dendritic shaft Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description Cylindric portion of the dendrite, directly stemming from the perikaryon, and carrying the dendritic spines. (Gene Ontology, GO_0043198)
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Genes

123 proteins co-occuring with the dendritic shaft cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
PVALB parvalbumin 1.62649
MARCH7 membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 1.54517
TH tyrosine hydroxylase 1.33685
CHAT choline O-acetyltransferase 1.27346
CALB1 calbindin 1, 28kDa 1.22049
ICAM5 intercellular adhesion molecule 5, telencephalin 1.13881
CALB2 calbindin 2 1.13625
GRIA1 glutamate receptor, ionotropic, AMPA 1 1.13063
GRID2IP glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein 0.922791
GAD2 glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa) 0.912511
SST somatostatin 0.898572
SLC17A7 solute carrier family 17 (vesicular glutamate transporter), member 7 0.872726
SLC17A6 solute carrier family 17 (vesicular glutamate transporter), member 6 0.841941
DBN1 drebrin 1 0.826336
CCK cholecystokinin 0.802479
GABRA2 gamma-aminobutyric acid (GABA) A receptor, alpha 2 0.772275
HCN3 hyperpolarization activated cyclic nucleotide gated potassium channel 3 0.754983
SERF1A small EDRK-rich factor 1A (telomeric) 0.741867
SERF1B small EDRK-rich factor 1B (centromeric) 0.741867
TAC1 tachykinin, precursor 1 0.668126
GRIN2B glutamate receptor, ionotropic, N-methyl D-aspartate 2B 0.666827
GPHN gephyrin 0.666394
FARP1 FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived) 0.607395
PSD pleckstrin and Sec7 domain containing 0.585942
SLC12A5 solute carrier family 12 (potassium/chloride transporter), member 5 0.585523
GNPTAB N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits 0.578833
GRIP2 glutamate receptor interacting protein 2 0.555145
GRIA2 glutamate receptor, ionotropic, AMPA 2 0.542352
CA13 carbonic anhydrase XIII 0.534951
JAKMIP1 janus kinase and microtubule interacting protein 1 0.519389
SLC18A3 solute carrier family 18 (vesicular acetylcholine transporter), member 3 0.519389
PPP1R1B protein phosphatase 1, regulatory (inhibitor) subunit 1B 0.51327
GYPE glycophorin E (MNS blood group) 0.50635
DYNLL2 dynein, light chain, LC8-type 2 0.503912
PODN podocan 0.497826
PRG1 p53-responsive gene 1 0.488923
HCN4 hyperpolarization activated cyclic nucleotide gated potassium channel 4 0.48287
NPY neuropeptide Y 0.477636
EPS8 epidermal growth factor receptor pathway substrate 8 0.474822
NEXN nexilin (F actin binding protein) 0.470807
KIRREL3 kin of IRRE like 3 (Drosophila) 0.470406
CHRM4 cholinergic receptor, muscarinic 4 0.469203
PUM2 pumilio RNA-binding family member 2 0.468001
HCN2 hyperpolarization activated cyclic nucleotide gated potassium channel 2 0.458803
KCNC2 potassium channel, voltage gated Shaw related subfamily C, member 2 0.458404
CAMK2G calcium/calmodulin-dependent protein kinase II gamma 0.458404
DISC1 disrupted in schizophrenia 1 0.457606
GRIA4 glutamate receptor, ionotropic, AMPA 4 0.45641
MAP2 microtubule-associated protein 2 0.445275
HCN1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 0.444482
NBEA neurobeachin 0.443689
ABI3 ABI family, member 3 0.4425
KCNJ9 potassium channel, inwardly rectifying subfamily J, member 9 0.437356
AKAP5 A kinase (PRKA) anchor protein 5 0.434196
RAB17 RAB17, member RAS oncogene family 0.423567
GRM4 glutamate receptor, metabotropic 4 0.42082
GAD1 glutamate decarboxylase 1 (brain, 67kDa) 0.413382
