improved Gene Set

Dataset GeneRIF Biological Term Annotations
Category structural or functional annotations
Type biological term
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Genes

369 genes co-occuring with the biological term improved in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.

Symbol Name
ABCC3 ATP-binding cassette, sub-family C (CFTR/MRP), member 3
ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase
ACAD9 acyl-CoA dehydrogenase family, member 9
ACADM acyl-CoA dehydrogenase, C-4 to C-12 straight chain
ACE angiotensin I converting enzyme
ACE2 angiotensin I converting enzyme 2
ACHE acetylcholinesterase (Yt blood group)
ACTN3 actinin, alpha 3 (gene/pseudogene)
ADGRE2 adhesion G protein-coupled receptor E2
ADIPOQ adiponectin, C1Q and collagen domain containing
ADM adrenomedullin
ADORA1 adenosine A1 receptor
ADRB1 adrenoceptor beta 1
ADRB2 adrenoceptor beta 2, surface
AFP alpha-fetoprotein
AGER advanced glycosylation end product-specific receptor
AGT angiotensinogen (serpin peptidase inhibitor, clade A, member 8)
AGXT2 alanine--glyoxylate aminotransferase 2
AKT1 v-akt murine thymoma viral oncogene homolog 1
ALCAM activated leukocyte cell adhesion molecule
ALDOB aldolase B, fructose-bisphosphate
ALK anaplastic lymphoma receptor tyrosine kinase
APC adenomatous polyposis coli
APLN apelin
APOA1 apolipoprotein A-I
APOA5 apolipoprotein A-V
APOC1 apolipoprotein C-I
APOE apolipoprotein E
APP amyloid beta (A4) precursor protein
AQP1 aquaporin 1 (Colton blood group)
AQP4 aquaporin 4
ARSA arylsulfatase A
ASCL1 achaete-scute family bHLH transcription factor 1
ATP13A2 ATPase type 13A2
ATP2A2 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
ATP2C1 ATPase, Ca++ transporting, type 2C, member 1
BAG1 BCL2-associated athanogene
BAX BCL2-associated X protein
BCL2 B-cell CLL/lymphoma 2
BCL2A1 BCL2-related protein A1
BCL2L1 BCL2-like 1
BCL2L11 BCL2-like 11 (apoptosis facilitator)
BGLAP bone gamma-carboxyglutamate (gla) protein
BID BH3 interacting domain death agonist
BIRC5 baculoviral IAP repeat containing 5
BMI1 BMI1 proto-oncogene, polycomb ring finger
BMP2 bone morphogenetic protein 2
BRAF B-Raf proto-oncogene, serine/threonine kinase
BRCA1 breast cancer 1, early onset
BRCA2 breast cancer 2, early onset
C3 complement component 3
C4A complement component 4A (Rodgers blood group)
C4B complement component 4B (Chido blood group)
CA9 carbonic anhydrase IX
CAMP cathelicidin antimicrobial peptide
CAT catalase
CAV1 caveolin 1, caveolae protein, 22kDa
CCL2 chemokine (C-C motif) ligand 2
CCR5 chemokine (C-C motif) receptor 5 (gene/pseudogene)
CCR7 chemokine (C-C motif) receptor 7
CD163 CD163 molecule
CD274 CD274 molecule
CD44 CD44 molecule (Indian blood group)
CDH1 cadherin 1, type 1, E-cadherin (epithelial)
CDK5 cyclin-dependent kinase 5
CDK6 cyclin-dependent kinase 6
CDKN1A cyclin-dependent kinase inhibitor 1A (p21, Cip1)
CDKN1B cyclin-dependent kinase inhibitor 1B (p27, Kip1)
CDKN2A cyclin-dependent kinase inhibitor 2A
CDKN2B cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4)
CEACAM5 carcinoembryonic antigen-related cell adhesion molecule 5
CEBPA CCAAT/enhancer binding protein (C/EBP), alpha
CFH complement factor H
CFTR cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)
CHRM1 cholinergic receptor, muscarinic 1
CHRNA1 cholinergic receptor, nicotinic, alpha 1 (muscle)
CHRNA7 cholinergic receptor, nicotinic, alpha 7 (neuronal)
CLEC10A C-type lectin domain family 10, member A
CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit
CMPK1 cytidine monophosphate (UMP-CMP) kinase 1, cytosolic
CNTNAP2 contactin associated protein-like 2
COL4A3 collagen, type IV, alpha 3 (Goodpasture antigen)
COMT catechol-O-methyltransferase
