compartments Gene Set

Dataset GeneRIF Biological Term Annotations
Category structural or functional annotations
Type biological term
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Genes

279 genes co-occuring with the biological term compartments in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.

Symbol Name
ABCA3 ATP-binding cassette, sub-family A (ABC1), member 3
ABCB6 ATP-binding cassette, sub-family B (MDR/TAP), member 6 (Langereis blood group)
ACE angiotensin I converting enzyme
ACKR3 atypical chemokine receptor 3
ACOT7 acyl-CoA thioesterase 7
ADAMTS13 ADAM metallopeptidase with thrombospondin type 1 motif, 13
ADIPOQ adiponectin, C1Q and collagen domain containing
ADRA1B adrenoceptor alpha 1B
ADRB2 adrenoceptor beta 2, surface
AGT angiotensinogen (serpin peptidase inhibitor, clade A, member 8)
AHR aryl hydrocarbon receptor
AKAP8L A kinase (PRKA) anchor protein 8-like
AKT1 v-akt murine thymoma viral oncogene homolog 1
ALDH16A1 aldehyde dehydrogenase 16 family, member A1
ALDH7A1 aldehyde dehydrogenase 7 family, member A1
AP2M1 adaptor-related protein complex 2, mu 1 subunit
APP amyloid beta (A4) precursor protein
AR androgen receptor
ARF6 ADP-ribosylation factor 6
ARHGDIB Rho GDP dissociation inhibitor (GDI) beta
ATG4A autophagy related 4A, cysteine peptidase
ATG4B autophagy related 4B, cysteine peptidase
ATG4D autophagy related 4D, cysteine peptidase
ATM ATM serine/threonine kinase
ATP6V1G3 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G3
ATR ATR serine/threonine kinase
ATXN1 ataxin 1
BACE1 beta-site APP-cleaving enzyme 1
BIRC5 baculoviral IAP repeat containing 5
BRCA1 breast cancer 1, early onset
C3 complement component 3
CALR calreticulin
CAMP cathelicidin antimicrobial peptide
CAT catalase
CAV1 caveolin 1, caveolae protein, 22kDa
CCL5 chemokine (C-C motif) ligand 5
CCR6 chemokine (C-C motif) receptor 6
CD1D CD1d molecule
CD1E CD1e molecule
CD2 CD2 molecule
CD2BP2 CD2 (cytoplasmic tail) binding protein 2
CD36 CD36 molecule (thrombospondin receptor)
CD44 CD44 molecule (Indian blood group)
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group)
CD63 CD63 molecule
CDC25B cell division cycle 25B
CDH1 cadherin 1, type 1, E-cadherin (epithelial)
CDH5 cadherin 5, type 2 (vascular endothelium)
CEACAM1 carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)
CFTR cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)
CHMP1A charged multivesicular body protein 1A
CIDEB cell death-inducing DFFA-like effector b
CLN3 ceroid-lipofuscinosis, neuronal 3
CLTCL1 clathrin, heavy chain-like 1
CORO7 coronin 7
CTH cystathionine gamma-lyase
CTSK cathepsin K
CXCR3 chemokine (C-X-C motif) receptor 3
CXCR4 chemokine (C-X-C motif) receptor 4
DCUN1D1 DCN1, defective in cullin neddylation 1, domain containing 1
DHX36 DEAH (Asp-Glu-Ala-His) box polypeptide 36
DUSP5 dual specificity phosphatase 5
DUSP6 dual specificity phosphatase 6
EGLN1 egl-9 family hypoxia-inducible factor 1
EGLN2 egl-9 family hypoxia-inducible factor 2
EPM2A epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)
ESR1 estrogen receptor 1
ESR2 estrogen receptor 2 (ER beta)
EWSR1 EWS RNA-binding protein 1
FAM126A family with sequence similarity 126, member A
FBXO25 F-box protein 25
FCGR3A Fc fragment of IgG, low affinity IIIa, receptor (CD16a)
FCGRT Fc fragment of IgG, receptor, transporter, alpha
FGF18 fibroblast growth factor 18
FGFR2 fibroblast growth factor receptor 2
FLT1 fms-related tyrosine kinase 1
FMR1 fragile X mental retardation 1
FSD1L fibronectin type III and SPRY domain containing 1-like
FUS FUS RNA binding protein
FXN frataxin
GDNF glial cell derived neurotrophic factor
GFER growth factor, augmenter of liver regeneration
GIPR gastric inhibitory polypeptide receptor
GJA1 gap junction protein, alpha 1, 43kDa
GNB2L1 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1
GP6 glycoprotein VI (platelet)
GRB2 growth factor receptor-bound protein 2
