environment Gene Set

Dataset GeneRIF Biological Term Annotations
Category structural or functional annotations
Type biological term
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Genes

408 genes co-occuring with the biological term environment in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.

Symbol Name
A2M alpha-2-macroglobulin
ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1
ABCB1 ATP-binding cassette, sub-family B (MDR/TAP), member 1
ABCG2 ATP-binding cassette, sub-family G (WHITE), member 2 (Junior blood group)
ACE angiotensin I converting enzyme
ACO1 aconitase 1, soluble
ACPP acid phosphatase, prostate
ACTN1 actinin, alpha 1
ADA adenosine deaminase
ADAM17 ADAM metallopeptidase domain 17
ADAM33 ADAM metallopeptidase domain 33
ADIPOQ adiponectin, C1Q and collagen domain containing
ADORA2A adenosine A2a receptor
ADRA1D adrenoceptor alpha 1D
ADRA2B adrenoceptor alpha 2B
ADRBK1 adrenergic, beta, receptor kinase 1
AGRP agouti related neuropeptide
AHCY adenosylhomocysteinase
AICDA activation-induced cytidine deaminase
AKT1 v-akt murine thymoma viral oncogene homolog 1
ALPP alkaline phosphatase, placental
ANG angiogenin, ribonuclease, RNase A family, 5
APC adenomatous polyposis coli
APOA5 apolipoprotein A-V
APOE apolipoprotein E
APP amyloid beta (A4) precursor protein
AQP1 aquaporin 1 (Colton blood group)
ARG1 arginase 1
ARHGEF5 Rho guanine nucleotide exchange factor (GEF) 5
ATOH1 atonal homolog 1 (Drosophila)
ATP2C1 ATPase, Ca++ transporting, type 2C, member 1
AXL AXL receptor tyrosine kinase
BAD BCL2-associated agonist of cell death
BAX BCL2-associated X protein
BCAP31 B-cell receptor-associated protein 31
BDNF brain-derived neurotrophic factor
BLVRA biliverdin reductase A
BMP2 bone morphogenetic protein 2
BMP7 bone morphogenetic protein 7
BOK BCL2-related ovarian killer
BRAF B-Raf proto-oncogene, serine/threonine kinase
BRCA1 breast cancer 1, early onset
C1QBP complement component 1, q subcomponent binding protein
C3 complement component 3
C5AR2 complement component 5a receptor 2
CA12 carbonic anhydrase XII
CA2 carbonic anhydrase II
CALM1 calmodulin 1 (phosphorylase kinase, delta)
CAMP cathelicidin antimicrobial peptide
CASR calcium-sensing receptor
CBS cystathionine-beta-synthase
CCKAR cholecystokinin A receptor
CCL11 chemokine (C-C motif) ligand 11
CCL17 chemokine (C-C motif) ligand 17
CCL26 chemokine (C-C motif) ligand 26
CCNA2 cyclin A2
CCND1 cyclin D1
CCNE1 cyclin E1
CCR3 chemokine (C-C motif) receptor 3
CD14 CD14 molecule
CD200 CD200 molecule
CD200R1 CD200 receptor 1
CD209 CD209 molecule
CD226 CD226 molecule
CD274 CD274 molecule
CD4 CD4 molecule
CD63 CD63 molecule
CD74 CD74 molecule, major histocompatibility complex, class II invariant chain
CD8A CD8a molecule
CD9 CD9 molecule
CDC25A cell division cycle 25A
CDH13 cadherin 13
CDKN1B cyclin-dependent kinase inhibitor 1B (p27, Kip1)
CDKN2A cyclin-dependent kinase inhibitor 2A
CEACAM1 carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)
CEBPB CCAAT/enhancer binding protein (C/EBP), beta
CES1 carboxylesterase 1
CFH complement factor H
CFTR cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)
CHGA chromogranin A
CHGB chromogranin B
CHRNA5 cholinergic receptor, nicotinic, alpha 5 (neuronal)
CLIC1 chloride intracellular channel 1
