defined Gene Set

Dataset GeneRIF Biological Term Annotations
Category structural or functional annotations
Type biological term
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Genes

441 genes co-occuring with the biological term defined in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.

Symbol Name
A2M alpha-2-macroglobulin
ABCA12 ATP-binding cassette, sub-family A (ABC1), member 12
ABCB1 ATP-binding cassette, sub-family B (MDR/TAP), member 1
ACAN aggrecan
ACKR1 atypical chemokine receptor 1 (Duffy blood group)
ACTN4 actinin, alpha 4
ADIPOQ adiponectin, C1Q and collagen domain containing
ADORA2A adenosine A2a receptor
ADRA2A adrenoceptor alpha 2A
ADRB2 adrenoceptor beta 2, surface
ADRM1 adhesion regulating molecule 1
AGO2 argonaute RISC catalytic component 2
AGT angiotensinogen (serpin peptidase inhibitor, clade A, member 8)
AKT1 v-akt murine thymoma viral oncogene homolog 1
AKT2 v-akt murine thymoma viral oncogene homolog 2
ALDH1L1 aldehyde dehydrogenase 1 family, member L1
AMH anti-Mullerian hormone
AMOTL1 angiomotin like 1
ANO10 anoctamin 10
ANXA1 annexin A1
AP3B1 adaptor-related protein complex 3, beta 1 subunit
APC adenomatous polyposis coli
APOA1 apolipoprotein A-I
APOA5 apolipoprotein A-V
APOBEC3C apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C
APOE apolipoprotein E
AR androgen receptor
ARL13B ADP-ribosylation factor-like 13B
ATM ATM serine/threonine kinase
ATP7B ATPase, Cu++ transporting, beta polypeptide
ATR ATR serine/threonine kinase
ATRIP ATR interacting protein
AURKA aurora kinase A
AVPR2 arginine vasopressin receptor 2
BCL2 B-cell CLL/lymphoma 2
BCL2L1 BCL2-like 1
BCL3 B-cell CLL/lymphoma 3
BDKRB2 bradykinin receptor B2
BLK BLK proto-oncogene, Src family tyrosine kinase
BMP1 bone morphogenetic protein 1
BMP2 bone morphogenetic protein 2
BMP6 bone morphogenetic protein 6
BRAF B-Raf proto-oncogene, serine/threonine kinase
BRD7 bromodomain containing 7
C1QA complement component 1, q subcomponent, A chain
C1QB complement component 1, q subcomponent, B chain
C1QC complement component 1, q subcomponent, C chain
CA2 carbonic anhydrase II
CACNG2 calcium channel, voltage-dependent, gamma subunit 2
CALHM1 calcium homeostasis modulator 1
CALR calreticulin
CAPN10 calpain 10
CASP3 caspase 3, apoptosis-related cysteine peptidase
CAV1 caveolin 1, caveolae protein, 22kDa
CBFA2T3 core-binding factor, runt domain, alpha subunit 2; translocated to, 3
CBFB core-binding factor, beta subunit
CBL Cbl proto-oncogene, E3 ubiquitin protein ligase
CCKBR cholecystokinin B receptor
CCL5 chemokine (C-C motif) ligand 5
CCND1 cyclin D1
CCRL2 chemokine (C-C motif) receptor-like 2
CD14 CD14 molecule
CD151 CD151 molecule (Raph blood group)
CD24 CD24 molecule
CD274 CD274 molecule
CD44 CD44 molecule (Indian blood group)
CD69 CD69 molecule
CDC25C cell division cycle 25C
CDC42 cell division cycle 42
CDH1 cadherin 1, type 1, E-cadherin (epithelial)
CDH3 cadherin 3, type 1, P-cadherin (placental)
CDK4 cyclin-dependent kinase 4
CDKN1B cyclin-dependent kinase inhibitor 1B (p27, Kip1)
CDKN2A cyclin-dependent kinase inhibitor 2A
CEBPA CCAAT/enhancer binding protein (C/EBP), alpha
CENPA centromere protein A
CEP164 centrosomal protein 164kDa
CETP cholesteryl ester transfer protein, plasma
CFL1 cofilin 1 (non-muscle)
CFLAR CASP8 and FADD-like apoptosis regulator
CFTR cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)
CHGA chromogranin A
CHGB chromogranin B
CIITA class II, major histocompatibility complex, transactivator
CLDN1 claudin 1
CLDN17 claudin 17
