copy Gene Set

Dataset GeneRIF Biological Term Annotations
Category structural or functional annotations
Type biological term
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Genes

420 genes co-occuring with the biological term copy in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.

Symbol Name
AATF apoptosis antagonizing transcription factor
ABCA13 ATP-binding cassette, sub-family A (ABC1), member 13
ABCA3 ATP-binding cassette, sub-family A (ABC1), member 3
ABCB1 ATP-binding cassette, sub-family B (MDR/TAP), member 1
ABCC4 ATP-binding cassette, sub-family C (CFTR/MRP), member 4
ABCF1 ATP-binding cassette, sub-family F (GCN20), member 1
ACAN aggrecan
ACTN4 actinin, alpha 4
ACVR1 activin A receptor, type I
AHI1 Abelson helper integration site 1
AHSG alpha-2-HS-glycoprotein
AKR1B10 aldo-keto reductase family 1, member B10 (aldose reductase)
AKT1 v-akt murine thymoma viral oncogene homolog 1
AKT2 v-akt murine thymoma viral oncogene homolog 2
ALK anaplastic lymphoma receptor tyrosine kinase
AMELX amelogenin, X-linked
AMELY amelogenin, Y-linked
AMY1A amylase, alpha 1A (salivary)
ANGPT2 angiopoietin 2
ANKK1 ankyrin repeat and kinase domain containing 1
ANTXR1 anthrax toxin receptor 1
AP2S1 adaptor-related protein complex 2, sigma 1 subunit
APC adenomatous polyposis coli
APOE apolipoprotein E
APP amyloid beta (A4) precursor protein
AR androgen receptor
ARID1B AT rich interactive domain 1B (SWI1-like)
ATAD3A ATPase family, AAA domain containing 3A
AURKA aurora kinase A
AURKB aurora kinase B
AVPR2 arginine vasopressin receptor 2
BANF1 barrier to autointegration factor 1
BCL2 B-cell CLL/lymphoma 2
BIN1 bridging integrator 1
BIRC2 baculoviral IAP repeat containing 2
BIRC3 baculoviral IAP repeat containing 3
BMP2 bone morphogenetic protein 2
BMP5 bone morphogenetic protein 5
BMP7 bone morphogenetic protein 7
BPY2 basic charge, Y-linked, 2
BRAF B-Raf proto-oncogene, serine/threonine kinase
BRCA1 breast cancer 1, early onset
BRCA2 breast cancer 2, early onset
C11ORF30 chromosome 11 open reading frame 30
C4A complement component 4A (Rodgers blood group)
C4B complement component 4B (Chido blood group)
C9ORF72 chromosome 9 open reading frame 72
CAPN10 calpain 10
CASP1 caspase 1, apoptosis-related cysteine peptidase
CBL Cbl proto-oncogene, E3 ubiquitin protein ligase
CCL3 chemokine (C-C motif) ligand 3
CCL3L1 chemokine (C-C motif) ligand 3-like 1
CCL4 chemokine (C-C motif) ligand 4
CCL4L1 chemokine (C-C motif) ligand 4-like 1
CCL4L2 chemokine (C-C motif) ligand 4-like 2
CCND1 cyclin D1
CCNE1 cyclin E1
CCR5 chemokine (C-C motif) receptor 5 (gene/pseudogene)
CD226 CD226 molecule
CD274 CD274 molecule
CDH13 cadherin 13
CDKL5 cyclin-dependent kinase-like 5
CDKN2A cyclin-dependent kinase inhibitor 2A
CDY1 chromodomain protein, Y-linked, 1
CEACAM5 carcinoembryonic antigen-related cell adhesion molecule 5
CFH complement factor H
CFTR cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)
CHD1L chromodomain helicase DNA binding protein 1-like
CHD7 chromodomain helicase DNA binding protein 7
CHRFAM7A CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion
CHRM2 cholinergic receptor, muscarinic 2
CHST9 carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9
CIC capicua transcriptional repressor
CKS1B CDC28 protein kinase regulatory subunit 1B
CLCN1 chloride channel, voltage-sensitive 1
CNTN4 contactin 4
CNTNAP2 contactin associated protein-like 2
COL1A1 collagen, type I, alpha 1
CR1 complement component (3b/4b) receptor 1 (Knops blood group)
CREB1 cAMP responsive element binding protein 1
CRTC1 CREB regulated transcription coactivator 1
