compartment Gene Set

Dataset GeneRIF Biological Term Annotations
Category structural or functional annotations
Type biological term
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Genes

350 genes co-occuring with the biological term compartment in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.

Symbol Name
AATF apoptosis antagonizing transcription factor
ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1
ABCB1 ATP-binding cassette, sub-family B (MDR/TAP), member 1
ABCG2 ATP-binding cassette, sub-family G (WHITE), member 2 (Junior blood group)
ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase
ACE angiotensin I converting enzyme
ACTN2 actinin, alpha 2
ACTN3 actinin, alpha 3 (gene/pseudogene)
ADAM10 ADAM metallopeptidase domain 10
ADAM17 ADAM metallopeptidase domain 17
ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif, 1
ADAMTS13 ADAM metallopeptidase with thrombospondin type 1 motif, 13
ADAMTS15 ADAM metallopeptidase with thrombospondin type 1 motif, 15
ADAMTS5 ADAM metallopeptidase with thrombospondin type 1 motif, 5
ADAMTS9 ADAM metallopeptidase with thrombospondin type 1 motif, 9
ADCY2 adenylate cyclase 2 (brain)
ADIPOQ adiponectin, C1Q and collagen domain containing
AGER advanced glycosylation end product-specific receptor
AHRR aryl-hydrocarbon receptor repressor
AICDA activation-induced cytidine deaminase
AIRE autoimmune regulator
AKAP10 A kinase (PRKA) anchor protein 10
AKT1 v-akt murine thymoma viral oncogene homolog 1
ALS2 amyotrophic lateral sclerosis 2 (juvenile)
AP3D1 adaptor-related protein complex 3, delta 1 subunit
APOA1 apolipoprotein A-I
APOE apolipoprotein E
APP amyloid beta (A4) precursor protein
AQP2 aquaporin 2 (collecting duct)
AR androgen receptor
ARF1 ADP-ribosylation factor 1
ARF6 ADP-ribosylation factor 6
ARFRP1 ADP-ribosylation factor related protein 1
ARL4A ADP-ribosylation factor-like 4A
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1
ATG4B autophagy related 4B, cysteine peptidase
ATP7A ATPase, Cu++ transporting, alpha polypeptide
BACE1 beta-site APP-cleaving enzyme 1
BCAP31 B-cell receptor-associated protein 31
BCR breakpoint cluster region
BIRC5 baculoviral IAP repeat containing 5
BRAF B-Raf proto-oncogene, serine/threonine kinase
BST2 bone marrow stromal cell antigen 2
CAV1 caveolin 1, caveolae protein, 22kDa
CBLN1 cerebellin 1 precursor
CCND2 cyclin D2
CCNE1 cyclin E1
CCR4 chemokine (C-C motif) receptor 4
CCR5 chemokine (C-C motif) receptor 5 (gene/pseudogene)
CD19 CD19 molecule
CD209 CD209 molecule
CD24 CD24 molecule
CD27 CD27 molecule
CD4 CD4 molecule
CD44 CD44 molecule (Indian blood group)
CD6 CD6 molecule
CD74 CD74 molecule, major histocompatibility complex, class II invariant chain
CD79A CD79a molecule, immunoglobulin-associated alpha
CD79B CD79b molecule, immunoglobulin-associated beta
CD99 CD99 molecule
CDKL5 cyclin-dependent kinase-like 5
CDX2 caudal type homeobox 2
CFLAR CASP8 and FADD-like apoptosis regulator
CFTR cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)
CLEC12A C-type lectin domain family 12, member A
COL6A1 collagen, type VI, alpha 1
COMMD1 copper metabolism (Murr1) domain containing 1
CRP C-reactive protein, pentraxin-related
CSF2 colony stimulating factor 2 (granulocyte-macrophage)
CTGF connective tissue growth factor
CTLA4 cytotoxic T-lymphocyte-associated protein 4
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa
CX3CL1 chemokine (C-X3-C motif) ligand 1
CXCL13 chemokine (C-X-C motif) ligand 13
CXCL8 chemokine (C-X-C motif) ligand 8
CXCR2 chemokine (C-X-C motif) receptor 2
CXCR3 chemokine (C-X-C motif) receptor 3
CYBB cytochrome b-245, beta polypeptide
CYR61 cysteine-rich, angiogenic inducer, 61
DNAAF2 dynein, axonemal, assembly factor 2