CLDN22 claudin 22
CLDN23 claudin 23
CLDN24 claudin 24
CLDN3 claudin 3
CLDN4 claudin 4
CLDN6 claudin 6
CLDN8 claudin 8
CLDN9 claudin 9
CNOT1 CCR4-NOT transcription complex, subunit 1
CNOT2 CCR4-NOT transcription complex, subunit 2
CNOT3 CCR4-NOT transcription complex, subunit 3
CNR2 cannabinoid receptor 2 (macrophage)
COCH cochlin
COL1A1 collagen, type I, alpha 1
COL5A1 collagen, type V, alpha 1
COMMD1 copper metabolism (Murr1) domain containing 1
COPS5 COP9 signalosome subunit 5
CREB1 cAMP responsive element binding protein 1
CREBBP CREB binding protein
CRP C-reactive protein, pentraxin-related
CRTC2 CREB regulated transcription coactivator 2
CSNK1D casein kinase 1, delta
CSNK1E casein kinase 1, epsilon
CST3 cystatin C
CTLA4 cytotoxic T-lymphocyte-associated protein 4
CUX1 cut-like homeobox 1
CXCL10 chemokine (C-X-C motif) ligand 10
CXCL12 chemokine (C-X-C motif) ligand 12
CXCL8 chemokine (C-X-C motif) ligand 8
CXCR2 chemokine (C-X-C motif) receptor 2
CXCR3 chemokine (C-X-C motif) receptor 3
CXCR4 chemokine (C-X-C motif) receptor 4
CYBB cytochrome b-245, beta polypeptide
CYP11A1 cytochrome P450, family 11, subfamily A, polypeptide 1
CYP17A1 cytochrome P450, family 17, subfamily A, polypeptide 1
CYP21A2 cytochrome P450, family 21, subfamily A, polypeptide 2
CYYR1 cysteine/tyrosine-rich 1
DAO D-amino-acid oxidase
DCPS decapping enzyme, scavenger
DDX17 DEAD (Asp-Glu-Ala-Asp) box helicase 17
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5
DEFB103B defensin, beta 103B
DFFB DNA fragmentation factor, 40kDa, beta polypeptide (caspase-activated DNase)
DLAT dihydrolipoamide S-acetyltransferase
DLG1 discs, large homolog 1 (Drosophila)
DMD dystrophin
DOK7 docking protein 7
DRD4 dopamine receptor D4
DROSHA drosha, ribonuclease type III
DSG1 desmoglein 1
DST dystonin
DYRK1A dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A
EARS2 glutamyl-tRNA synthetase 2, mitochondrial
EBAG9 estrogen receptor binding site associated, antigen, 9
EFNB2 ephrin-B2
EGFR epidermal growth factor receptor
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2
ELMO1 engulfment and cell motility 1
ELN elastin
EPAS1 endothelial PAS domain protein 1
EPHA2 EPH receptor A2
EPHB2 EPH receptor B2
ERBB2 erb-b2 receptor tyrosine kinase 2
ERCC1 excision repair cross-complementation group 1
ERCC2 excision repair cross-complementation group 2
ERCC5 excision repair cross-complementation group 5
ERG v-ets avian erythroblastosis virus E26 oncogene homolog
ESR1 estrogen receptor 1
ESR2 estrogen receptor 2 (ER beta)
ETS1 v-ets avian erythroblastosis virus E26 oncogene homolog 1
F2 coagulation factor II (thrombin)
FANCC Fanconi anemia, complementation group C
FAT4 FAT atypical cadherin 4
FBXO11 F-box protein 11
FBXO7 F-box protein 7
FCGR3A Fc fragment of IgG, low affinity IIIa, receptor (CD16a)
FERMT3 fermitin family member 3
FGF2 fibroblast growth factor 2 (basic)
FGFR3 fibroblast growth factor receptor 3
FLCN folliculin
FLT3 fms-related tyrosine kinase 3
FOXE3 forkhead box E3
FOXM1 forkhead box M1
FOXP3 forkhead box P3
FUT2 fucosyltransferase 2 (secretor status included)
FUT6 fucosyltransferase 6 (alpha (1,3) fucosyltransferase)
G6PD glucose-6-phosphate dehydrogenase
GALNS galactosamine (N-acetyl)-6-sulfatase
GBA2 glucosidase, beta (bile acid) 2
GFAP glial fibrillary acidic protein
GFPT1 glutamine--fructose-6-phosphate transaminase 1
GH1 growth hormone 1
GHRL ghrelin/obestatin prepropeptide
GHSR growth hormone secretagogue receptor
GIPC3 GIPC PDZ domain containing family, member 3