CNR1 cannabinoid receptor 1 (brain)
COL1A1 collagen, type I, alpha 1
COL4A1 collagen, type IV, alpha 1
COMT catechol-O-methyltransferase
CPA4 carboxypeptidase A4
CPA6 carboxypeptidase A6
CRHR1 corticotropin releasing hormone receptor 1
CRP C-reactive protein, pentraxin-related
CSF2 colony stimulating factor 2 (granulocyte-macrophage)
CSF3 colony stimulating factor 3 (granulocyte)
CSNK2A1 casein kinase 2, alpha 1 polypeptide
CST8 cystatin 8 (cystatin-related epididymal specific)
CSTB cystatin B (stefin B)
CTGF connective tissue growth factor
CTLA4 cytotoxic T-lymphocyte-associated protein 4
CTSB cathepsin B
CTSD cathepsin D
CTSL cathepsin L
CXCL12 chemokine (C-X-C motif) ligand 12
CXCL8 chemokine (C-X-C motif) ligand 8
CYGB cytoglobin
CYP11A1 cytochrome P450, family 11, subfamily A, polypeptide 1
CYP27A1 cytochrome P450, family 27, subfamily A, polypeptide 1
CYP2C9 cytochrome P450, family 2, subfamily C, polypeptide 9
DCN decorin
DDIT3 DNA-damage-inducible transcript 3
DDIT4 DNA-damage-inducible transcript 4
DEFA5 defensin, alpha 5, Paneth cell-specific
DFFB DNA fragmentation factor, 40kDa, beta polypeptide (caspase-activated DNase)
DMD dystrophin
DMPK dystrophia myotonica-protein kinase
DRD2 dopamine receptor D2
DRD4 dopamine receptor D4
DSG1 desmoglein 1
EBAG9 estrogen receptor binding site associated, antigen, 9
EGF epidermal growth factor
EGR2 early growth response 2
EIF4G1 eukaryotic translation initiation factor 4 gamma, 1
ELANE elastase, neutrophil expressed
ELAVL1 ELAV like RNA binding protein 1
EPAS1 endothelial PAS domain protein 1
EPHX1 epoxide hydrolase 1, microsomal (xenobiotic)
ERBB2 erb-b2 receptor tyrosine kinase 2
ERBB4 erb-b2 receptor tyrosine kinase 4
ERCC5 excision repair cross-complementation group 5
ESR1 estrogen receptor 1
ETF1 eukaryotic translation termination factor 1
EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit
F11 coagulation factor XI
F13A1 coagulation factor XIII, A1 polypeptide
FABP1 fatty acid binding protein 1, liver
FBLN7 fibulin 7
FCAR Fc fragment of IgA receptor
FCGR3A Fc fragment of IgG, low affinity IIIa, receptor (CD16a)
FERMT3 fermitin family member 3
FGFR3 fibroblast growth factor receptor 3
FKBP5 FK506 binding protein 5
FLT1 fms-related tyrosine kinase 1
FMO1 flavin containing monooxygenase 1
FOXP3 forkhead box P3
FTO fat mass and obesity associated
GAD1 glutamate decarboxylase 1 (brain, 67kDa)
GAD2 glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)
GADD45A growth arrest and DNA-damage-inducible, alpha
GAL galanin/GMAP prepropeptide
GAS6 growth arrest-specific 6
GGT1 gamma-glutamyltransferase 1
GLRA1 glycine receptor, alpha 1
GLUD2 glutamate dehydrogenase 2
GNB3 guanine nucleotide binding protein (G protein), beta polypeptide 3
GNPTG N-acetylglucosamine-1-phosphate transferase, gamma subunit
GPD2 glycerol-3-phosphate dehydrogenase 2 (mitochondrial)
GPR65 G protein-coupled receptor 65
GPR68 G protein-coupled receptor 68
GPX4 glutathione peroxidase 4
GRIA1 glutamate receptor, ionotropic, AMPA 1
GRIN1 glutamate receptor, ionotropic, N-methyl D-aspartate 1
HBE1 hemoglobin, epsilon 1
HBEGF heparin-binding EGF-like growth factor
HFE hemochromatosis
HGF hepatocyte growth factor (hepapoietin A; scatter factor)