CSE1L CSE1 chromosome segregation 1-like (yeast)
CSF2 colony stimulating factor 2 (granulocyte-macrophage)
CTCF CCCTC-binding factor (zinc finger protein)
CTNNA3 catenin (cadherin-associated protein), alpha 3
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa
CYP1A1 cytochrome P450, family 1, subfamily A, polypeptide 1
CYP21A2 cytochrome P450, family 21, subfamily A, polypeptide 2
CYP2A6 cytochrome P450, family 2, subfamily A, polypeptide 6
CYP2D6 cytochrome P450, family 2, subfamily D, polypeptide 6
DAZ1 deleted in azoospermia 1
DAZ2 deleted in azoospermia 2
DAZ4 deleted in azoospermia 4
DDC dopa decarboxylase (aromatic L-amino acid decarboxylase)
DEFA1 defensin, alpha 1
DEFA1A3 defensin, alpha 1 and alpha 3, variable copy number locus
DEFA3 defensin, alpha 3, neutrophil-specific
DEFB1 defensin, beta 1
DEFB103A defensin, beta 103A
DEFB103B defensin, beta 103B
DEFB104A defensin, beta 104A
DEFB104B defensin, beta 104B
DEFB107A defensin, beta 107A
DEFB108P2 defensin, beta 108, pseudogene 2
DEFB4A defensin, beta 4A
DIDO1 death inducer-obliterator 1
DLX4 distal-less homeobox 4
DMD dystrophin
DNMT1 DNA (cytosine-5-)-methyltransferase 1
DPY19L2 dpy-19-like 2 (C. elegans)
DRD2 dopamine receptor D2
DRD4 dopamine receptor D4
DST dystonin
DYRK1A dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A
E2F1 E2F transcription factor 1
EDN1 endothelin 1
EGF epidermal growth factor
EGFR epidermal growth factor receptor
EGR1 early growth response 1
EIF3F eukaryotic translation initiation factor 3, subunit F
EIF3H eukaryotic translation initiation factor 3, subunit H
ELF3 E74-like factor 3 (ets domain transcription factor, epithelial-specific )
EPHA3 EPH receptor A3
ERBB2 erb-b2 receptor tyrosine kinase 2
ERBB3 erb-b2 receptor tyrosine kinase 3
ERBB4 erb-b2 receptor tyrosine kinase 4
ERCC1 excision repair cross-complementation group 1
EREG epiregulin
ERG v-ets avian erythroblastosis virus E26 oncogene homolog
ESR1 estrogen receptor 1
ESR2 estrogen receptor 2 (ER beta)
ETV3 ets variant 3
EWSR1 EWS RNA-binding protein 1
EYS eyes shut homolog (Drosophila)
F8 coagulation factor VIII, procoagulant component
FAM134B family with sequence similarity 134, member B
FAM86B2 family with sequence similarity 86, member B2
FBXO31 F-box protein 31
FBXW4 F-box and WD repeat domain containing 4
FBXW7 F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase
FCGR2A Fc fragment of IgG, low affinity IIa, receptor (CD32)
FCGR2B Fc fragment of IgG, low affinity IIb, receptor (CD32)
FCGR2C Fc fragment of IgG, low affinity IIc, receptor for (CD32) (gene/pseudogene)
FCGR3A Fc fragment of IgG, low affinity IIIa, receptor (CD16a)
FCGR3B Fc fragment of IgG, low affinity IIIb, receptor (CD16b)
FGFR1 fibroblast growth factor receptor 1
FLG filaggrin
FOXC1 forkhead box C1
FOXG1 forkhead box G1
FOXO3 forkhead box O3
FOXP1 forkhead box P1
FREM1 FRAS1 related extracellular matrix 1
FTO fat mass and obesity associated
GAD1 glutamate decarboxylase 1 (brain, 67kDa)
GATA4 GATA binding protein 4
GC group-specific component (vitamin D binding protein)
GDF9 growth differentiation factor 9
GJA5 gap junction protein, alpha 5, 40kDa
GJC2 gap junction protein, gamma 2, 47kDa
GNAS GNAS complex locus
GNB3 guanine nucleotide binding protein (G protein), beta polypeptide 3
GOLPH3 golgi phosphoprotein 3 (coat-protein)
GPAA1 glycosylphosphatidylinositol anchor attachment 1
GRM7 glutamate receptor, metabotropic 7
GRN granulin
GSK3B glycogen synthase kinase 3 beta
GSTA5 glutathione S-transferase alpha 5
GSTM1 glutathione S-transferase mu 1
GSTM4 glutathione S-transferase mu 4
GSTT1 glutathione S-transferase theta 1
