 solute carrier family 5 (sodium/monocarboxylate cotransporter), member 8
SLC6A4 solute carrier family 6 (neurotransmitter transporter), member 4
SLPI secretory leukocyte peptidase inhibitor
SMAD3 SMAD family member 3
SMAD7 SMAD family member 7
SMTN smoothelin
SNCA synuclein, alpha (non A4 component of amyloid precursor)
SOCS1 suppressor of cytokine signaling 1
SOCS3 suppressor of cytokine signaling 3
SOD2 superoxide dismutase 2, mitochondrial
SOX9 SRY (sex determining region Y)-box 9
SP1 Sp1 transcription factor
SRC SRC proto-oncogene, non-receptor tyrosine kinase
ST14 suppression of tumorigenicity 14 (colon carcinoma)
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor)
STAT4 signal transducer and activator of transcription 4
STAT5A signal transducer and activator of transcription 5A
TAC1 tachykinin, precursor 1
TACR2 tachykinin receptor 2
TAGAP T-cell activation RhoGTPase activating protein
TCF7L2 transcription factor 7-like 2 (T-cell specific, HMG-box)
TDGF1 teratocarcinoma-derived growth factor 1
TGFBR2 transforming growth factor, beta receptor II (70/80kDa)
THY1 Thy-1 cell surface antigen
TICAM1 toll-like receptor adaptor molecule 1
TIE1 tyrosine kinase with immunoglobulin-like and EGF-like domains 1
TIMP1 TIMP metallopeptidase inhibitor 1
TLR2 toll-like receptor 2
TLR3 toll-like receptor 3
TLR4 toll-like receptor 4
TLR5 toll-like receptor 5
TLR8 toll-like receptor 8
TNF tumor necrosis factor
TNFRSF10A tumor necrosis factor receptor superfamily, member 10a
TNFRSF18 tumor necrosis factor receptor superfamily, member 18
TNFSF10 tumor necrosis factor (ligand) superfamily, member 10
TNFSF15 tumor necrosis factor (ligand) superfamily, member 15
TOLLIP toll interacting protein
TP53 tumor protein p53
TPH1 tryptophan hydroxylase 1
TPM3 tropomyosin 3
TPSAB1 tryptase alpha/beta 1
TRA T cell receptor alpha locus
TRAF3 TNF receptor-associated factor 3
TRG T cell receptor gamma locus
TST thiosulfate sulfurtransferase (rhodanese)
TXNRD1 thioredoxin reductase 1
TYMS thymidylate synthetase
UBXN2A UBX domain protein 2A
UGT1A UDP glucuronosyltransferase 1 family, polypeptide A complex locus
VDR vitamin D (1,25- dihydroxyvitamin D3) receptor
VEGFA vascular endothelial growth factor A
WNT9A wingless-type MMTV integration site family, member 9A
WT1 Wilms tumor 1