DNM2 dynamin 2
DYRK1A dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A
DYRK1B dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B
E4F1 E4F transcription factor 1
EGFR epidermal growth factor receptor
EHD1 EH-domain containing 1
EHD3 EH-domain containing 3
EHD4 EH-domain containing 4
EIF5A eukaryotic translation initiation factor 5A
ELAVL1 ELAV like RNA binding protein 1
ELOVL5 ELOVL fatty acid elongase 5
ENG endoglin
ENPP3 ectonucleotide pyrophosphatase/phosphodiesterase 3
ERAP1 endoplasmic reticulum aminopeptidase 1
ERBB2 erb-b2 receptor tyrosine kinase 2
ERGIC3 ERGIC and golgi 3
ERO1L ERO1-like (S. cerevisiae)
ERP44 endoplasmic reticulum protein 44
F5 coagulation factor V (proaccelerin, labile factor)
FASTKD2 FAST kinase domains 2
FBLN5 fibulin 5
FCGRT Fc fragment of IgG, receptor, transporter, alpha
FGF1 fibroblast growth factor 1 (acidic)
FGF2 fibroblast growth factor 2 (basic)
FGFR1 fibroblast growth factor receptor 1
FGFR2 fibroblast growth factor receptor 2
FGFR3 fibroblast growth factor receptor 3
FGFR4 fibroblast growth factor receptor 4
FHL2 four and a half LIM domains 2
FHOD1 formin homology 2 domain containing 1
FKBP8 FK506 binding protein 8, 38kDa
FLT1 fms-related tyrosine kinase 1
FOLH1 folate hydrolase (prostate-specific membrane antigen) 1
FURIN furin (paired basic amino acid cleaving enzyme)
FXN frataxin
GAL galanin/GMAP prepropeptide
GATA1 GATA binding protein 1 (globin transcription factor 1)
GBF1 golgi brefeldin A resistant guanine nucleotide exchange factor 1
GDF15 growth differentiation factor 15
GGA1 golgi-associated, gamma adaptin ear containing, ARF binding protein 1
GJA1 gap junction protein, alpha 1, 43kDa
GLI1 GLI family zinc finger 1
GMNN geminin, DNA replication inhibitor
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1
GNE glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
GNG2 guanine nucleotide binding protein (G protein), gamma 2
GPHN gephyrin
GPLD1 glycosylphosphatidylinositol specific phospholipase D1
GPX7 glutathione peroxidase 7
GSK3B glycogen synthase kinase 3 beta
GSTT1 glutathione S-transferase theta 1
HAMP hepcidin antimicrobial peptide
HDC histidine decarboxylase
HES1 hes family bHLH transcription factor 1
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)
HLA-A major histocompatibility complex, class I, A
HLA-G major histocompatibility complex, class I, G
HMOX1 heme oxygenase 1
HNRNPD heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)
HPSE heparanase
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)
ICAM1 intercellular adhesion molecule 1
ICOS inducible T-cell co-stimulator
IDH1 isocitrate dehydrogenase 1 (NADP+), soluble
IDH2 isocitrate dehydrogenase 2 (NADP+), mitochondrial
IGF1 insulin-like growth factor 1 (somatomedin C)
IGF1R insulin-like growth factor 1 receptor
IGFBP3 insulin-like growth factor binding protein 3
IHH indian hedgehog
IKBKG inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma
IL10 interleukin 10
IL13 interleukin 13
IL15 interleukin 15
IL18 interleukin 18
IL1B interleukin 1, beta
IL1R1 interleukin 1 receptor, type I
IL3 interleukin 3
IL6 interleukin 6
IL7 interleukin 7
IL7R interleukin 7 receptor
INPP5B inositol polyphosphate-5-phosphatase, 75kDa
INSL3 insulin-like 3 (Leydig cell)
INSRR insulin receptor-related receptor
IRF3 interferon regulatory factor 3
ISCU iron-sulfur cluster assembly enzyme
ITGAL integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)
ITGAM integrin, alpha M (complement component 3 receptor 3 subunit)
JAK2 Janus kinase 2
JAM3 junctional adhesion molecule 3
KCNE1 potassium channel, voltage gated subfamily E regulatory beta subunit 1
KCNH2 potassium channel, voltage gated eag related subfamily H, member 2