GSTT2 glutathione S-transferase theta 2 (gene/pseudogene)
GTF2H2 general transcription factor IIH, polypeptide 2, 44kDa
H19 H19, imprinted maternally expressed transcript (non-protein coding)
H2AFX H2A histone family, member X
HBA1 hemoglobin, alpha 1
HBA2 hemoglobin, alpha 2
HFE hemochromatosis
HGF hepatocyte growth factor (hepapoietin A; scatter factor)
HLA-DQA1 major histocompatibility complex, class II, DQ alpha 1
HLA-DRB5 major histocompatibility complex, class II, DR beta 5
HMGA2 high mobility group AT-hook 2
HMOX2 heme oxygenase 2
HRH4 histamine receptor H4
HSD17B2 hydroxysteroid (17-beta) dehydrogenase 2
HSD17B4 hydroxysteroid (17-beta) dehydrogenase 4
HSPD1 heat shock 60kDa protein 1 (chaperonin)
HTRA1 HtrA serine peptidase 1
IDH1 isocitrate dehydrogenase 1 (NADP+), soluble
IGF1R insulin-like growth factor 1 receptor
IGF2BP1 insulin-like growth factor 2 mRNA binding protein 1
IL10 interleukin 10
IL12B interleukin 12B
IL13 interleukin 13
IL17F interleukin 17F
IL1A interleukin 1, alpha
IL1B interleukin 1, beta
IL1RN interleukin 1 receptor antagonist
IL21 interleukin 21
IL22 interleukin 22
IL23R interleukin 23 receptor
IL6 interleukin 6
IL6R interleukin 6 receptor
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)
IQGAP1 IQ motif containing GTPase activating protein 1
IRGM immunity-related GTPase family, M
JAK2 Janus kinase 2
KCNA1 potassium channel, voltage gated shaker related subfamily A, member 1
KCNQ1OT1 KCNQ1 opposite strand/antisense transcript 1 (non-protein coding)
KCTD13 potassium channel tetramerization domain containing 13
KDM4A lysine (K)-specific demethylase 4A
KDR kinase insert domain receptor
KIT v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog
KLK5 kallikrein-related peptidase 5
KLK6 kallikrein-related peptidase 6
KRAS Kirsten rat sarcoma viral oncogene homolog
KRT9 keratin 9, type I
LBR lamin B receptor
LEO1 Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
LILRA6 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6
LOXL1 lysyl oxidase-like 1
LPA lipoprotein, Lp(a)
LRIG1 leucine-rich repeats and immunoglobulin-like domains 1
LY6K lymphocyte antigen 6 complex, locus K
MALT1 MALT1 paracaspase
MAML1 mastermind-like 1 (Drosophila)
MAML2 mastermind-like 2 (Drosophila)
MAP2K4 mitogen-activated protein kinase kinase 4
MAPK7 mitogen-activated protein kinase 7
MAPKAPK2 mitogen-activated protein kinase-activated protein kinase 2
MAPT microtubule-associated protein tau
MBD5 methyl-CpG binding domain protein 5
MCL1 myeloid cell leukemia 1
MCPH1 microcephalin 1
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase
MDM4 MDM4, p53 regulator
MECP2 methyl CpG binding protein 2
MED13L mediator complex subunit 13-like
MEFV Mediterranean fever
MET MET proto-oncogene, receptor tyrosine kinase
MIR101-1 microRNA 101-1
MIR137 microRNA 137
MIR138-1 microRNA 138-1
MIR151A microRNA 151a
MIR15A microRNA 15a
MIR16-1 microRNA 16-1
MIR17 microRNA 17
MIR24-2 microRNA 24-2
MMP1 matrix metallopeptidase 1
MMP12 matrix metallopeptidase 12
MPZ myelin protein zero
MTHFR methylenetetrahydrofolate reductase (NAD(P)H)
MVK mevalonate kinase
MYB v-myb avian myeloblastosis viral oncogene homolog
MYC v-myc avian myelocytomatosis viral oncogene homolog
MYCN v-myc avian myelocytomatosis viral oncogene neuroblastoma derived homolog
NAIP NLR family, apoptosis inhibitory protein
NAT2 N-acetyltransferase 2 (arylamine N-acetyltransferase)
NAV3 neuron navigator 3
NCF1 neutrophil cytosolic factor 1
NDC80 NDC80 kinetochore complex component
NEWENTRY Record to support submission of GeneRIFs for a gene not in Gene (human; man).