CRP C-reactive protein, pentraxin-related
CRYAA crystallin, alpha A
CRYAB crystallin, alpha B
CSK c-src tyrosine kinase
CST3 cystatin C
CTGF connective tissue growth factor
CTLA4 cytotoxic T-lymphocyte-associated protein 4
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa
CTTN cortactin
CX3CR1 chemokine (C-X3-C motif) receptor 1
CXCL10 chemokine (C-X-C motif) ligand 10
CXCL12 chemokine (C-X-C motif) ligand 12
CXCR1 chemokine (C-X-C motif) receptor 1
CXCR2 chemokine (C-X-C motif) receptor 2
CXCR4 chemokine (C-X-C motif) receptor 4
CYB5A cytochrome b5 type A (microsomal)
CYP11B2 cytochrome P450, family 11, subfamily B, polypeptide 2
CYP2B6 cytochrome P450, family 2, subfamily B, polypeptide 6
CYP2E1 cytochrome P450, family 2, subfamily E, polypeptide 1
CYP2J2 cytochrome P450, family 2, subfamily J, polypeptide 2
CYP3A4 cytochrome P450, family 3, subfamily A, polypeptide 4
DCK deoxycytidine kinase
DCN decorin
DPP4 dipeptidyl-peptidase 4
DRD2 dopamine receptor D2
DRD4 dopamine receptor D4
E2F1 E2F transcription factor 1
EDN1 endothelin 1
EGF epidermal growth factor
EGFR epidermal growth factor receptor
EHMT2 euchromatic histone-lysine N-methyltransferase 2
EIF4A3 eukaryotic translation initiation factor 4A3
ELANE elastase, neutrophil expressed
ENG endoglin
EPHA4 EPH receptor A4
ERBB2 erb-b2 receptor tyrosine kinase 2
ERBB4 erb-b2 receptor tyrosine kinase 4
ERCC1 excision repair cross-complementation group 1
ERG v-ets avian erythroblastosis virus E26 oncogene homolog
ESR1 estrogen receptor 1
ESR2 estrogen receptor 2 (ER beta)
ETV1 ets variant 1
EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit
F2R coagulation factor II (thrombin) receptor
F2RL1 coagulation factor II (thrombin) receptor-like 1
F5 coagulation factor V (proaccelerin, labile factor)
F7 coagulation factor VII (serum prothrombin conversion accelerator)
FADD Fas (TNFRSF6)-associated via death domain
FBLN5 fibulin 5
FCGR3A Fc fragment of IgG, low affinity IIIa, receptor (CD16a)
FCN2 ficolin (collagen/fibrinogen domain containing lectin) 2
FGB fibrinogen beta chain
FGF2 fibroblast growth factor 2 (basic)
FGF23 fibroblast growth factor 23
FGF7 fibroblast growth factor 7
FGF8 fibroblast growth factor 8 (androgen-induced)
FGFR3 fibroblast growth factor receptor 3
FIGF c-fos induced growth factor (vascular endothelial growth factor D)
FKBP5 FK506 binding protein 5
FLT3 fms-related tyrosine kinase 3
FMR1 fragile X mental retardation 1
FOLH1 folate hydrolase (prostate-specific membrane antigen) 1
FOLR1 folate receptor 1 (adult)
FOXA1 forkhead box A1
FOXE1 forkhead box E1
FOXO3 forkhead box O3
FOXP1 forkhead box P1
FOXP2 forkhead box P2
FOXP3 forkhead box P3
FST follistatin
FTO fat mass and obesity associated
FUT2 fucosyltransferase 2 (secretor status included)
FUT3 fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)
GALNT9 polypeptide N-acetylgalactosaminyltransferase 9
GATA3 GATA binding protein 3
GCH1 GTP cyclohydrolase 1
GCKR glucokinase (hexokinase 4) regulator
GDF15 growth differentiation factor 15
GFAP glial fibrillary acidic protein
GH2 growth hormone 2
GHR growth hormone receptor
GHRL ghrelin/obestatin prepropeptide
GJB2 gap junction protein, beta 2, 26kDa
GLA galactosidase, alpha
GPC3 glypican 3
GPR119 G protein-coupled receptor 119
GRB2 growth factor receptor-bound protein 2
GRM4 glutamate receptor, metabotropic 4
GRN granulin
GSTT1 glutathione S-transferase theta 1
GYS1 glycogen synthase 1 (muscle)
GZMB granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)
H3F3A H3 histone, family 3A
HAVCR2 hepatitis A virus cellular receptor 2
HDAC8 histone deacetylase 8
HDGF hepatoma-derived growth factor
HGF hepatocyte growth factor (hepapoietin A; scatter factor)
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)
