foci Gene Set

Dataset GeneRIF Biological Term Annotations
Category structural or functional annotations
Type biological term
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Genes

205 genes co-occuring with the biological term foci in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.

Symbol Name
ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase
ALK anaplastic lymphoma receptor tyrosine kinase
APC adenomatous polyposis coli
AQP4 aquaporin 4
ASF1B anti-silencing function 1B histone chaperone
ATAD5 ATPase family, AAA domain containing 5
ATM ATM serine/threonine kinase
ATMIN ATM interactor
ATR ATR serine/threonine kinase
ATRIP ATR interacting protein
ATXN2 ataxin 2
BACH2 BTB and CNC homology 1, basic leucine zipper transcription factor 2
BARD1 BRCA1 associated RING domain 1
BAX BCL2-associated X protein
BCL2 B-cell CLL/lymphoma 2
BCLAF1 BCL2-associated transcription factor 1
BEAN1 brain expressed, associated with NEDD4, 1
BLM Bloom syndrome, RecQ helicase-like
BRAF B-Raf proto-oncogene, serine/threonine kinase
BRCA1 breast cancer 1, early onset
BRCA2 breast cancer 2, early onset
BRCC3 BRCA1/BRCA2-containing complex, subunit 3
BRD4 bromodomain containing 4
C10ORF2 chromosome 10 open reading frame 2
C9ORF72 chromosome 9 open reading frame 72
CAMP cathelicidin antimicrobial peptide
CASP3 caspase 3, apoptosis-related cysteine peptidase
CASP8 caspase 8, apoptosis-related cysteine peptidase
CASP8AP2 caspase 8 associated protein 2
CAV1 caveolin 1, caveolae protein, 22kDa
CCL19 chemokine (C-C motif) ligand 19
CCL21 chemokine (C-C motif) ligand 21
CD44 CD44 molecule (Indian blood group)
CD83 CD83 molecule
CDH1 cadherin 1, type 1, E-cadherin (epithelial)
CDX2 caudal type homeobox 2
CHEK1 checkpoint kinase 1
COIL coilin
CRISP3 cysteine-rich secretory protein 3
CRKL v-crk avian sarcoma virus CT10 oncogene homolog-like
CSNK2A1 casein kinase 2, alpha 1 polypeptide
CTCF CCCTC-binding factor (zinc finger protein)
CUL3 cullin 3
CXCL13 chemokine (C-X-C motif) ligand 13
CYGB cytoglobin
DCLRE1C DNA cross-link repair 1C
DCP1A decapping mRNA 1A
DCP2 decapping mRNA 2
DEFB4A defensin, beta 4A
DEPDC5 DEP domain containing 5
DGCR8 DGCR8 microprocessor complex subunit
DHX9 DEAH (Asp-Glu-Ala-His) box helicase 9
DMC1 DNA meiotic recombinase 1
DNAJB1 DnaJ (Hsp40) homolog, subfamily B, member 1
E2F1 E2F transcription factor 1
EGFR epidermal growth factor receptor
EIF3E eukaryotic translation initiation factor 3, subunit E
ELAVL1 ELAV like RNA binding protein 1
EP300 E1A binding protein p300
ERCC1 excision repair cross-complementation group 1
ERCC6 excision repair cross-complementation group 6
ERG v-ets avian erythroblastosis virus E26 oncogene homolog
ERH enhancer of rudimentary homolog (Drosophila)
ESR1 estrogen receptor 1
FAM175A family with sequence similarity 175, member A
FAN1 FANCD2/FANCI-associated nuclease 1
FANCD2 Fanconi anemia, complementation group D2
FLG filaggrin
FOXO3 forkhead box O3
FRS2 fibroblast growth factor receptor substrate 2
GATA1 GATA binding protein 1 (globin transcription factor 1)
GJA1 gap junction protein, alpha 1, 43kDa
GNAS GNAS complex locus
H2AFX H2A histone family, member X
HCFC1 host cell factor C1
HDAC4 histone deacetylase 4
HERC2 HECT and RLD domain containing E3 ubiquitin protein ligase 2
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)
HMGA1 high mobility group AT-hook 1
HMGA2 high mobility group AT-hook 2
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1
HPSE heparanase
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1
HSPA8 heat shock 70kDa protein 8
IFI16 interferon, gamma-inducible protein 16
IGF2 insulin-like growth factor 2
IGF2BP3 insulin-like growth factor 2 mRNA binding protein 3
IL17A interleukin 17A
IL21 interleukin 21
IL23A interleukin 23, alpha subunit p19
KLF5 Kruppel-like factor 5 (intestinal)
KRAS Kirsten rat sarcoma viral oncogene homolog
KRT19 keratin 19, type I
LEP leptin
LSM1 LSM1, U6 small nuclear RNA associated
LSM2 LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)
LSM3 LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
LSM4 LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
LSM5 LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
LSM6 LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
LSM7 LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)
MAPK1 mitogen-activated protein kinase 1
