duplication Gene Set

Dataset GeneRIF Biological Term Annotations
Category structural or functional annotations
Type biological term
Description A genetic modification in which part of the genome is duplicated (Experimental Factor Ontology, EFO_0004015)
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Genes

293 genes co-occuring with the biological term duplication in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.

Symbol Name
ABCA17P ATP-binding cassette, sub-family A (ABC1), member 17, pseudogene
ABCC6 ATP-binding cassette, sub-family C (CFTR/MRP), member 6
ACAD9 acyl-CoA dehydrogenase family, member 9
ADAMDEC1 ADAM-like, decysin 1
AKAP9 A kinase (PRKA) anchor protein 9
AKT3 v-akt murine thymoma viral oncogene homolog 3
ALDH1A1 aldehyde dehydrogenase 1 family, member A1
ALDH1A2 aldehyde dehydrogenase 1 family, member A2
ALDH1A3 aldehyde dehydrogenase 1 family, member A3
ALDH5A1 aldehyde dehydrogenase 5 family, member A1
APC adenomatous polyposis coli
APP amyloid beta (A4) precursor protein
ARX aristaless related homeobox
ASXL1 additional sex combs like transcriptional regulator 1
ATM ATM serine/threonine kinase
ATP2A2 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
ATP7A ATPase, Cu++ transporting, alpha polypeptide
ATRX alpha thalassemia/mental retardation syndrome X-linked
AURKA aurora kinase A
AXIN1 axin 1
BGLAP bone gamma-carboxyglutamate (gla) protein
BHLHA9 basic helix-loop-helix family, member a9
BIRC5 baculoviral IAP repeat containing 5
BMP2 bone morphogenetic protein 2
BMPR1A bone morphogenetic protein receptor, type IA
BMS1 BMS1 ribosome biogenesis factor
BRAF B-Raf proto-oncogene, serine/threonine kinase
BRCA1 breast cancer 1, early onset
BRCA2 breast cancer 2, early onset
BTK Bruton agammaglobulinemia tyrosine kinase
CACNA2D3 calcium channel, voltage-dependent, alpha 2/delta subunit 3
CBS cystathionine-beta-synthase
CCL3L1 chemokine (C-C motif) ligand 3-like 1
CCL4L1 chemokine (C-C motif) ligand 4-like 1
CCP110 centriolar coiled coil protein 110kDa
CCR8 chemokine (C-C motif) receptor 8
CD276 CD276 molecule
CDC14B cell division cycle 14B
CDKN1A cyclin-dependent kinase inhibitor 1A (p21, Cip1)
CDKN1B cyclin-dependent kinase inhibitor 1B (p27, Kip1)
CDKN2A cyclin-dependent kinase inhibitor 2A
CEBPE CCAAT/enhancer binding protein (C/EBP), epsilon
CENPJ centromere protein J
CEP152 centrosomal protein 152kDa
CEP192 centrosomal protein 192kDa
CEP55 centrosomal protein 55kDa
CEP63 centrosomal protein 63kDa
CEP76 centrosomal protein 76kDa
CES1 carboxylesterase 1
CETN2 centrin, EF-hand protein, 2
CFHR4 complement factor H-related 4
CFHR5 complement factor H-related 5
CFTR cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)
CHIT1 chitinase 1 (chitotriosidase)
CHL1 cell adhesion molecule L1-like
CHM choroideremia (Rab escort protein 1)
CHRFAM7A CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion
CHRNA7 cholinergic receptor, nicotinic, alpha 7 (neuronal)
CHST3 carbohydrate (chondroitin 6) sulfotransferase 3
COL4A5 collagen, type IV, alpha 5
CREBBP CREB binding protein
CYBB cytochrome b-245, beta polypeptide
CYP21A1P cytochrome P450, family 21, subfamily A, polypeptide 1 pseudogene
CYP21A2 cytochrome P450, family 21, subfamily A, polypeptide 2
CYP2A6 cytochrome P450, family 2, subfamily A, polypeptide 6
CYP2D6 cytochrome P450, family 2, subfamily D, polypeptide 6
CYP7B1 cytochrome P450, family 7, subfamily B, polypeptide 1
DAPK2 death-associated protein kinase 2
DHRS2 dehydrogenase/reductase (SDR family) member 2
DHRS4 dehydrogenase/reductase (SDR family) member 4
DMD dystrophin
DRD4 dopamine receptor D4
EGLN2 egl-9 family hypoxia-inducible factor 2
EIF2AK3 eukaryotic translation initiation factor 2-alpha kinase 3
ELL elongation factor RNA polymerase II
ENG endoglin
ENPP2 ectonucleotide pyrophosphatase/phosphodiesterase 2
EPHA5 EPH receptor A5
ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae)
ETNK1 ethanolamine kinase 1
EXT1 exostosin glycosyltransferase 1
F8 coagulation factor VIII, procoagulant component
FABP12 fatty acid binding protein 12