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)
HIST1H1B histone cluster 1, H1b
HLA-DRA major histocompatibility complex, class II, DR alpha
HLA-DRB1 major histocompatibility complex, class II, DR beta 1
HLA-DRB4 major histocompatibility complex, class II, DR beta 4
HLA-G major histocompatibility complex, class I, G
HMCN1 hemicentin 1
HMOX1 heme oxygenase 1
HNF1A HNF1 homeobox A
HP haptoglobin
HRH4 histamine receptor H4
HSD11B1 hydroxysteroid (11-beta) dehydrogenase 1
HSD11B2 hydroxysteroid (11-beta) dehydrogenase 2
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1
HSPA4 heat shock 70kDa protein 4
HTR2A 5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled
HYOU1 hypoxia up-regulated 1
IAPP islet amyloid polypeptide
ICAM1 intercellular adhesion molecule 1
IDO1 indoleamine 2,3-dioxygenase 1
IFNA1 interferon, alpha 1
IFNG interferon, gamma
IGF1 insulin-like growth factor 1 (somatomedin C)
IGF1R insulin-like growth factor 1 receptor
IGFBP1 insulin-like growth factor binding protein 1
IGFBP3 insulin-like growth factor binding protein 3
IL10 interleukin 10
IL15 interleukin 15
IL17A interleukin 17A
IL18 interleukin 18
IL1A interleukin 1, alpha
IL1B interleukin 1, beta
IL1R1 interleukin 1 receptor, type I
IL22 interleukin 22
IL6 interleukin 6
IL7 interleukin 7
IMPACT impact RWD domain protein
INS insulin
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)
ITGA2B integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41)
ITGA3 integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)
ITGA4 integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)
ITGAL integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)
ITGB3 integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)
ITGB4 integrin, beta 4
ITPR1 inositol 1,4,5-trisphosphate receptor, type 1
JAK2 Janus kinase 2
JUND jun D proto-oncogene
KCNH2 potassium channel, voltage gated eag related subfamily H, member 2
KCNJ10 potassium channel, inwardly rectifying subfamily J, member 10
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1
KLF13 Kruppel-like factor 13
KLF5 Kruppel-like factor 5 (intestinal)
LAG3 lymphocyte-activation gene 3
LCAT lecithin-cholesterol acyltransferase
LCN2 lipocalin 2
LEP leptin
LGALS1 lectin, galactoside-binding, soluble, 1
LILRB4 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 4
LPIN1 lipin 1
LRIG1 leucine-rich repeats and immunoglobulin-like domains 1
LRP1B low density lipoprotein receptor-related protein 1B
LYN LYN proto-oncogene, Src family tyrosine kinase
LYZ lysozyme
MAOA monoamine oxidase A
MAP2K4 mitogen-activated protein kinase kinase 4
MAP3K5 mitogen-activated protein kinase kinase kinase 5
MAPK1 mitogen-activated protein kinase 1
MAPK14 mitogen-activated protein kinase 14
MAPK3 mitogen-activated protein kinase 3
MAPKAPK2 mitogen-activated protein kinase-activated protein kinase 2
MAPT microtubule-associated protein tau
MBOAT4 membrane bound O-acyltransferase domain containing 4
MC4R melanocortin 4 receptor
MCL1 myeloid cell leukemia 1
MDC1 mediator of DNA-damage checkpoint 1
MEFV Mediterranean fever
MERTK MER proto-oncogene, tyrosine kinase
MGAT1 mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
MGST1 microsomal glutathione S-transferase 1
MIF macrophage migration inhibitory factor (glycosylation-inhibiting factor)