NF1 neurofibromin 1
NFE2L2 nuclear factor, erythroid 2-like 2
NFIB nuclear factor I/B
NIPBL Nipped-B homolog (Drosophila)
NKX2-1 NK2 homeobox 1
NKX3-1 NK3 homeobox 1
NLGN4X neuroligin 4, X-linked
NLRP1 NLR family, pyrin domain containing 1
NLRP12 NLR family, pyrin domain containing 12
NLRP3 NLR family, pyrin domain containing 3
NOTCH1 notch 1
NPPA natriuretic peptide A
NQO1 NAD(P)H dehydrogenase, quinone 1
NR0B1 nuclear receptor subfamily 0, group B, member 1
NR2E1 nuclear receptor subfamily 2, group E, member 1
NR5A1 nuclear receptor subfamily 5, group A, member 1
NRAS neuroblastoma RAS viral (v-ras) oncogene homolog
NRXN1 neurexin 1
NSUN2 NOP2/Sun RNA methyltransferase family, member 2
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1
NUF2 NUF2, NDC80 kinetochore complex component
NUMA1 nuclear mitotic apparatus protein 1
OCLN occludin
OGG1 8-oxoguanine DNA glycosylase
OPRM1 opioid receptor, mu 1
PAK1 p21 protein (Cdc42/Rac)-activated kinase 1
PARK2 parkin RBR E3 ubiquitin protein ligase
PAX6 paired box 6
PBOV1 prostate and breast cancer overexpressed 1
PBX1 pre-B-cell leukemia homeobox 1
PCDH19 protocadherin 19
PCDHA1 protocadherin alpha 1
PDCD1 programmed cell death 1
PDGFB platelet-derived growth factor beta polypeptide
PDGFRA platelet-derived growth factor receptor, alpha polypeptide
PDGFRB platelet-derived growth factor receptor, beta polypeptide
PDZD2 PDZ domain containing 2
PGD phosphogluconate dehydrogenase
PGR progesterone receptor
PHB prohibitin
PI4KA phosphatidylinositol 4-kinase, catalytic, alpha
PIK3CA phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha
PIK3CG phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma
PKLR pyruvate kinase, liver and RBC
PKP2 plakophilin 2
PLAG1 pleiomorphic adenoma gene 1
PLAU plasminogen activator, urokinase
PLXNA2 plexin A2
PML promyelocytic leukemia
PMP22 peripheral myelin protein 22
POLG polymerase (DNA directed), gamma
POTEB POTE ankyrin domain family, member B
PRKAB1 protein kinase, AMP-activated, beta 1 non-catalytic subunit
PRKACA protein kinase, cAMP-dependent, catalytic, alpha
PRODH proline dehydrogenase (oxidase) 1
PRRT2 proline-rich transmembrane protein 2
PRSS3 protease, serine, 3
PSCA prostate stem cell antigen
PSMD4 proteasome (prosome, macropain) 26S subunit, non-ATPase, 4
PTCH1 patched 1
PTCHD3 patched domain containing 3
PTEN phosphatase and tensin homolog
PTGIR prostaglandin I2 (prostacyclin) receptor (IP)
PTK2 protein tyrosine kinase 2
PTPRC protein tyrosine phosphatase, receptor type, C
PVT1 Pvt1 oncogene (non-protein coding)
PXN paxillin
PYCARD PYD and CARD domain containing
RARA retinoic acid receptor, alpha
RB1 retinoblastoma 1
RBM39 RNA binding motif protein 39
RECQL4 RecQ protein-like 4
RET ret proto-oncogene
RGS16 regulator of G-protein signaling 16
RGSL1 regulator of G-protein signaling like 1
RHOA ras homolog family member A
ROS1 ROS proto-oncogene 1 , receptor tyrosine kinase
RPS14 ribosomal protein S14
RUNX2 runt-related transcription factor 2
SCN1A sodium channel, voltage gated, type I alpha subunit
SDHD succinate dehydrogenase complex, subunit D, integral membrane protein
SEC62 SEC62 homolog (S. cerevisiae)
SEMA4D sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D
SERF1A small EDRK-rich factor 1A (telomeric)
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1
