genotyping Gene Set

Dataset GeneRIF Biological Term Annotations
Category structural or functional annotations
Type biological term
Description An assay in which variation in the genome is analysed (Experimental Factor Ontology, EFO_0000750)
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Genes

220 genes co-occuring with the biological term genotyping in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.

Symbol Name
ABCB1 ATP-binding cassette, sub-family B (MDR/TAP), member 1
ABCB11 ATP-binding cassette, sub-family B (MDR/TAP), member 11
ABCB4 ATP-binding cassette, sub-family B (MDR/TAP), member 4
ABCC11 ATP-binding cassette, sub-family C (CFTR/MRP), member 11
ABCC2 ATP-binding cassette, sub-family C (CFTR/MRP), member 2
ABO ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase)
ACE angiotensin I converting enzyme
ADH1B alcohol dehydrogenase 1B (class I), beta polypeptide
ADRB1 adrenoceptor beta 1
AHRR aryl-hydrocarbon receptor repressor
ALDH2 aldehyde dehydrogenase 2 family (mitochondrial)
ALK anaplastic lymphoma receptor tyrosine kinase
ALOX5 arachidonate 5-lipoxygenase
ALOX5AP arachidonate 5-lipoxygenase-activating protein
AMELX amelogenin, X-linked
ANKK1 ankyrin repeat and kinase domain containing 1
APOE apolipoprotein E
APOL1 apolipoprotein L, 1
ARMS2 age-related maculopathy susceptibility 2
ART4 ADP-ribosyltransferase 4 (Dombrock blood group)
ATIC 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase
ATM ATM serine/threonine kinase
ATP5H ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d
ATXN2 ataxin 2
BCL2 B-cell CLL/lymphoma 2
BDKRB2 bradykinin receptor B2
BDNF brain-derived neurotrophic factor
BRAF B-Raf proto-oncogene, serine/threonine kinase
C1QTNF3 C1q and tumor necrosis factor related protein 3
C9ORF72 chromosome 9 open reading frame 72
CACNA1A calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
CALR calreticulin
CCND1 cyclin D1
CCR2 chemokine (C-C motif) receptor 2
CCR5 chemokine (C-C motif) receptor 5 (gene/pseudogene)
CD14 CD14 molecule
CD28 CD28 molecule
CDKN1C cyclin-dependent kinase inhibitor 1C (p57, Kip2)
CES1 carboxylesterase 1
CFH complement factor H
CFTR cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)
CHEK2 checkpoint kinase 2
CHRNA4 cholinergic receptor, nicotinic, alpha 4 (neuronal)
CHRNE cholinergic receptor, nicotinic, epsilon (muscle)
CNOT3 CCR4-NOT transcription complex, subunit 3
CNR1 cannabinoid receptor 1 (brain)
COL1A1 collagen, type I, alpha 1
COMT catechol-O-methyltransferase
CTLA4 cytotoxic T-lymphocyte-associated protein 4
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa
CYP1A1 cytochrome P450, family 1, subfamily A, polypeptide 1
CYP1A2 cytochrome P450, family 1, subfamily A, polypeptide 2
CYP21A2 cytochrome P450, family 21, subfamily A, polypeptide 2
CYP2B6 cytochrome P450, family 2, subfamily B, polypeptide 6
CYP2C19 cytochrome P450, family 2, subfamily C, polypeptide 19
CYP2C9 cytochrome P450, family 2, subfamily C, polypeptide 9
CYP2D6 cytochrome P450, family 2, subfamily D, polypeptide 6
CYP3A cytochrome P450, family 3, subfamily A
CYP3A4 cytochrome P450, family 3, subfamily A, polypeptide 4
CYP3A5 cytochrome P450, family 3, subfamily A, polypeptide 5
DGCR2 DiGeorge syndrome critical region gene 2
DHFR dihydrofolate reductase
DNAH8 dynein, axonemal, heavy chain 8
DNASE1L1 deoxyribonuclease I-like 1
DNASE1L2 deoxyribonuclease I-like 2
DNASE1L3 deoxyribonuclease I-like 3