HLA-A major histocompatibility complex, class I, A
HLA-DMB major histocompatibility complex, class II, DM beta
HLA-E major histocompatibility complex, class I, E
HLA-G major histocompatibility complex, class I, G
HMGB1 high mobility group box 1
HMHB1 histocompatibility (minor) HB-1
HMOX1 heme oxygenase 1
HNF1B HNF1 homeobox B
HOXA7 homeobox A7
HP haptoglobin
HPX hemopexin
HSPA1A heat shock 70kDa protein 1A
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)
HSPB1 heat shock 27kDa protein 1
HTR2C 5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled
IAPP islet amyloid polypeptide
ICAM1 intercellular adhesion molecule 1
ID1 inhibitor of DNA binding 1, dominant negative helix-loop-helix protein
IDH1 isocitrate dehydrogenase 1 (NADP+), soluble
IFNG interferon, gamma
IFNL3 interferon, lambda 3
IGF1 insulin-like growth factor 1 (somatomedin C)
IGF1R insulin-like growth factor 1 receptor
IL12A interleukin 12A
IL12B interleukin 12B
IL15 interleukin 15
IL15RA interleukin 15 receptor, alpha
IL18 interleukin 18
IL1B interleukin 1, beta
IL21 interleukin 21
IL24 interleukin 24
IL6 interleukin 6
IL6R interleukin 6 receptor
INS insulin
IRS1 insulin receptor substrate 1
ITPA inosine triphosphatase (nucleoside triphosphate pyrophosphatase)
JAK2 Janus kinase 2
KCNH2 potassium channel, voltage gated eag related subfamily H, member 2
KIR2DL1 killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 1
KIR2DS5 killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 5
KISS1R KISS1 receptor
KLK3 kallikrein-related peptidase 3
KLLN killin, p53-regulated DNA replication inhibitor
KLRK1 killer cell lectin-like receptor subfamily K, member 1
KMT2E lysine (K)-specific methyltransferase 2E
KRAS Kirsten rat sarcoma viral oncogene homolog
L1CAM L1 cell adhesion molecule
LACRT lacritin
LEP leptin
LGR5 leucine-rich repeat containing G protein-coupled receptor 5
LMO2 LIM domain only 2 (rhombotin-like 1)
LOXL2 lysyl oxidase-like 2
LPA lipoprotein, Lp(a)
LPIN1 lipin 1
LRP1 low density lipoprotein receptor-related protein 1
LRRK2 leucine-rich repeat kinase 2
MBL2 mannose-binding lectin (protein C) 2, soluble
MC4R melanocortin 4 receptor
MEFV Mediterranean fever
MGEA5 meningioma expressed antigen 5 (hyaluronidase)
MGMT O-6-methylguanine-DNA methyltransferase
MICA MHC class I polypeptide-related sequence A
MIR10B microRNA 10b
MIR126 microRNA 126
MIR151A microRNA 151a
MKI67 marker of proliferation Ki-67
MLH1 mutL homolog 1
MMP1 matrix metallopeptidase 1
MMP7 matrix metallopeptidase 7
MPO myeloperoxidase
MSX2 msh homeobox 2
MTOR mechanistic target of rapamycin (serine/threonine kinase)
MUC5B mucin 5B, oligomeric mucus/gel-forming
NAMPT nicotinamide phosphoribosyltransferase
NANOG Nanog homeobox
NAPSA napsin A aspartic peptidase
NCOA3 nuclear receptor coactivator 3
NELL1 NEL-like 1 (chicken)
NF2 neurofibromin 2 (merlin)
NKX2-1 NK2 homeobox 1
NOS1 nitric oxide synthase 1 (neuronal)
NOS3 nitric oxide synthase 3 (endothelial cell)
NPAS2 neuronal PAS domain protein 2
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin)
NPPB natriuretic peptide B
NRG1 neuregulin 1
NTRK1 neurotrophic tyrosine kinase, receptor, type 1
OCLN occludin
OLIG2 oligodendrocyte lineage transcription factor 2
OPRM1 opioid receptor, mu 1
PARG poly (ADP-ribose) glycohydrolase
PARP1 poly (ADP-ribose) polymerase 1
PCA3 prostate cancer associated 3 (non-protein coding)
PDCD1 programmed cell death 1
PGR progesterone receptor
PIGR polymeric immunoglobulin receptor
PIK3CA phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha
PLCE1 phospholipase C, epsilon 1
PLP1 proteolipid protein 1
PNLIP pancreatic lipase
POLM polymerase (DNA directed), mu
POU5F1 POU class 5 homeobox 1