GJB1 gap junction protein, beta 1, 32kDa
GM2AP1 GM2 ganglioside activator pseudogene 1
GNE glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
GNRH2 gonadotropin-releasing hormone 2
GNRHR gonadotropin-releasing hormone receptor
GP1BA glycoprotein Ib (platelet), alpha polypeptide
GRIN2B glutamate receptor, ionotropic, N-methyl D-aspartate 2B
GSK3B glycogen synthase kinase 3 beta
GSTP1 glutathione S-transferase pi 1
GUCY2D guanylate cyclase 2D, membrane (retina-specific)
HBD hemoglobin, delta
HFE hemochromatosis
HFE2 hemochromatosis type 2 (juvenile)
HIF1AN hypoxia inducible factor 1, alpha subunit inhibitor
HIST3H3 histone cluster 3, H3
HLA-C major histocompatibility complex, class I, C
HLA-DQA1 major histocompatibility complex, class II, DQ alpha 1
HLA-DQB1 major histocompatibility complex, class II, DQ beta 1
HLA-DRB1 major histocompatibility complex, class II, DR beta 1
HLA-E major histocompatibility complex, class I, E
HLA-F major histocompatibility complex, class I, F
HLA-G major histocompatibility complex, class I, G
HNF1A HNF1 homeobox A
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2)
HNRNPD heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)
HOXB4 homeobox B4
HSPA4 heat shock 70kDa protein 4
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)
HSPA8 heat shock 70kDa protein 8
HSPD1 heat shock 60kDa protein 1 (chaperonin)
HTT huntingtin
HVCN1 hydrogen voltage gated channel 1
IAPP islet amyloid polypeptide
IFI35 interferon-induced protein 35
IFN1@ interferon, type 1, cluster
IFNG interferon, gamma
IGF1 insulin-like growth factor 1 (somatomedin C)
IGF1R insulin-like growth factor 1 receptor
IGFALS insulin-like growth factor binding protein, acid labile subunit
IGFBP3 insulin-like growth factor binding protein 3
IKZF1 IKAROS family zinc finger 1 (Ikaros)
IL10 interleukin 10
IL11 interleukin 11
IL15 interleukin 15
IL17A interleukin 17A
IL1B interleukin 1, beta
IL1RN interleukin 1 receptor antagonist
IL2 interleukin 2
IL23R interleukin 23 receptor
IL6 interleukin 6
INPP5E inositol polyphosphate-5-phosphatase, 72 kDa
INS insulin
INSR insulin receptor
IRF7 interferon regulatory factor 7
ITGA2B integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41)
ITGA6 integrin, alpha 6
ITGAM integrin, alpha M (complement component 3 receptor 3 subunit)
ITGB2 integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)
ITGB3 integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)
JAK2 Janus kinase 2
JUND jun D proto-oncogene
KCNN4 potassium channel, calcium activated intermediate/small conductance subfamily N alpha, member 4
KDM1A lysine (K)-specific demethylase 1A
KDR kinase insert domain receptor
KIAA2022 KIAA2022
KIF2C kinesin family member 2C
KIR2DL2 killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 2
KIR2DS2 killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 2
KIR3DL1 killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 1
KLK14 kallikrein-related peptidase 14
KLRB1 killer cell lectin-like receptor subfamily B, member 1
KMT2A lysine (K)-specific methyltransferase 2A
KMT2D lysine (K)-specific methyltransferase 2D
KNG1 kininogen 1
KRAS Kirsten rat sarcoma viral oncogene homolog
LAMB2 laminin, beta 2 (laminin S)
LBP lipopolysaccharide binding protein
LDLR low density lipoprotein receptor
LGR5 leucine-rich repeat containing G protein-coupled receptor 5
LMNB1 lamin B1
LRTOMT leucine rich transmembrane and O-methyltransferase domain containing
LTB4R leukotriene B4 receptor
LY96 lymphocyte antigen 96