KCNK1 potassium channel, two pore domain subfamily K, member 1
KCNQ1 potassium channel, voltage gated KQT-like subfamily Q, member 1
KDR kinase insert domain receptor
KITLG KIT ligand
KLF2 Kruppel-like factor 2
KLF6 Kruppel-like factor 6
KLK2 kallikrein-related peptidase 2
KLK3 kallikrein-related peptidase 3
KLRC2 killer cell lectin-like receptor subfamily C, member 2
KLRD1 killer cell lectin-like receptor subfamily D, member 1
KMT2A lysine (K)-specific methyltransferase 2A
KRAS Kirsten rat sarcoma viral oncogene homolog
L1CAM L1 cell adhesion molecule
LCK LCK proto-oncogene, Src family tyrosine kinase
LDLR low density lipoprotein receptor
LEP leptin
LMTK2 lemur tyrosine kinase 2
LNPEP leucyl/cystinyl aminopeptidase
LRP1 low density lipoprotein receptor-related protein 1
LRRK2 leucine-rich repeat kinase 2
MAF v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog
MAL2 mal, T-cell differentiation protein 2 (gene/pseudogene)
MAP1LC3A microtubule-associated protein 1 light chain 3 alpha
MAPT microtubule-associated protein tau
MCL1 myeloid cell leukemia 1
MCRS1 microspherule protein 1
MET MET proto-oncogene, receptor tyrosine kinase
MICALL1 MICAL-like 1
MIR134 microRNA 134
MIR17HG miR-17-92 cluster host gene
MIR21 microRNA 21
MIR490 microRNA 490
MLC1 megalencephalic leukoencephalopathy with subcortical cysts 1
MMP14 matrix metallopeptidase 14 (membrane-inserted)
MSRA methionine sulfoxide reductase A
MTOR mechanistic target of rapamycin (serine/threonine kinase)
MYO6 myosin VI
NGFR nerve growth factor receptor
NOS3 nitric oxide synthase 3 (endothelial cell)
NPC1 Niemann-Pick disease, type C1
NPC2 Niemann-Pick disease, type C2
NTRK1 neurotrophic tyrosine kinase, receptor, type 1
NUCB2 nucleobindin 2
OFD1 oral-facial-digital syndrome 1
ONECUT1 one cut homeobox 1
OPRL1 opiate receptor-like 1
PDIA2 protein disulfide isomerase family A, member 2
PDX1 pancreatic and duodenal homeobox 1
PECAM1 platelet/endothelial cell adhesion molecule 1
PEX5 peroxisomal biogenesis factor 5
PI4KB phosphatidylinositol 4-kinase, catalytic, beta
PIK3C2A phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha
PIKFYVE phosphoinositide kinase, FYVE finger containing
PKP4 plakophilin 4
PLA2G6 phospholipase A2, group VI (cytosolic, calcium-independent)
PLCB3 phospholipase C, beta 3 (phosphatidylinositol-specific)
PLG plasminogen
PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1
PMEL premelanosome protein
PML promyelocytic leukemia
POU5F1 POU class 5 homeobox 1
PPARG peroxisome proliferator-activated receptor gamma
PRDX4 peroxiredoxin 4
PRKCA protein kinase C, alpha
PRKCD protein kinase C, delta
PRKCE protein kinase C, epsilon
PRKCG protein kinase C, gamma
PRKCH protein kinase C, eta
PRKD1 protein kinase D1
PRNP prion protein
PROM1 prominin 1
PRSS8 protease, serine, 8
PSMA7 proteasome (prosome, macropain) subunit, alpha type, 7
PSMG1 proteasome (prosome, macropain) assembly chaperone 1
PTEN phosphatase and tensin homolog
PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)
PTK7 protein tyrosine kinase 7 (inactive)
PTPN1 protein tyrosine phosphatase, non-receptor type 1
PTPN9 protein tyrosine phosphatase, non-receptor type 9
PVR poliovirus receptor
PXN paxillin
RAB11A RAB11A, member RAS oncogene family
RAB11B RAB11B, member RAS oncogene family
RAB11FIP1 RAB11 family interacting protein 1 (class I)
RAB11FIP3 RAB11 family interacting protein 3 (class II)
RAB11FIP4 RAB11 family interacting protein 4 (class II)
RAB4A RAB4A, member RAS oncogene family
RAB5A RAB5A, member RAS oncogene family
RAB9A RAB9A, member RAS oncogene family
RAC1 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)
RALA v-ral simian leukemia viral oncogene homolog A (ras related)
RB1 retinoblastoma 1