MIR15A microRNA 15a
MIR181C microRNA 181c
MIR20A microRNA 20a
MIR23A microRNA 23a
MIR27B microRNA 27b
MIR302A microRNA 302a
MIR449A microRNA 449a
MMP14 matrix metallopeptidase 14 (membrane-inserted)
MMP2 matrix metallopeptidase 2
MMP9 matrix metallopeptidase 9
MPO myeloperoxidase
MSH2 mutS homolog 2
MSTN myostatin
MTA1 metastasis associated 1
MTOR mechanistic target of rapamycin (serine/threonine kinase)
MUC7 mucin 7, secreted
MUL1 mitochondrial E3 ubiquitin protein ligase 1
MYO1C myosin IC
MYO7A myosin VIIA
NAMPT nicotinamide phosphoribosyltransferase
NCAM1 neural cell adhesion molecule 1
NCR1 natural cytotoxicity triggering receptor 1
NF1 neurofibromin 1
NFE2L2 nuclear factor, erythroid 2-like 2
NFKB1 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1
NGB neuroglobin
NHLRC1 NHL repeat containing E3 ubiquitin protein ligase 1
NLRP3 NLR family, pyrin domain containing 3
NOD1 nucleotide-binding oligomerization domain containing 1
NOS1 nitric oxide synthase 1 (neuronal)
NOV nephroblastoma overexpressed
NPSA novel prostate-specific antigen
NR1I2 nuclear receptor subfamily 1, group I, member 2
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)
NRG1 neuregulin 1
OGG1 8-oxoguanine DNA glycosylase
OLR1 oxidized low density lipoprotein (lectin-like) receptor 1
OSM oncostatin M
OXTR oxytocin receptor
P2RX3 purinergic receptor P2X, ligand gated ion channel, 3
PAG1 phosphoprotein membrane anchor with glycosphingolipid microdomains 1
PARK7 parkinson protein 7
PGR progesterone receptor
PHB prohibitin
PI3 peptidase inhibitor 3, skin-derived
PI4K2A phosphatidylinositol 4-kinase type 2 alpha
PLAU plasminogen activator, urokinase
PLD1 phospholipase D1, phosphatidylcholine-specific
PLG plasminogen
PLXNB1 plexin B1
PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1
PON1 paraoxonase 1
POU5F1 POU class 5 homeobox 1
PPARG peroxisome proliferator-activated receptor gamma
PPARGC1A peroxisome proliferator-activated receptor gamma, coactivator 1 alpha
PPID peptidylprolyl isomerase D
PPP1R15A protein phosphatase 1, regulatory subunit 15A
PPP5C protein phosphatase 5, catalytic subunit
PRKCA protein kinase C, alpha
PRKCZ protein kinase C, zeta
PRL prolactin
PRNP prion protein
PTBP1 polypyrimidine tract binding protein 1
PTEN phosphatase and tensin homolog
PTGDR prostaglandin D2 receptor (DP)
PTGES prostaglandin E synthase
PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)
PTP4A1 protein tyrosine phosphatase type IVA, member 1
PTPN11 protein tyrosine phosphatase, non-receptor type 11
PVR poliovirus receptor
RAD51 RAD51 recombinase
RELA v-rel avian reticuloendotheliosis viral oncogene homolog A
RET ret proto-oncogene
RGS5 regulator of G-protein signaling 5
RHOA ras homolog family member A
RNF8 ring finger protein 8, E3 ubiquitin protein ligase
ROCK1 Rho-associated, coiled-coil containing protein kinase 1
RUNX1 runt-related transcription factor 1
SAA1 serum amyloid A1
SACK1H scaffolding CK1 anchoring protein H
SASS6 spindle assembly 6 homolog (C. elegans)
SCGB3A2 secretoglobin, family 3A, member 2
SDC1 syndecan 1
SEMA3B sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B
SENP7 SUMO1/sentrin specific peptidase 7
SERPINB9 serpin peptidase inhibitor, clade B (ovalbumin), member 9