GRIK1 glutamate receptor, ionotropic, kainate 1 0.409869
MEA1 male-enhanced antigen 1 0.408309
OPRM1 opioid receptor, mu 1 0.407529
NPS neuropeptide S 0.398587
PPP1R9B protein phosphatase 1, regulatory subunit 9B 0.39626
ITPKA inositol-trisphosphate 3-kinase A 0.391228
PNMT phenylethanolamine N-methyltransferase 0.387365
ACTN2 actinin, alpha 2 0.37966
DNM3 dynamin 3 0.376586
DLG3 discs, large homolog 3 (Drosophila) 0.371982
TMOD4 tropomodulin 4 (muscle) 0.366241
GRIP1 glutamate receptor interacting protein 1 0.361659
GRIN3A glutamate receptor, ionotropic, N-methyl-D-aspartate 3A 0.355944
KCNC4 potassium channel, voltage gated Shaw related subfamily C, member 4 0.351382
RGS7BP regulator of G-protein signaling 7 binding protein 0.346071
HPCA hippocalcin 0.344556
CHRM1 cholinergic receptor, muscarinic 1 0.343799
DBH dopamine beta-hydroxylase (dopamine beta-monooxygenase) 0.342664
EPHA7 EPH receptor A7 0.340773
NCKIPSD NCK interacting protein with SH3 domain 0.338128
GRM1 glutamate receptor, metabotropic 1 0.337373
SLC1A2 solute carrier family 1 (glial high affinity glutamate transporter), member 2 0.33511
SDF4 stromal cell derived factor 4 0.333979
GRIN2A glutamate receptor, ionotropic, N-methyl D-aspartate 2A 0.321201
SCN1A sodium channel, voltage gated, type I alpha subunit 0.315212
KCNA1 potassium channel, voltage gated shaker related subfamily A, member 1 0.307377
HOMER2 homer scaffolding protein 2 0.305515
SLC32A1 solute carrier family 32 (GABA vesicular transporter), member 1 0.297342
RLN3 relaxin 3 0.29586
DLGAP1 discs, large (Drosophila) homolog-associated protein 1 0.294378
CAMK2B calcium/calmodulin-dependent protein kinase II beta 0.289938
DAAM1 dishevelled associated activator of morphogenesis 1 0.285876
DYNLRB1 dynein, light chain, roadblock-type 1 0.282558
CYTH2 cytohesin 2 0.281821
FMN1 formin 1 0.266774
CASK calcium/calmodulin-dependent serine protein kinase (MAGUK family) 0.263485
RGS7 regulator of G-protein signaling 7 0.261296
KIRREL kin of IRRE like (Drosophila) 0.258745
DLG1 discs, large homolog 1 (Drosophila) 0.255834
PPP3R1 protein phosphatase 3, regulatory subunit B, alpha 0.252202
PDYN prodynorphin 0.251839
TLE1 transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila) 0.251114
GRM5 glutamate receptor, metabotropic 5 0.246046
MAP1S microtubule-associated protein 1S 0.239916
RASGRP1 RAS guanyl releasing protein 1 (calcium and DAG-regulated) 0.238837
DRD4 dopamine receptor D4 0.237042
AACS acetoacetyl-CoA synthetase 0.234891
FERMT2 fermitin family member 2 0.234533
PLXNA1 plexin A1 0.234533
MAP4 microtubule-associated protein 4 0.233459
SYP synaptophysin 0.229176
RAB8A RAB8A, member RAS oncogene family 0.224913
CALCA calcitonin-related polypeptide alpha 0.21646
SLC1A3 solute carrier family 1 (glial high affinity glutamate transporter), member 3 0.21228
INA internexin neuronal intermediate filament protein, alpha 0.202346
SEPT6 septin 6 0.18796
SLC1A6 solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6 0.184853
FAT1 FAT atypical cadherin 1 0.181227
PRKAR2B protein kinase, cAMP-dependent, regulatory, type II, beta 0.176587
GRIA3 glutamate receptor, ionotropic, AMPA 3 0.175466
GRASP GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein 0.175188
ADRA2A adrenoceptor alpha 2A 0.170371
RICTOR RPTOR independent companion of MTOR, complex 2 0.16935
TACR1 tachykinin receptor 1 0.168349
NRGN neurogranin (protein kinase C substrate, RC3) 0.163641
ARC activity-regulated cytoskeleton-associated protein 0.162763