FAM20A family with sequence similarity 20, member A
FANCA Fanconi anemia, complementation group A
FBLN5 fibulin 5
FBP1 fructose-1,6-bisphosphatase 1
FBXW4 F-box and WD repeat domain containing 4
FBXW5 F-box and WD repeat domain containing 5
FERMT1 fermitin family member 1
FGA fibrinogen alpha chain
FGF3 fibroblast growth factor 3
FGF4 fibroblast growth factor 4
FGFR3 fibroblast growth factor receptor 3
FLCN folliculin
FLT3 fms-related tyrosine kinase 3
FMR1 fragile X mental retardation 1
FOXC1 forkhead box C1
FOXC2 forkhead box C2
FOXL2 forkhead box L2
FOXM1 forkhead box M1
FTL ferritin, light polypeptide
GABRB3 gamma-aminobutyric acid (GABA) A receptor, beta 3
GATA4 GATA binding protein 4
GDF9 growth differentiation factor 9
GJB1 gap junction protein, beta 1, 32kDa
GLA galactosidase, alpha
GLUD2 glutamate dehydrogenase 2
GNB3 guanine nucleotide binding protein (G protein), beta polypeptide 3
GOLIM4 golgi integral membrane protein 4
GPR101 G protein-coupled receptor 101
GRIN2B glutamate receptor, ionotropic, N-methyl D-aspartate 2B
GTF2I general transcription factor IIi
HBA2 hemoglobin, alpha 2
HBB hemoglobin, beta
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)
HIRA histone cell cycle regulator
HLA-A major histocompatibility complex, class I, A
HNF1B HNF1 homeobox B
HOXC13 homeobox C13
HOXD13 homeobox D13
HSPA9 heat shock 70kDa protein 9 (mortalin)
ID1 inhibitor of DNA binding 1, dominant negative helix-loop-helix protein
IDH1 isocitrate dehydrogenase 1 (NADP+), soluble
IDH2 isocitrate dehydrogenase 2 (NADP+), mitochondrial
IGF2 insulin-like growth factor 2
IHH indian hedgehog
IL2RA interleukin 2 receptor, alpha
ILK integrin-linked kinase
IMPACT impact RWD domain protein
ITGA4 integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)
ITLN1 intelectin 1 (galactofuranose binding)
ITLN2 intelectin 2
IVD isovaleryl-CoA dehydrogenase
KCNH2 potassium channel, voltage gated eag related subfamily H, member 2
KCNQ2 potassium channel, voltage gated KQT-like subfamily Q, member 2
KIAA1549 KIAA1549
KIF14 kinesin family member 14
KIR2DL4 killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 4
KIR3DL1 killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 1
KIT v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog
KMT2A lysine (K)-specific methyltransferase 2A
KRAS Kirsten rat sarcoma viral oncogene homolog
KRT9 keratin 9, type I
LDLR low density lipoprotein receptor
LETM1 leucine zipper-EF-hand containing transmembrane protein 1
LIPH lipase, member H
LMBR1 limb development membrane protein 1
LMNB1 lamin B1
LPL lipoprotein lipase
MAGT1 magnesium transporter 1
MAP2K4 mitogen-activated protein kinase kinase 4
MBD5 methyl-CpG binding domain protein 5
MBP myelin basic protein
MCPH1 microcephalin 1
MDC1 mediator of DNA-damage checkpoint 1
MECOM MDS1 and EVI1 complex locus
MECP2 methyl CpG binding protein 2
MED12 mediator complex subunit 12
MID1 midline 1
MIR155 microRNA 155
MIR99A microRNA 99a
MLH1 mutL homolog 1
MLLT3 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
MLLT4 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4
MLLT6 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6
MPZ myelin protein zero
MSH2 mutS homolog 2
MSH6 mutS homolog 6
MST1 macrophage stimulating 1
MUC3A mucin 3A, cell surface associated
MUC3B mucin 3B, cell surface associated
MYB v-myb avian myeloblastosis viral oncogene homolog
MYC v-myc avian myelocytomatosis viral oncogene homolog
MYH9 myosin, heavy chain 9, non-muscle
MYO15A myosin XVA
MYT1L myelin transcription factor 1-like
NAIP NLR family, apoptosis inhibitory protein
NDE1 nudE neurodevelopment protein 1
NDNF neuron-derived neurotrophic factor
NDRG1 N-myc downstream regulated 1
NEDD1 neural precursor cell expressed, developmentally down-regulated 1
NEK2 NIMA-related kinase 2
NFKB2 nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100)
NME1 NME/NM23 nucleoside diphosphate kinase 1
NME2 NME/NM23 nucleoside diphosphate kinase 2
NOTCH1 notch 1
NOTCH3 notch 3
NPHP1 nephronophthisis 1 (juvenile)
NPHS1 nephrosis 1, congenital, Finnish type (nephrin)