MAPK14 mitogen-activated protein kinase 14
MBD1 methyl-CpG binding domain protein 1
MBNL1 muscleblind-like splicing regulator 1
MCM2 minichromosome maintenance complex component 2
MCM3AP minichromosome maintenance complex component 3 associated protein
MDC1 mediator of DNA-damage checkpoint 1
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase
MFN2 mitofusin 2
MIF4GD MIF4G domain containing
MLH1 mutL homolog 1
MMP2 matrix metallopeptidase 2
MMP21 matrix metallopeptidase 21
MMP7 matrix metallopeptidase 7
MRE11A MRE11 meiotic recombination 11 homolog A (S. cerevisiae)
MSN moesin
MUC1 mucin 1, cell surface associated
MUC2 mucin 2, oligomeric mucus/gel-forming
MUC5B mucin 5B, oligomeric mucus/gel-forming
MYB v-myb avian myeloblastosis viral oncogene homolog
MYC v-myc avian myelocytomatosis viral oncogene homolog
MYD88 myeloid differentiation primary response 88
NCOA2 nuclear receptor coactivator 2
NCOR2 nuclear receptor corepressor 2
NFATC1 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1
NR5A1 nuclear receptor subfamily 5, group A, member 1
NUTM1 NUT midline carcinoma, family member 1
PALB2 partner and localizer of BRCA2
PARP1 poly (ADP-ribose) polymerase 1
PCNA proliferating cell nuclear antigen
PGR progesterone receptor
PIM2 Pim-2 proto-oncogene, serine/threonine kinase
PLD2 phospholipase D2
PML promyelocytic leukemia
POLH polymerase (DNA directed), eta
POLI polymerase (DNA directed) iota
POLK polymerase (DNA directed) kappa
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa
PPARGC1A peroxisome proliferator-activated receptor gamma, coactivator 1 alpha
PPP1R14B protein phosphatase 1, regulatory (inhibitor) subunit 14B
PPP6C protein phosphatase 6, catalytic subunit
PRKDC protein kinase, DNA-activated, catalytic polypeptide
PSMD6 proteasome (prosome, macropain) 26S subunit, non-ATPase, 6
PTEN phosphatase and tensin homolog
PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)
PTP4A3 protein tyrosine phosphatase type IVA, member 3
RAD17 RAD17 homolog (S. pombe)
RAD18 RAD18 E3 ubiquitin protein ligase
RAD51 RAD51 recombinase
RAD51AP1 RAD51 associated protein 1
RAD9A RAD9 homolog A (S. pombe)
RB1 retinoblastoma 1
RBBP8 retinoblastoma binding protein 8
RET ret proto-oncogene
REV1 REV1, polymerase (DNA directed)
RNF168 ring finger protein 168, E3 ubiquitin protein ligase
RNF8 ring finger protein 8, E3 ubiquitin protein ligase
RPA1 replication protein A1, 70kDa
RPGR retinitis pigmentosa GTPase regulator
RPGRIP1 retinitis pigmentosa GTPase regulator interacting protein 1
RUVBL1 RuvB-like AAA ATPase 1
RUVBL2 RuvB-like AAA ATPase 2
SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1
SLC5A8 solute carrier family 5 (sodium/monocarboxylate cotransporter), member 8
SLX4 SLX4 structure-specific endonuclease subunit
SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1
SNAI1 snail family zinc finger 1
SNAI2 snail family zinc finger 2
SPIDR scaffolding protein involved in DNA repair
SQSTM1 sequestosome 1
SRSF2 serine/arginine-rich splicing factor 2
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor)
STAU1 staufen double-stranded RNA binding protein 1
TBX2 T-box 2
TERF2 telomeric repeat binding factor 2
TERT telomerase reverse transcriptase
TFAM transcription factor A, mitochondrial
TFRC transferrin receptor
TGFB2 transforming growth factor, beta 2
THOC1 THO complex 1
TIMP3 TIMP metallopeptidase inhibitor 3
TOR1B torsin family 1, member B (torsin B)
TP53 tumor protein p53
TP53BP1 tumor protein p53 binding protein 1
TRAIP TRAF interacting protein
TREX2 three prime repair exonuclease 2
TRPV1 transient receptor potential cation channel, subfamily V, member 1
TWIST1 twist family bHLH transcription factor 1
UBE2N ubiquitin-conjugating enzyme E2N
UIMC1 ubiquitin interaction motif containing 1
UNG uracil-DNA glycosylase
USP16 ubiquitin specific peptidase 16
USP26 ubiquitin specific peptidase 26
UTRN utrophin
VRK1 vaccinia related kinase 1
WT1 Wilms tumor 1
WT2 Wilms tumor 2
XRCC1 X-ray repair complementing defective repair in Chinese hamster cells 1
XRCC3 X-ray repair complementing defective repair in Chinese hamster cells 3
XRCC5 X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)
XRCC6 X-ray repair complementing defective repair in Chinese hamster cells 6
XRN1 5'-3' exoribonuclease 1
YY1 YY1 transcription factor
ZEB2 zinc finger E-box binding homeobox 2