MAP3K8 mitogen-activated protein kinase kinase kinase 8
MAPK4 mitogen-activated protein kinase 4
MAPK9 mitogen-activated protein kinase 9
MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5
MARS methionyl-tRNA synthetase
MBL2 mannose-binding lectin (protein C) 2, soluble
MBNL1 muscleblind-like splicing regulator 1
MBP myelin basic protein
MCCC1 methylcrotonoyl-CoA carboxylase 1 (alpha)
MCCC2 methylcrotonoyl-CoA carboxylase 2 (beta)
MCM7 minichromosome maintenance complex component 7
MDK midkine (neurite growth-promoting factor 2)
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase
MECP2 methyl CpG binding protein 2
MED25 mediator complex subunit 25
MGMT O-6-methylguanine-DNA methyltransferase
MIR181B1 microRNA 181b-1
MIR34C microRNA 34c
MIR376C microRNA 376c
MMAB methylmalonic aciduria (cobalamin deficiency) cblB type
MSH2 mutS homolog 2
MST1R macrophage stimulating 1 receptor
MT-TL1 tRNA
MTHFR methylenetetrahydrofolate reductase (NAD(P)H)
MTOR mechanistic target of rapamycin (serine/threonine kinase)
MYB v-myb avian myeloblastosis viral oncogene homolog
MYH9 myosin, heavy chain 9, non-muscle
NAA60 N(alpha)-acetyltransferase 60, NatF catalytic subunit
NANOG Nanog homeobox
NBN nibrin
NCK1 NCK adaptor protein 1
NEO1 neogenin 1
NEUROG1 neurogenin 1
NEUROG2 neurogenin 2
NFE2L2 nuclear factor, erythroid 2-like 2
NME1 NME/NM23 nucleoside diphosphate kinase 1
NMI N-myc (and STAT) interactor
NMU neuromedin U
NOD2 nucleotide-binding oligomerization domain containing 2
NOG noggin
NOS2 nitric oxide synthase 2, inducible
NOTCH1 notch 1
NOTCH4 notch 4
NOV nephroblastoma overexpressed
NPHS1 nephrosis 1, congenital, Finnish type (nephrin)
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin)
NPPB natriuretic peptide B
NR0B2 nuclear receptor subfamily 0, group B, member 2
NR4A1 nuclear receptor subfamily 4, group A, member 1
NSF N-ethylmaleimide-sensitive factor
NUBP1 nucleotide binding protein 1
NUMA1 nuclear mitotic apparatus protein 1
NUP35 nucleoporin 35kDa
OFD1 oral-facial-digital syndrome 1
OSM oncostatin M
OTC ornithine carbamoyltransferase
PAF1 Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)
PAGR1 PAXIP1 associated glutamate-rich protein 1
PAX6 paired box 6
PDCD1 programmed cell death 1
PDE6D phosphodiesterase 6D, cGMP-specific, rod, delta
PDGFB platelet-derived growth factor beta polypeptide
PDPK1 3-phosphoinositide dependent protein kinase 1
PF4 platelet factor 4
PGF placental growth factor
PIH1D1 PIH1 domain containing 1
PLA2G4A phospholipase A2, group IVA (cytosolic, calcium-dependent)
PLA2G4D phospholipase A2, group IVD (cytosolic)
PLA2G7 phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)
PLAUR plasminogen activator, urokinase receptor
PLCG1 phospholipase C, gamma 1
PLK1 polo-like kinase 1
PML promyelocytic leukemia
POLG polymerase (DNA directed), gamma
POU3F4 POU class 3 homeobox 4
POU5F1 POU class 5 homeobox 1
PPARGC1A peroxisome proliferator-activated receptor gamma, coactivator 1 alpha
PPBP pro-platelet basic protein (chemokine (C-X-C motif) ligand 7)
PPP1R13L protein phosphatase 1, regulatory subunit 13 like
PPP2R4 protein phosphatase 2A activator, regulatory subunit 4
PRAME preferentially expressed antigen in melanoma
PRKACA protein kinase, cAMP-dependent, catalytic, alpha
PRKD2 protein kinase D2
PROCR protein C receptor, endothelial
PROM1 prominin 1
PSMB1 proteasome (prosome, macropain) subunit, beta type, 1
PSMD4 proteasome (prosome, macropain) 26S subunit, non-ATPase, 4
PTEN phosphatase and tensin homolog