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin)
OCA2 oculocutaneous albinism II
OCRL oculocerebrorenal syndrome of Lowe
OTX2 orthodenticle homeobox 2
PAFAH1B1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)
PAH phenylalanine hydroxylase
PARK2 parkin RBR E3 ubiquitin protein ligase
PARK7 parkinson protein 7
PARVA parvin, alpha
PARVB parvin, beta
PARVG parvin, gamma
PAX6 paired box 6
PCDH11X protocadherin 11 X-linked
PCDH11Y protocadherin 11 Y-linked
PCDH15 protocadherin-related 15
PCNT pericentrin
PHOX2B paired-like homeobox 2b
PIM1 Pim-1 proto-oncogene, serine/threonine kinase
PITX2 paired-like homeodomain 2
PITX3 paired-like homeodomain 3
PKD1 polycystic kidney disease 1 (autosomal dominant)
PKD2 polycystic kidney disease 2 (autosomal dominant)
PLAU plasminogen activator, urokinase
PLK1 polo-like kinase 1
PLK2 polo-like kinase 2
PLK4 polo-like kinase 4
PLP1 proteolipid protein 1
PML promyelocytic leukemia
PMP22 peripheral myelin protein 22
PQBP1 polyglutamine binding protein 1
PRDM7 PR domain containing 7
PRDM9 PR domain containing 9
PRNP prion protein
PROS1 protein S (alpha)
PRSS1 protease, serine, 1 (trypsin 1)
PTK2B protein tyrosine kinase 2 beta
PXDN peroxidasin
RAN RAN, member RAS oncogene family
REG3G regenerating islet-derived 3 gamma
RPS6KA3 ribosomal protein S6 kinase, 90kDa, polypeptide 3
RUNX1 runt-related transcription factor 1
RUNX2 runt-related transcription factor 2
SASS6 spindle assembly 6 homolog (C. elegans)
SCA20 spinocerebellar ataxia 20
SCN2A sodium channel, voltage gated, type II alpha subunit
SCN3A sodium channel, voltage gated, type III alpha subunit
SEPT9 septin 9
SHH sonic hedgehog
SHMT2 serine hydroxymethyltransferase 2 (mitochondrial)
SHOX short stature homeobox
SIX1 SIX homeobox 1
SIX6 SIX homeobox 6
SLC26A4 solute carrier family 26 (anion exchanger), member 4
SLC3A1 solute carrier family 3 (amino acid transporter heavy chain), member 1
SLC4A1 solute carrier family 4 (anion exchanger), member 1 (Diego blood group)
SLC5A8 solute carrier family 5 (sodium/monocarboxylate cotransporter), member 8
SLC6A8 solute carrier family 6 (neurotransmitter transporter), member 8
SLIT3 slit homolog 3 (Drosophila)
SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
SMC1A structural maintenance of chromosomes 1A
SMN1 survival of motor neuron 1, telomeric
SNCA synuclein, alpha (non A4 component of amyloid precursor)
SOX3 SRY (sex determining region Y)-box 3
SOX5 SRY (sex determining region Y)-box 5
SOX9 SRY (sex determining region Y)-box 9
SPAST spastin
SPICE1 spindle and centriole associated protein 1
SPINK7 serine peptidase inhibitor, Kazal type 7 (putative)
SPP1 secreted phosphoprotein 1
SS18 synovial sarcoma translocation, chromosome 18
SS18L1 synovial sarcoma translocation gene on chromosome 18-like 1
STAG2 stromal antigen 2
STAT5A signal transducer and activator of transcription 5A
STIL SCL/TAL1 interrupting locus
STK11 serine/threonine kinase 11
STK38 serine/threonine kinase 38
SURF1 surfeit 1
SUV39H2 suppressor of variegation 3-9 homolog 2 (Drosophila)
TACC3 transforming, acidic coiled-coil containing protein 3
TBK1 TANK-binding kinase 1
TBX2 T-box 2
TBX5 T-box 5
TERF1 telomeric repeat binding factor (NIMA-interacting) 1
TNFRSF11A tumor necrosis factor receptor superfamily, member 11a, NFKB activator
TNFRSF25 tumor necrosis factor receptor superfamily, member 25
TNXA tenascin XA (pseudogene)
TNXB tenascin XB
TP53 tumor protein p53
TP73 tumor protein p73
TRPC2 transient receptor potential cation channel, subfamily C, member 2, pseudogene
TTK TTK protein kinase
TYMP thymidine phosphorylase
UBE3A ubiquitin protein ligase E3A
USP33 ubiquitin specific peptidase 33
VHL von Hippel-Lindau tumor suppressor, E3 ubiquitin protein ligase
WNT5A wingless-type MMTV integration site family, member 5A
XIAP X-linked inhibitor of apoptosis, E3 ubiquitin protein ligase
XIST X inactive specific transcript (non-protein coding)
XPO1 exportin 1
YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon
ZEB1 zinc finger E-box binding homeobox 1
ZNF469 zinc finger protein 469