GRIN2B glutamate receptor, ionotropic, N-methyl D-aspartate 2B
GZMB granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)
H3F3A H3 histone, family 3A
HAMP hepcidin antimicrobial peptide
HDAC7 histone deacetylase 7
HFE2 hemochromatosis type 2 (juvenile)
HLA-DRA major histocompatibility complex, class II, DR alpha
HLA-DRB1 major histocompatibility complex, class II, DR beta 1
HSPA4 heat shock 70kDa protein 4
HTT huntingtin
IFI16 interferon, gamma-inducible protein 16
IGF2R insulin-like growth factor 2 receptor
IL10 interleukin 10
IL13RA2 interleukin 13 receptor, alpha 2
IL17A interleukin 17A
IL5RA interleukin 5 receptor, alpha
IL6ST interleukin 6 signal transducer
ITGB2 integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)
ITM2B integral membrane protein 2B
KCNH2 potassium channel, voltage gated eag related subfamily H, member 2
KDR kinase insert domain receptor
KIAA0368 KIAA0368
KIR2DL4 killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 4
KIT v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog
KRAS Kirsten rat sarcoma viral oncogene homolog
LAG3 lymphocyte-activation gene 3
LAMA3 laminin, alpha 3
LAMB3 laminin, beta 3
LAMC2 laminin, gamma 2
LAPTM5 lysosomal protein transmembrane 5
LBP lipopolysaccharide binding protein
LEP leptin
LHCGR luteinizing hormone/choriogonadotropin receptor
LIMK1 LIM domain kinase 1
LOR loricrin
MAP1LC3A microtubule-associated protein 1 light chain 3 alpha
MAP3K14 mitogen-activated protein kinase kinase kinase 14
MAVS mitochondrial antiviral signaling protein
MECP2 methyl CpG binding protein 2
MET MET proto-oncogene, receptor tyrosine kinase
MIR571 microRNA 571
MIR652 microRNA 652
MKNK1 MAP kinase interacting serine/threonine kinase 1
MMP1 matrix metallopeptidase 1
MMP12 matrix metallopeptidase 12
MMP14 matrix metallopeptidase 14 (membrane-inserted)
MMP25 matrix metallopeptidase 25
MMP9 matrix metallopeptidase 9
MTOR mechanistic target of rapamycin (serine/threonine kinase)
MYO5A myosin VA (heavy chain 12, myoxin)
MYO5B myosin VB
NAA10 N(alpha)-acetyltransferase 10, NatA catalytic subunit
NANOG Nanog homeobox
NCOA6 nuclear receptor coactivator 6
NDN necdin, melanoma antigen (MAGE) family member
NEDD4 neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase
NEO1 neogenin 1
NFKB1 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1
NHP2L1 NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)
NOP58 NOP58 ribonucleoprotein
NOS1 nitric oxide synthase 1 (neuronal)
NOS2 nitric oxide synthase 2, inducible
NOS3 nitric oxide synthase 3 (endothelial cell)
NOX4 NADPH oxidase 4
NPC1 Niemann-Pick disease, type C1
NPC2 Niemann-Pick disease, type C2
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin)
NPY neuropeptide Y
NR1I2 nuclear receptor subfamily 1, group I, member 2
NRAS neuroblastoma RAS viral (v-ras) oncogene homolog
NRG1 neuregulin 1
NUCLEOLIN nucleolin multifunctional protein
NUP98 nucleoporin 98kDa
OCLN occludin
OLIG2 oligodendrocyte lineage transcription factor 2
PARG poly (ADP-ribose) glycohydrolase
PDCD6IP programmed cell death 6 interacting protein
PDE10A phosphodiesterase 10A
PDE3A phosphodiesterase 3A, cGMP-inhibited
PDGFRA platelet-derived growth factor receptor, alpha polypeptide
PECAM1 platelet/endothelial cell adhesion molecule 1
PGF placental growth factor
PGR progesterone receptor
PI4KB phosphatidylinositol 4-kinase, catalytic, beta
PICK1 protein interacting with PRKCA 1
PINK1 PTEN induced putative kinase 1
PLAC1 placenta-specific 1
PLCD1 phospholipase C, delta 1
PLCD4 phospholipase C, delta 4
PLD1 phospholipase D1, phosphatidylcholine-specific
PLSCR1 phospholipid scramblase 1
PML promyelocytic leukemia
POLDIP2 polymerase (DNA-directed), delta interacting protein 2
POU5F1 POU class 5 homeobox 1
PPA2 pyrophosphatase (inorganic) 2
PPARGC1A peroxisome proliferator-activated receptor gamma, coactivator 1 alpha
PRKACA protein kinase, cAMP-dependent, catalytic, alpha
PRKACB protein kinase, cAMP-dependent, catalytic, beta