SFMBT1 Scm-like with four mbt domains 1
SGCE sarcoglycan, epsilon
SHANK2 SH3 and multiple ankyrin repeat domains 2
SHANK3 SH3 and multiple ankyrin repeat domains 3
SHC2 SHC (Src homology 2 domain containing) transforming protein 2
SHOX short stature homeobox
SIAH2 siah E3 ubiquitin protein ligase 2
SKIL SKI-like proto-oncogene
SKP2 S-phase kinase-associated protein 2, E3 ubiquitin protein ligase
SLC12A1 solute carrier family 12 (sodium/potassium/chloride transporter), member 1
SLC19A1 solute carrier family 19 (folate transporter), member 1
SLC1A1 solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1
SLC26A4 solute carrier family 26 (anion exchanger), member 4
SLC3A1 solute carrier family 3 (amino acid transporter heavy chain), member 1
SLC6A4 solute carrier family 6 (neurotransmitter transporter), member 4
SLC7A9 solute carrier family 7 (amino acid transporter light chain, bo,+ system), member 9
SMAD4 SMAD family member 4
SMAD5 SMAD family member 5
SMN1 survival of motor neuron 1, telomeric
SMN2 survival of motor neuron 2, centromeric
SNCA synuclein, alpha (non A4 component of amyloid precursor)
SNRPN small nuclear ribonucleoprotein polypeptide N
SOCS6 suppressor of cytokine signaling 6
SOD1 superoxide dismutase 1, soluble
SOX2 SRY (sex determining region Y)-box 2
SOX9 SRY (sex determining region Y)-box 9
SPANXB1 SPANX family, member B1
SPARC secreted protein, acidic, cysteine-rich (osteonectin)
SPAST spastin
SPC24 SPC24, NDC80 kinetochore complex component
SPC25 SPC25, NDC80 kinetochore complex component
SRY sex determining region Y
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor)
STMN1 stathmin 1
STS steroid sulfatase (microsomal), isozyme S
SYK spleen tyrosine kinase
TERC telomerase RNA component
TERT telomerase reverse transcriptase
TEX28 testis expressed 28
TFAM transcription factor A, mitochondrial
TLR2 toll-like receptor 2
TLR4 toll-like receptor 4
TLR7 toll-like receptor 7
TLX3 T-cell leukemia homeobox 3
TMLHE trimethyllysine hydroxylase, epsilon
TMPRSS2 transmembrane protease, serine 2
TNFRSF11A tumor necrosis factor receptor superfamily, member 11a, NFKB activator
TNFRSF13B tumor necrosis factor receptor superfamily, member 13B
TNFRSF1A tumor necrosis factor receptor superfamily, member 1A
TNFRSF6B tumor necrosis factor receptor superfamily, member 6b, decoy
TOP1 topoisomerase (DNA) I
TOP2A topoisomerase (DNA) II alpha 170kDa
TP53 tumor protein p53
TP53BP1 tumor protein p53 binding protein 1
TSPY1 testis specific protein, Y-linked 1
TYMS thymidylate synthetase
UBE2C ubiquitin-conjugating enzyme E2C
URI1 URI1, prefoldin-like chaperone
USP17L2 ubiquitin specific peptidase 17-like family member 2
VEGFA vascular endothelial growth factor A
VLDLR very low density lipoprotein receptor
VPS13A vacuolar protein sorting 13 homolog A (S. cerevisiae)
VPS13B vacuolar protein sorting 13 homolog B (yeast)
WSB1 WD repeat and SOCS box containing 1
WWOX WW domain containing oxidoreductase
XIAP X-linked inhibitor of apoptosis, E3 ubiquitin protein ligase
XRCC4 X-ray repair complementing defective repair in Chinese hamster cells 4
YAP1 Yes-associated protein 1
YBX1 Y box binding protein 1
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta
ZMYND11 zinc finger, MYND-type containing 11
ZNF214 zinc finger protein 214
ZNF639 zinc finger protein 639
ZNF804A zinc finger protein 804A