PPARD peroxisome proliferator-activated receptor delta
PPARG peroxisome proliferator-activated receptor gamma
PPARGC1A peroxisome proliferator-activated receptor gamma, coactivator 1 alpha
PPARGC1B peroxisome proliferator-activated receptor gamma, coactivator 1 beta
PPM1K protein phosphatase, Mg2+/Mn2+ dependent, 1K
PRKCB protein kinase C, beta
PSME3 proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki)
PTBP1 polypyrimidine tract binding protein 1
PTEN phosphatase and tensin homolog
PTGDS prostaglandin D2 synthase 21kDa (brain)
PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)
PTH parathyroid hormone
PTK2 protein tyrosine kinase 2
PTPN6 protein tyrosine phosphatase, non-receptor type 6
PTPRC protein tyrosine phosphatase, receptor type, C
PTRH2 peptidyl-tRNA hydrolase 2
RARRES2 retinoic acid receptor responder (tazarotene induced) 2
RASSF1 Ras association (RalGDS/AF-6) domain family member 1
RB1 retinoblastoma 1
RBP4 retinol binding protein 4, plasma
RCHY1 ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase
REG1B regenerating islet-derived 1 beta
REN renin
RNU1-4 RNA, U1 small nuclear 4
RRM2 ribonucleotide reductase M2
S100B S100 calcium binding protein B
S1PR1 sphingosine-1-phosphate receptor 1
SCGB1A1 secretoglobin, family 1A, member 1 (uteroglobin)
SCN5A sodium channel, voltage gated, type V alpha subunit
SCNN1A sodium channel, non voltage gated 1 alpha subunit
SCNN1D sodium channel, non voltage gated 1 delta subunit
SERPINA1 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1
SERPINF1 serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1
SET SET nuclear proto-oncogene
SEZ6L seizure related 6 homolog (mouse)-like
SFRP1 secreted frizzled-related protein 1
SFTPC surfactant protein C
SGK1 serum/glucocorticoid regulated kinase 1
SIRT1 sirtuin 1
SIRT2 sirtuin 2
SLC29A1 solute carrier family 29 (equilibrative nucleoside transporter), member 1
SLC6A4 solute carrier family 6 (neurotransmitter transporter), member 4
SLCO1B3 solute carrier organic anion transporter family, member 1B3
SNCA synuclein, alpha (non A4 component of amyloid precursor)
SNCAIP synuclein, alpha interacting protein
SOD1 superoxide dismutase 1, soluble
SOX2 SRY (sex determining region Y)-box 2
SPARCL1 SPARC-like 1 (hevin)
ST2 suppression of tumorigenicity 2
STEAP1 six transmembrane epithelial antigen of the prostate 1
STMN1 stathmin 1
SYCN syncollin
TBX21 T-box 21
TCL1A T-cell leukemia/lymphoma 1A
TERF1 telomeric repeat binding factor (NIMA-interacting) 1
TF transferrin
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)
TGFB2 transforming growth factor, beta 2
TH tyrosine hydroxylase
THRA thyroid hormone receptor, alpha
TKTL1 transketolase-like 1
TLR5 toll-like receptor 5
TMPRSS15 transmembrane protease, serine 15
TMPRSS2 transmembrane protease, serine 2
TNFRSF12A tumor necrosis factor receptor superfamily, member 12A
TNFRSF1B tumor necrosis factor receptor superfamily, member 1B
TNFSF10 tumor necrosis factor (ligand) superfamily, member 10
TNXB tenascin XB
TOP2A topoisomerase (DNA) II alpha 170kDa
TP53 tumor protein p53
TPM1 tropomyosin 1 (alpha)
TPMT thiopurine S-methyltransferase
TUBB3 tubulin, beta 3 class III
TYMS thymidylate synthetase
UCP3 uncoupling protein 3 (mitochondrial, proton carrier)
UPRT uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae)
VDR vitamin D (1,25- dihydroxyvitamin D3) receptor
VEGFA vascular endothelial growth factor A
VHL von Hippel-Lindau tumor suppressor, E3 ubiquitin protein ligase
WFDC2 WAP four-disulfide core domain 2
WT1 Wilms tumor 1
WWOX WW domain containing oxidoreductase
XIAP X-linked inhibitor of apoptosis, E3 ubiquitin protein ligase
XRCC3 X-ray repair complementing defective repair in Chinese hamster cells 3
YAP1 Yes-associated protein 1