DRD2 dopamine receptor D2
DRD4 dopamine receptor D4
EGFR epidermal growth factor receptor
ERBB2 erb-b2 receptor tyrosine kinase 2
ERBB3 erb-b2 receptor tyrosine kinase 3
ESR1 estrogen receptor 1
EVI5 ecotropic viral integration site 5
F8 coagulation factor VIII, procoagulant component
FAM69A family with sequence similarity 69, member A
FCGR3B Fc fragment of IgG, low affinity IIIb, receptor (CD16b)
FGFR3 fibroblast growth factor receptor 3
FLG filaggrin
FN1 fibronectin 1
FOXC1 forkhead box C1
FSCN2 fascin actin-bundling protein 2, retinal
FTL ferritin, light polypeptide
FTO fat mass and obesity associated
FUT3 fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)
FZD4 frizzled class receptor 4
GABRA1 gamma-aminobutyric acid (GABA) A receptor, alpha 1
GABRA2 gamma-aminobutyric acid (GABA) A receptor, alpha 2
GABRB2 gamma-aminobutyric acid (GABA) A receptor, beta 2
GFI1 growth factor independent 1 transcription repressor
GGH gamma-glutamyl hydrolase (conjugase, folylpolygammaglutamyl hydrolase)
GH1 growth hormone 1
GHR growth hormone receptor
GJA5 gap junction protein, alpha 5, 40kDa
GJB2 gap junction protein, beta 2, 26kDa
GLRA1 glycine receptor, alpha 1
GNA11 guanine nucleotide binding protein (G protein), alpha 11 (Gq class)
GNAQ guanine nucleotide binding protein (G protein), q polypeptide
GNB3 guanine nucleotide binding protein (G protein), beta polypeptide 3
GRIK2 glutamate receptor, ionotropic, kainate 2
GSTM1 glutathione S-transferase mu 1
GSTP1 glutathione S-transferase pi 1
HABP2 hyaluronan binding protein 2
HAMP hepcidin antimicrobial peptide
HCP5 HLA complex P5 (non-protein coding)
HFE hemochromatosis
HFE2 hemochromatosis type 2 (juvenile)
HLA-B major histocompatibility complex, class I, B
HLA-C major histocompatibility complex, class I, C
HLA-DQA1 major histocompatibility complex, class II, DQ alpha 1
HLA-DQB1 major histocompatibility complex, class II, DQ beta 1
HLA-DRA major histocompatibility complex, class II, DR alpha
HLA-DRB1 major histocompatibility complex, class II, DR beta 1
HMGA2 high mobility group AT-hook 2
HMHB1 histocompatibility (minor) HB-1
HRAS Harvey rat sarcoma viral oncogene homolog
HSD11B2 hydroxysteroid (11-beta) dehydrogenase 2
HSPA1B heat shock 70kDa protein 1B
HSPA1L heat shock 70kDa protein 1-like
IFNL3 interferon, lambda 3
IGF1 insulin-like growth factor 1 (somatomedin C)
IL10 interleukin 10
IL13 interleukin 13
IL1B interleukin 1, beta
IL2 interleukin 2
IL21 interleukin 21
IL4 interleukin 4
IL6 interleukin 6
IL6R interleukin 6 receptor
IRS1 insulin receptor substrate 1
ITGB3 integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)
ITGB4 integrin, beta 4
JPH3 junctophilin 3
KCNH2 potassium channel, voltage gated eag related subfamily H, member 2
KCNJ11 potassium channel, inwardly rectifying subfamily J, member 11
KCTD2 potassium channel tetramerization domain containing 2
KEL Kell blood group, metallo-endopeptidase
KIF6 kinesin family member 6
KIR3DL1 killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 1
KIR3DS1 killer cell immunoglobulin-like receptor, three domains, short cytoplasmic tail, 1
KIT v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog
KRAS Kirsten rat sarcoma viral oncogene homolog
LCT lactase
LDLR low density lipoprotein receptor
LINGO1 leucine rich repeat and Ig domain containing 1
LIPC lipase, hepatic
LPL lipoprotein lipase
MATN1 matrilin 1, cartilage matrix protein
