copd Gene Set

Dataset GeneRIF Biological Term Annotations
Category structural or functional annotations
Type biological term
Description A group of disorders affecting the bronchi and the lung parenchyma. It is characterized by chronic and irreversible obstruction of the airflow. It includes chronic bronchitis and pulmonary emphysema.|A disease of chronic diffuse irreversible airflow obstruction. Subcategories of COPD include CHRONIC BRONCHITIS and PULMONARY EMPHYSEMA.|A chronic and progressive lung disorder characterized by the loss of elasticity of the bronchial tree and the air sacs, destruction of the air sacs wall, thickening of the bronchial wall, and mucous accumulation in the bronchial tree. The pathologic changes result in the disruption of the air flow in the bronchial airways. Signs and symptoms include shortness of breath, wheezing, productive cough, and chest tightness. The two main types of chronic obstructive pulmonary disease are chronic obstructive bronchitis and emphysema. (Experimental Factor Ontology, EFO_0000341)
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Genes

272 genes co-occuring with the biological term copd in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.

Symbol Name
ABCA3 ATP-binding cassette, sub-family A (ABC1), member 3
ABCC1 ATP-binding cassette, sub-family C (CFTR/MRP), member 1
ACE angiotensin I converting enzyme
ACKR2 atypical chemokine receptor 2
ADA adenosine deaminase
ADAM33 ADAM metallopeptidase domain 33
ADAM8 ADAM metallopeptidase domain 8
ADCY2 adenylate cyclase 2 (brain)
ADIPOQ adiponectin, C1Q and collagen domain containing
ADM adrenomedullin
ADORA2A adenosine A2a receptor
ADORA2B adenosine A2b receptor
ADRB2 adrenoceptor beta 2, surface
AGER advanced glycosylation end product-specific receptor
AIMP1 aminoacyl tRNA synthetase complex-interacting multifunctional protein 1
ALOX15 arachidonate 15-lipoxygenase
ANGPT2 angiopoietin 2
ANK3 ankyrin 3, node of Ranvier (ankyrin G)
APOM apolipoprotein M
AQP5 aquaporin 5
ATF4 activating transcription factor 4
ATF6 activating transcription factor 6
ATP2A1 ATPase, Ca++ transporting, cardiac muscle, fast twitch 1
ATP2A2 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
BAMBI BMP and activin membrane-bound inhibitor
BDNF brain-derived neurotrophic factor
BSG basigin (Ok blood group)
C5 complement component 5
CALCA calcitonin-related polypeptide alpha
CAMP cathelicidin antimicrobial peptide
CAT catalase
CCL11 chemokine (C-C motif) ligand 11
CCL13 chemokine (C-C motif) ligand 13
CCL2 chemokine (C-C motif) ligand 2
CCL22 chemokine (C-C motif) ligand 22
CCL5 chemokine (C-C motif) ligand 5
CCL7 chemokine (C-C motif) ligand 7
CCND1 cyclin D1
CCR1 chemokine (C-C motif) receptor 1
CCR2 chemokine (C-C motif) receptor 2
CCR5 chemokine (C-C motif) receptor 5 (gene/pseudogene)
CD22 CD22 molecule
CD24 CD24 molecule
CD28 CD28 molecule
CD4 CD4 molecule
CD8A CD8a molecule
CDC6 cell division cycle 6
CDKN1A cyclin-dependent kinase inhibitor 1A (p21, Cip1)
CFTR cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)
CHI3L1 chitinase 3-like 1 (cartilage glycoprotein-39)
CHRM3 cholinergic receptor, muscarinic 3
CHRNA3 cholinergic receptor, nicotinic, alpha 3 (neuronal)
CHRNA5 cholinergic receptor, nicotinic, alpha 5 (neuronal)
CHRNB4 cholinergic receptor, nicotinic, beta 4 (neuronal)
CHUK conserved helix-loop-helix ubiquitous kinase
CLCA1 chloride channel accessory 1
COL1A1 collagen, type I, alpha 1
COPD Pulmonary disease, chronic obstructive, severe early-onset
CRP C-reactive protein, pentraxin-related
CRYAB crystallin, alpha B
CSF2 colony stimulating factor 2 (granulocyte-macrophage)
CST3 cystatin C
CSTA cystatin A (stefin A)
CTLA4 cytotoxic T-lymphocyte-associated protein 4
CTSG cathepsin G
CXCL10 chemokine (C-X-C motif) ligand 10
CXCL13 chemokine (C-X-C motif) ligand 13
CXCL8 chemokine (C-X-C motif) ligand 8
CXCR1 chemokine (C-X-C motif) receptor 1
CXCR3 chemokine (C-X-C motif) receptor 3
CYP1A1 cytochrome P450, family 1, subfamily A, polypeptide 1