RBSN rabenosyn, RAB effector
RGR retinal G protein coupled receptor
RHEB Ras homolog enriched in brain
RNASE2 ribonuclease, RNase A family, 2 (liver, eosinophil-derived neurotoxin)
RPLP1 ribosomal protein, large, P1
RPLP2 ribosomal protein, large, P2
RXRA retinoid X receptor, alpha
S1PR1 sphingosine-1-phosphate receptor 1
SAFB scaffold attachment factor B
SEC23IP SEC23 interacting protein
SELL selectin L
SERPINB6 serpin peptidase inhibitor, clade B (ovalbumin), member 6
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1
SFN stratifin
SFTPC surfactant protein C
SHH sonic hedgehog
SLC11A2 solute carrier family 11 (proton-coupled divalent metal ion transporter), member 2
SLC23A1 solute carrier family 23 (ascorbic acid transporter), member 1
SLC23A2 solute carrier family 23 (ascorbic acid transporter), member 2
SLC31A1 solute carrier family 31 (copper transporter), member 1
SLC38A2 solute carrier family 38, member 2
SMARCD2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
SMPD1 sphingomyelin phosphodiesterase 1, acid lysosomal
SNAI1 snail family zinc finger 1
SORL1 sortilin-related receptor, L(DLR class) A repeats containing
SORT1 sortilin 1
SOX9 SRY (sex determining region Y)-box 9
SPARC secreted protein, acidic, cysteine-rich (osteonectin)
SPATS2L spermatogenesis associated, serine-rich 2-like
SRC SRC proto-oncogene, non-receptor tyrosine kinase
SRSF2 serine/arginine-rich splicing factor 2
ST14 suppression of tumorigenicity 14 (colon carcinoma)
STARD3NL STARD3 N-terminal like
STARD4 StAR-related lipid transfer (START) domain containing 4
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor)
STX5 syntaxin 5
SYVN1 synovial apoptosis inhibitor 1, synoviolin
TAGLN transgelin
TAGLN2 transgelin 2
TAP1 transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)
TBX21 T-box 21
TCF7L2 transcription factor 7-like 2 (T-cell specific, HMG-box)
TERT telomerase reverse transcriptase
TGFA transforming growth factor, alpha
TGFB1 transforming growth factor, beta 1
TGFB2 transforming growth factor, beta 2
TGIF1 TGFB-induced factor homeobox 1
THBS2 thrombospondin 2
THRA thyroid hormone receptor, alpha
TICAM2 toll-like receptor adaptor molecule 2
TIMP2 TIMP metallopeptidase inhibitor 2
TIMP3 TIMP metallopeptidase inhibitor 3
TLE2 transducin-like enhancer of split 2
TLR3 toll-like receptor 3
TLR4 toll-like receptor 4
TLR9 toll-like receptor 9
TNF tumor necrosis factor
TNFRSF13B tumor necrosis factor receptor superfamily, member 13B
TNFRSF13C tumor necrosis factor receptor superfamily, member 13C
TNFRSF17 tumor necrosis factor receptor superfamily, member 17
TNFSF13 tumor necrosis factor (ligand) superfamily, member 13
TNFSF13B tumor necrosis factor (ligand) superfamily, member 13b
TP53 tumor protein p53
TP73 tumor protein p73
TPST1 tyrosylprotein sulfotransferase 1
TRAF6 TNF receptor-associated factor 6, E3 ubiquitin protein ligase
TRD T cell receptor delta locus
TRPM4 transient receptor potential cation channel, subfamily M, member 4
TRPV1 transient receptor potential cation channel, subfamily V, member 1
TSHR thyroid stimulating hormone receptor
TTPA tocopherol (alpha) transfer protein
TWIST1 twist family bHLH transcription factor 1
TXNRD1 thioredoxin reductase 1
UBE2I ubiquitin-conjugating enzyme E2I
VCAN versican
VEGFA vascular endothelial growth factor A
VPS45 vacuolar protein sorting 45 homolog (S. cerevisiae)
VWF von Willebrand factor
WAS Wiskott-Aldrich syndrome
WIF1 WNT inhibitory factor 1
WWOX WW domain containing oxidoreductase
YIPF5 Yip1 domain family, member 5
ZAP70 zeta-chain (TCR) associated protein kinase 70kDa
ZDHHC9 zinc finger, DHHC-type containing 9
ZEB1 zinc finger E-box binding homeobox 1
ZFP36 ZFP36 ring finger protein