PRKCA protein kinase C, alpha
PRKCI protein kinase C, iota
PRKCZ protein kinase C, zeta
PRKD3 protein kinase D3
PRKDC protein kinase, DNA-activated, catalytic polypeptide
PTEN phosphatase and tensin homolog
PTGDR prostaglandin D2 receptor (DP)
PTGER2 prostaglandin E receptor 2 (subtype EP2), 53kDa
PTGER3 prostaglandin E receptor 3 (subtype EP3)
PTGER4 prostaglandin E receptor 4 (subtype EP4)
PTPN6 protein tyrosine phosphatase, non-receptor type 6
RAB22A RAB22A, member RAS oncogene family
RAB27A RAB27A, member RAS oncogene family
RAB35 RAB35, member RAS oncogene family
RAB3B RAB3B, member RAS oncogene family
RAB3C RAB3C, member RAS oncogene family
RAB43 RAB43, member RAS oncogene family
RAB7A RAB7A, member RAS oncogene family
RAN RAN, member RAS oncogene family
RAPGEF1 Rap guanine nucleotide exchange factor (GEF) 1
RAPGEF3 Rap guanine nucleotide exchange factor (GEF) 3
RASGRP4 RAS guanyl releasing protein 4
RGS4 regulator of G-protein signaling 4
RLIM ring finger protein, LIM domain interacting
RPS6KB1 ribosomal protein S6 kinase, 70kDa, polypeptide 1
RRBP1 ribosome binding protein 1
RRP9 ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast)
S100A12 S100 calcium binding protein A12
S100A6 S100 calcium binding protein A6
SAG S-antigen; retina and pineal gland (arrestin)
SCAPER S-phase cyclin A-associated protein in the ER
SDC1 syndecan 1
SEH1L SEH1-like (S. cerevisiae)
SENP3 SUMO1/sentrin/SMT3 specific peptidase 3
SIRT1 sirtuin 1
SIRT3 sirtuin 3
SLC11A2 solute carrier family 11 (proton-coupled divalent metal ion transporter), member 2
SLC1A2 solute carrier family 1 (glial high affinity glutamate transporter), member 2
SLC22A6 solute carrier family 22 (organic anion transporter), member 6
SLC22A9 solute carrier family 22 (organic anion transporter), member 9
SLC40A1 solute carrier family 40 (iron-regulated transporter), member 1
SLC5A1 solute carrier family 5 (sodium/glucose cotransporter), member 1
SMPD1 sphingomyelin phosphodiesterase 1, acid lysosomal
SNX16 sorting nexin 16
SOD1 superoxide dismutase 1, soluble
SP1 Sp1 transcription factor
SPARC secreted protein, acidic, cysteine-rich (osteonectin)
SPG21 spastic paraplegia 21 (autosomal recessive, Mast syndrome)
SQSTM1 sequestosome 1
SREBF1 sterol regulatory element binding transcription factor 1
SST somatostatin
STARD4 StAR-related lipid transfer (START) domain containing 4
STIM1 stromal interaction molecule 1
STX3 syntaxin 3
TACC1 transforming, acidic coiled-coil containing protein 1
TBCE tubulin folding cofactor E
TBP TATA box binding protein
TBX2 T-box 2
TBXA2R thromboxane A2 receptor
TERT telomerase reverse transcriptase
TES testin LIM domain protein
TFAP2C transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)
TGFB1 transforming growth factor, beta 1
TGM2 transglutaminase 2
THRB thyroid hormone receptor, beta
TIMP2 TIMP metallopeptidase inhibitor 2
TJP1 tight junction protein 1
TLR2 toll-like receptor 2
TLR3 toll-like receptor 3
TLR4 toll-like receptor 4
TLR7 toll-like receptor 7
TLR8 toll-like receptor 8
TLR9 toll-like receptor 9
TMEM106B transmembrane protein 106B
TMEM9 transmembrane protein 9
TMPRSS6 transmembrane protease, serine 6
TNF tumor necrosis factor
TOLLIP toll interacting protein
TOR1A torsin family 1, member A (torsin A)
TP53 tumor protein p53
TRAF3 TNF receptor-associated factor 3
TRIM22 tripartite motif containing 22
TRPM1 transient receptor potential cation channel, subfamily M, member 1
TRPM2 transient receptor potential cation channel, subfamily M, member 2
TRPM8 transient receptor potential cation channel, subfamily M, member 8
UBTF upstream binding transcription factor, RNA polymerase I
VAMP3 vesicle-associated membrane protein 3
VEGFA vascular endothelial growth factor A
VGLL4 vestigial-like family member 4
VPS4A vacuolar protein sorting 4 homolog A (S. cerevisiae)
VSNL1 visinin-like 1
VWF von Willebrand factor
ZBTB16 zinc finger and BTB domain containing 16