CYP2A6 cytochrome P450, family 2, subfamily A, polypeptide 6
CYP2E1 cytochrome P450, family 2, subfamily E, polypeptide 1
CYSLTR1 cysteinyl leukotriene receptor 1
DBH dopamine beta-hydroxylase (dopamine beta-monooxygenase)
DEFB1 defensin, beta 1
DEFB4A defensin, beta 4A
DRD2 dopamine receptor D2
EDN1 endothelin 1
EGFR epidermal growth factor receptor
ELANE elastase, neutrophil expressed
ELN elastin
EPHX1 epoxide hydrolase 1, microsomal (xenobiotic)
F2R coagulation factor II (thrombin) receptor
F2RL1 coagulation factor II (thrombin) receptor-like 1
FAM13A family with sequence similarity 13, member A
FAM19A2 family with sequence similarity 19 (chemokine (C-C motif)-like), member A2
FAS Fas cell surface death receptor
FBLN5 fibulin 5
FBXO32 F-box protein 32
FGA fibrinogen alpha chain
FGB fibrinogen beta chain
FGF10 fibroblast growth factor 10
FGF2 fibroblast growth factor 2 (basic)
FGF7 fibroblast growth factor 7
FGG fibrinogen gamma chain
FGL2 fibrinogen-like 2
FLCN folliculin
FOXA1 forkhead box A1
FOXO1 forkhead box O1
FOXP3 forkhead box P3
FST follistatin
GC group-specific component (vitamin D binding protein)
GCLC glutamate-cysteine ligase, catalytic subunit
GCLM glutamate-cysteine ligase, modifier subunit
GGT1 gamma-glutamyltransferase 1
GHRL ghrelin/obestatin prepropeptide
GMCL1P1 germ cell-less, spermatogenesis associated 1 pseudogene 1
GSR glutathione reductase
GSTCD glutathione S-transferase, C-terminal domain containing
GSTM1 glutathione S-transferase mu 1
GSTO1 glutathione S-transferase omega 1
GSTO2 glutathione S-transferase omega 2
GSTP1 glutathione S-transferase pi 1
GSTT1 glutathione S-transferase theta 1
GYPA glycophorin A (MNS blood group)
GZMA granzyme A (granzyme 1, cytotoxic T-lymphocyte-associated serine esterase 3)
HCK HCK proto-oncogene, Src family tyrosine kinase
HCRT hypocretin (orexin) neuropeptide precursor
HDAC2 histone deacetylase 2
HDAC6 histone deacetylase 6
HDAC7 histone deacetylase 7
HHIP hedgehog interacting protein
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)
HLA-DPB1 major histocompatibility complex, class II, DP beta 1
HMGB1 high mobility group box 1
HMOX1 heme oxygenase 1
HP haptoglobin
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1
HSPA1A heat shock 70kDa protein 1A
HSPA4 heat shock 70kDa protein 4
HSPB1 heat shock 27kDa protein 1
HTR4 5-hydroxytryptamine (serotonin) receptor 4, G protein-coupled
ICAM1 intercellular adhesion molecule 1
IGF1 insulin-like growth factor 1 (somatomedin C)
IKBKB inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta
IL10 interleukin 10
IL10RA interleukin 10 receptor, alpha
IL12A interleukin 12A
IL13 interleukin 13
IL16 interleukin 16
IL17A interleukin 17A
IL18 interleukin 18
IL1B interleukin 1, beta
IL1RN interleukin 1 receptor antagonist
IL2RA interleukin 2 receptor, alpha
IL33R interleukin 33 receptor
IL4R interleukin 4 receptor
IL6 interleukin 6
IREB2 iron-responsive element binding protein 2
ITGAL integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)
ITGAM integrin, alpha M (complement component 3 receptor 3 subunit)
ITGB2 integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)
KRT18 keratin 18, type I
LCN1 lipocalin 1
LCN2 lipocalin 2
LEP leptin
LEPQTL1 Leptin, serum levels of
LEPR leptin receptor
MAPK14 mitogen-activated protein kinase 14
MARCO macrophage receptor with collagenous structure
MIF macrophage migration inhibitory factor (glycosylation-inhibiting factor)
MIR106B microRNA 106b
MIR199A1 microRNA 199a-1
MIR7-1 microRNA 7-1
MMP1 matrix metallopeptidase 1
MMP12 matrix metallopeptidase 12
MMP13 matrix metallopeptidase 13
MMP2 matrix metallopeptidase 2
MMP25 matrix metallopeptidase 25
MMP3 matrix metallopeptidase 3
MMP7 matrix metallopeptidase 7
MMP9 matrix metallopeptidase 9
MSR1 macrophage scavenger receptor 1
MSTN myostatin
MUC5AC mucin 5AC, oligomeric mucus/gel-forming
NAMPT nicotinamide phosphoribosyltransferase
NAT2 N-acetyltransferase 2 (arylamine N-acetyltransferase)
NEWENTRY Record to support submission of GeneRIFs for a gene not in Gene (human; man).