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1
SERPINF2 serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2
SERPINH1 serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)
SFTPA1 surfactant protein A1
SGCA sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein)
SGPL1 sphingosine-1-phosphate lyase 1
SHANK3 SH3 and multiple ankyrin repeat domains 3
SKP2 S-phase kinase-associated protein 2, E3 ubiquitin protein ligase
SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1
SLC6A3 solute carrier family 6 (neurotransmitter transporter), member 3
SLC6A4 solute carrier family 6 (neurotransmitter transporter), member 4
SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11
SMAD2 SMAD family member 2
SNAP23 synaptosomal-associated protein, 23kDa
SNCA synuclein, alpha (non A4 component of amyloid precursor)
SNRPE small nuclear ribonucleoprotein polypeptide E
SOD1 superoxide dismutase 1, soluble
SOX17 SRY (sex determining region Y)-box 17
SOX2 SRY (sex determining region Y)-box 2
SOX9 SRY (sex determining region Y)-box 9
SRC SRC proto-oncogene, non-receptor tyrosine kinase
ST14 suppression of tumorigenicity 14 (colon carcinoma)
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor)
STAT4 signal transducer and activator of transcription 4
STAT5A signal transducer and activator of transcription 5A
STATH statherin
STAU1 staufen double-stranded RNA binding protein 1
TCAP titin-cap
TERT telomerase reverse transcriptase
TF transferrin
TFPI2 tissue factor pathway inhibitor 2
TGFB1 transforming growth factor, beta 1
TGFB3 transforming growth factor, beta 3
TGM2 transglutaminase 2
THBS1 thrombospondin 1
TIMP1 TIMP metallopeptidase inhibitor 1
TIMP3 TIMP metallopeptidase inhibitor 3
TLN1 talin 1
TLR1 toll-like receptor 1
TLR2 toll-like receptor 2
TLR3 toll-like receptor 3
TLR4 toll-like receptor 4
TM4SF5 transmembrane 4 L six family member 5
TMBIM6 transmembrane BAX inhibitor motif containing 6
TNF tumor necrosis factor
TNFRSF13B tumor necrosis factor receptor superfamily, member 13B
TNFRSF1B tumor necrosis factor receptor superfamily, member 1B
TNFRSF8 tumor necrosis factor receptor superfamily, member 8
TNFSF11 tumor necrosis factor (ligand) superfamily, member 11
TNFSF12 tumor necrosis factor (ligand) superfamily, member 12
TNFSF13 tumor necrosis factor (ligand) superfamily, member 13
TNFSF13B tumor necrosis factor (ligand) superfamily, member 13b
TNFSF14 tumor necrosis factor (ligand) superfamily, member 14
TP53 tumor protein p53
TPH1 tryptophan hydroxylase 1
TPH2 tryptophan hydroxylase 2
TRB T cell receptor beta locus
TRIM28 tripartite motif containing 28
TRPC7 transient receptor potential cation channel, subfamily C, member 7
TSC1 tuberous sclerosis 1
TSC2 tuberous sclerosis 2
TSLP thymic stromal lymphopoietin
TSPYL2 TSPY-like 2
TTN titin
UBD ubiquitin D
UCP2 uncoupling protein 2 (mitochondrial, proton carrier)
VCAM1 vascular cell adhesion molecule 1
VEGFA vascular endothelial growth factor A
VEGFC vascular endothelial growth factor C
VIM vimentin
VWF von Willebrand factor
WNT3A wingless-type MMTV integration site family, member 3A
XRCC3 X-ray repair complementing defective repair in Chinese hamster cells 3
ZNF217 zinc finger protein 217
ZNF350 zinc finger protein 350
ZNF827 zinc finger protein 827