PTPN1 protein tyrosine phosphatase, non-receptor type 1
PTPN22 protein tyrosine phosphatase, non-receptor type 22 (lymphoid)
RAC1 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)
RARB retinoic acid receptor, beta
RASD2 RASD family, member 2
RASSF1 Ras association (RalGDS/AF-6) domain family member 1
RB1 retinoblastoma 1
RBFOX1 RNA binding protein, fox-1 homolog (C. elegans) 1
RCAN1 regulator of calcineurin 1
RMND5A required for meiotic nuclear division 5 homolog A (S. cerevisiae)
RNASE3 ribonuclease, RNase A family, 3
RNF111 ring finger protein 111
RORC RAR-related orphan receptor C
RPA1 replication protein A1, 70kDa
RPGRIP1 retinitis pigmentosa GTPase regulator interacting protein 1
RPSA ribosomal protein SA
RTN4R reticulon 4 receptor
RUNX1 runt-related transcription factor 1
RXRA retinoid X receptor, alpha
SALL2 spalt-like transcription factor 2
SCG2 secretogranin II
SCG3 secretogranin III
SELK selenoprotein K
SERPINB7 serpin peptidase inhibitor, clade B (ovalbumin), member 7
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1
SETDB1 SET domain, bifurcated 1
SH2B1 SH2B adaptor protein 1
SHH sonic hedgehog
SIRT3 sirtuin 3
SLC18A2 solute carrier family 18 (vesicular monoamine transporter), member 2
SLC4A1 solute carrier family 4 (anion exchanger), member 1 (Diego blood group)
SLC6A3 solute carrier family 6 (neurotransmitter transporter), member 3
SLC6A4 solute carrier family 6 (neurotransmitter transporter), member 4
SMAD1 SMAD family member 1
SMAD2 SMAD family member 2
SMAD3 SMAD family member 3
SMAD4 SMAD family member 4
SNCA synuclein, alpha (non A4 component of amyloid precursor)
SOST sclerostin
SOX4 SRY (sex determining region Y)-box 4
SP1 Sp1 transcription factor
SPTB spectrin, beta, erythrocytic
STAT4 signal transducer and activator of transcription 4
SYT14 synaptotagmin XIV
TAZ tafazzin
TCF7L2 transcription factor 7-like 2 (T-cell specific, HMG-box)
TERT telomerase reverse transcriptase
TFAP2A transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)
TG thyroglobulin
TGFB1 transforming growth factor, beta 1
TGFB3 transforming growth factor, beta 3
TGFBR1 transforming growth factor, beta receptor 1
TGFBR3 transforming growth factor, beta receptor III
TGM6 transglutaminase 6
THBS1 thrombospondin 1
TLR3 toll-like receptor 3
TLR4 toll-like receptor 4
TLR5 toll-like receptor 5
TLX1 T-cell leukemia homeobox 1
TNF tumor necrosis factor
TNFAIP6 tumor necrosis factor, alpha-induced protein 6
TNFSF10 tumor necrosis factor (ligand) superfamily, member 10
TNFSF13B tumor necrosis factor (ligand) superfamily, member 13b
TOR1A torsin family 1, member A (torsin A)
TP53 tumor protein p53
TP63 tumor protein p63
TP73 tumor protein p73
TRIM5 tripartite motif containing 5
TRPV6 transient receptor potential cation channel, subfamily V, member 6
TRRAP transformation/transcription domain-associated protein
TSC2 tuberous sclerosis 2
TSEN54 TSEN54 tRNA splicing endonuclease subunit
TTN titin
TXNRD1 thioredoxin reductase 1
UBE3A ubiquitin protein ligase E3A
UHRF1 ubiquitin-like with PHD and ring finger domains 1
UPK1A uroplakin 1A
USH2A Usher syndrome 2A (autosomal recessive, mild)
VAV1 vav 1 guanine nucleotide exchange factor
VDR vitamin D (1,25- dihydroxyvitamin D3) receptor
VWF von Willebrand factor
WDR5 WD repeat domain 5
WFDC2 WAP four-disulfide core domain 2
WFS1 Wolfram syndrome 1 (wolframin)
WT1 Wilms tumor 1
XPC xeroderma pigmentosum, complementation group C
ZBTB33 zinc finger and BTB domain containing 33
ZIC1 Zic family member 1
ZIC4 Zic family member 4