NFE2L2 nuclear factor, erythroid 2-like 2
NFKB1 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1
NFKBIA nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha
NKRF NFKB repressing factor
NME9 NME/NM23 family member 9
NNMT nicotinamide N-methyltransferase
NOD2 nucleotide-binding oligomerization domain containing 2
NOS2 nitric oxide synthase 2, inducible
NOS3 nitric oxide synthase 3 (endothelial cell)
NPPB natriuretic peptide B
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)
NTF3 neurotrophin 3
NUCB2 nucleobindin 2
OGG1 8-oxoguanine DNA glycosylase
PARK7 parkinson protein 7
PARP1 poly (ADP-ribose) polymerase 1
PDE4A phosphodiesterase 4A, cAMP-specific
PDGFRB platelet-derived growth factor receptor, beta polypeptide
PIGR polymeric immunoglobulin receptor
PIK3CD phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta
PLA2G2D phospholipase A2, group IID
PLAU plasminogen activator, urokinase
PLAUR plasminogen activator, urokinase receptor
PLTP phospholipid transfer protein
PPARA peroxisome proliferator-activated receptor alpha
PPARG peroxisome proliferator-activated receptor gamma
PPARGC1A peroxisome proliferator-activated receptor gamma, coactivator 1 alpha
PPIA peptidylprolyl isomerase A (cyclophilin A)
PRKCA protein kinase C, alpha
PRTN3 proteinase 3
PTAFR platelet-activating factor receptor
PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)
PTX3 pentraxin 3, long
RAPGEF3 Rap guanine nucleotide exchange factor (GEF) 3
RELA v-rel avian reticuloendotheliosis viral oncogene homolog A
RETN resistin
RNASE3 ribonuclease, RNase A family, 3
ROCK1 Rho-associated, coiled-coil containing protein kinase 1
RORC RAR-related orphan receptor C
SAA1 serum amyloid A1
SCGB1A1 secretoglobin, family 1A, member 1 (uteroglobin)
SERPINA1 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2
SESN2 sestrin 2
SFRP2 secreted frizzled-related protein 2
SFTPA1 surfactant protein A1
SFTPB surfactant protein B
SFTPC surfactant protein C
SFTPD surfactant protein D
SIGLEC14 sialic acid binding Ig-like lectin 14
SIGLEC8 sialic acid binding Ig-like lectin 8
SIRT1 sirtuin 1
SIRT6 sirtuin 6
SLC26A4 solute carrier family 26 (anion exchanger), member 4
SLC6A3 solute carrier family 6 (neurotransmitter transporter), member 3
SLC6A4 solute carrier family 6 (neurotransmitter transporter), member 4
SNAI1 snail family zinc finger 1
SOD1 superoxide dismutase 1, soluble
SOD2 superoxide dismutase 2, mitochondrial
SOD3 superoxide dismutase 3, extracellular
SOX5 SRY (sex determining region Y)-box 5
SPP1 secreted phosphoprotein 1
TACR2 tachykinin receptor 2
TFAM transcription factor A, mitochondrial
TGFB1 transforming growth factor, beta 1
TGFBR3 transforming growth factor, beta receptor III
THSD4 thrombospondin, type I, domain containing 4
TIMP1 TIMP metallopeptidase inhibitor 1
TLR2 toll-like receptor 2
TLR3 toll-like receptor 3
TLR4 toll-like receptor 4
TLR5 toll-like receptor 5
TLR9 toll-like receptor 9
TMEM26 transmembrane protein 26
TNF tumor necrosis factor
TNFRSF11A tumor necrosis factor receptor superfamily, member 11a, NFKB activator
TNFRSF11B tumor necrosis factor receptor superfamily, member 11b
TNFRSF1B tumor necrosis factor receptor superfamily, member 1B
TNFSF11 tumor necrosis factor (ligand) superfamily, member 11
TNNT2 troponin T type 2 (cardiac)
TNS1 tensin 1
TP53 tumor protein p53
TREM1 triggering receptor expressed on myeloid cells 1
TRIM63 tripartite motif containing 63, E3 ubiquitin protein ligase
TRPV1 transient receptor potential cation channel, subfamily V, member 1
TSLP thymic stromal lymphopoietin
VCAM1 vascular cell adhesion molecule 1
VEGFA vascular endothelial growth factor A
XBP1 X-box binding protein 1
XDH xanthine dehydrogenase
XRCC5 X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)
YY1 YY1 transcription factor