MC4R melanocortin 4 receptor
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase
MEFV Mediterranean fever
MKS1 Meckel syndrome, type 1
MMP1 matrix metallopeptidase 1
MPO myeloperoxidase
MTHFR methylenetetrahydrofolate reductase (NAD(P)H)
MYO9B myosin IXB
NAT2 N-acetyltransferase 2 (arylamine N-acetyltransferase)
NCOA3 nuclear receptor coactivator 3
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase
NOD2 nucleotide-binding oligomerization domain containing 2
OPRM1 opioid receptor, mu 1
P2RX7 purinergic receptor P2X, ligand gated ion channel, 7
PAX6 paired box 6
PDGFRA platelet-derived growth factor receptor, alpha polypeptide
PIK3CA phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha
PLA2R1 phospholipase A2 receptor 1, 180kDa
PLCD1 phospholipase C, delta 1
PON1 paraoxonase 1
PON2 paraoxonase 2
PPARG peroxisome proliferator-activated receptor gamma
PPARGC1A peroxisome proliferator-activated receptor gamma, coactivator 1 alpha
PRNP prion protein
PROC protein C (inactivator of coagulation factors Va and VIIIa)
PROM1 prominin 1
PROS1 protein S (alpha)
PRPH2 peripherin 2 (retinal degeneration, slow)
PSCA prostate stem cell antigen
PSORS1C1 psoriasis susceptibility 1 candidate 1
PTEN phosphatase and tensin homolog
PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)
PTPN22 protein tyrosine phosphatase, non-receptor type 22 (lymphoid)
RHD Rh blood group, D antigen
RPL5 ribosomal protein L5
SCN10A sodium channel, voltage gated, type X alpha subunit
SCN5A sodium channel, voltage gated, type V alpha subunit
SERPINA1 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1
SERPINA4 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 4
SERPINC1 serpin peptidase inhibitor, clade C (antithrombin), member 1
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2
SERPING1 serpin peptidase inhibitor, clade G (C1 inhibitor), member 1
SH2B3 SH2B adaptor protein 3
SLC14A1 solute carrier family 14 (urea transporter), member 1 (Kidd blood group)
SLC29A1 solute carrier family 29 (equilibrative nucleoside transporter), member 1
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3
SLC40A1 solute carrier family 40 (iron-regulated transporter), member 1
SLC4A1 solute carrier family 4 (anion exchanger), member 1 (Diego blood group)
SLC6A3 solute carrier family 6 (neurotransmitter transporter), member 3
SLC6A4 solute carrier family 6 (neurotransmitter transporter), member 4
SLCO1B1 solute carrier organic anion transporter family, member 1B1
SPAST spastin
TBXA2R thromboxane A2 receptor
TCF7L2 transcription factor 7-like 2 (T-cell specific, HMG-box)
TFPI2 tissue factor pathway inhibitor 2
TFR2 transferrin receptor 2
TGFB1 transforming growth factor, beta 1
TMEM67 transmembrane protein 67
TNF tumor necrosis factor
TP53 tumor protein p53
TPMT thiopurine S-methyltransferase
TRPV5 transient receptor potential cation channel, subfamily V, member 5
TTR transthyretin
TUSC3 tumor suppressor candidate 3
TYMS thymidylate synthetase
UBASH3A ubiquitin associated and SH3 domain containing A
UGT1A1 UDP glucuronosyltransferase 1 family, polypeptide A1
UGT1A6 UDP glucuronosyltransferase 1 family, polypeptide A6
UGT1A7 UDP glucuronosyltransferase 1 family, polypeptide A7
UGT2B4 UDP glucuronosyltransferase 2 family, polypeptide B4
USP9Y ubiquitin specific peptidase 9, Y-linked
VDR vitamin D (1,25- dihydroxyvitamin D3) receptor
VKORC1 vitamin K epoxide reductase complex, subunit 1