indirect Gene Set

Dataset GeneRIF Biological Term Annotations
Category structural or functional annotations
Type biological term
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Genes

245 genes co-occuring with the biological term indirect in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.

Symbol Name
ABCG1 ATP-binding cassette, sub-family G (WHITE), member 1
ACTA1 actin, alpha 1, skeletal muscle
ACTA2 actin, alpha 2, smooth muscle, aorta
ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif, 1
ADIPOQ adiponectin, C1Q and collagen domain containing
ADRM1 adhesion regulating molecule 1
AGTR1 angiotensin II receptor, type 1
AHR aryl hydrocarbon receptor
AKT1 v-akt murine thymoma viral oncogene homolog 1
ALDH1A1 aldehyde dehydrogenase 1 family, member A1
AMH anti-Mullerian hormone
APBA1 amyloid beta (A4) precursor protein-binding, family A, member 1
APOH apolipoprotein H (beta-2-glycoprotein I)
APP amyloid beta (A4) precursor protein
AR androgen receptor
ARHGDIA Rho GDP dissociation inhibitor (GDI) alpha
AURKA aurora kinase A
BCCIP BRCA2 and CDKN1A interacting protein
BCHE butyrylcholinesterase
BDKRB1 bradykinin receptor B1
BDNF brain-derived neurotrophic factor
BIK BCL2-interacting killer (apoptosis-inducing)
BLVRA biliverdin reductase A
BMP4 bone morphogenetic protein 4
BRCA1 breast cancer 1, early onset
BSG basigin (Ok blood group)
CACNA1C calcium channel, voltage-dependent, L type, alpha 1C subunit
CAMP cathelicidin antimicrobial peptide
CBL Cbl proto-oncogene, E3 ubiquitin protein ligase
CCL2 chemokine (C-C motif) ligand 2
CCNA2 cyclin A2
CCND1 cyclin D1
CD38 CD38 molecule
CD4 CD4 molecule
CDC42 cell division cycle 42
CDCA2 cell division cycle associated 2
CDK1 cyclin-dependent kinase 1
CDK4 cyclin-dependent kinase 4
CDKN1A cyclin-dependent kinase inhibitor 1A (p21, Cip1)
CDKN2A cyclin-dependent kinase inhibitor 2A
CFTR cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)
COL1A1 collagen, type I, alpha 1
COL3A1 collagen, type III, alpha 1
COL9A2 collagen, type IX, alpha 2
COL9A3 collagen, type IX, alpha 3
CREB1 cAMP responsive element binding protein 1
CREBBP CREB binding protein
CRH corticotropin releasing hormone
CRYAB crystallin, alpha B
CSF2 colony stimulating factor 2 (granulocyte-macrophage)
CSF3 colony stimulating factor 3 (granulocyte)
CTH cystathionine gamma-lyase
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa
CXCL8 chemokine (C-X-C motif) ligand 8
DICER1 dicer 1, ribonuclease type III
DKK1 dickkopf WNT signaling pathway inhibitor 1
DKK2 dickkopf WNT signaling pathway inhibitor 2
DKK3 dickkopf WNT signaling pathway inhibitor 3
DNMT1 DNA (cytosine-5-)-methyltransferase 1
DUSP1 dual specificity phosphatase 1
E2F1 E2F transcription factor 1
E2F4 E2F transcription factor 4, p107/p130-binding
EFEMP1 EGF containing fibulin-like extracellular matrix protein 1
EGFR epidermal growth factor receptor
EIF2A eukaryotic translation initiation factor 2A, 65kDa
EIF5A eukaryotic translation initiation factor 5A
ELAVL1 ELAV like RNA binding protein 1
EPHB6 EPH receptor B6
EPOR erythropoietin receptor
ERBB2 erb-b2 receptor tyrosine kinase 2
ESR1 estrogen receptor 1
ESR2 estrogen receptor 2 (ER beta)
EWSR1 EWS RNA-binding protein 1
F2R coagulation factor II (thrombin) receptor
F3 coagulation factor III (thromboplastin, tissue factor)
F8 coagulation factor VIII, procoagulant component
F9 coagulation factor IX
FAS Fas cell surface death receptor
FCGRT Fc fragment of IgG, receptor, transporter, alpha
FGF2 fibroblast growth factor 2 (basic)
FGFR2 fibroblast growth factor receptor 2
FHL2 four and a half LIM domains 2
FKBP5 FK506 binding protein 5
FLT1 fms-related tyrosine kinase 1
FMR1 fragile X mental retardation 1
FNDC5 fibronectin type III domain containing 5
FOS FBJ murine osteosarcoma viral oncogene homolog
FOXP3 forkhead box P3
FUBP1 far upstream element (FUSE) binding protein 1
FURIN furin (paired basic amino acid cleaving enzyme)
FYN FYN proto-oncogene, Src family tyrosine kinase
GATA3 GATA binding protein 3
GCG glucagon
GHRL ghrelin/obestatin prepropeptide
GLP2R glucagon-like peptide 2 receptor
GNRHR gonadotropin-releasing hormone receptor
GSTM1 glutathione S-transferase mu 1
GSTT1 glutathione S-transferase theta 1
H19 H19, imprinted maternally expressed transcript (non-protein coding)
HDAC1 histone deacetylase 1
HGF hepatocyte growth factor (hepapoietin A; scatter factor)
HLA-DRB1 major histocompatibility complex, class II, DR beta 1
HLA-G major histocompatibility complex, class I, G
HMOX1 heme oxygenase 1
HNF4A hepatocyte nuclear factor 4, alpha
HTRA1 HtrA serine peptidase 1
HTRA3 HtrA serine peptidase 3
IFNG interferon, gamma
IGF2R insulin-like growth factor 2 receptor
IL17A interleukin 17A
IL1B interleukin 1, beta
IL2RA interleukin 2 receptor, alpha
IL6 interleukin 6
IL7 interleukin 7
INHBA inhibin, beta A
IRF4 interferon regulatory factor 4
IRF6 interferon regulatory factor 6
ITGB3 integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)
IVL involucrin
JAK2 Janus kinase 2
JUN jun proto-oncogene
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1
KITLG KIT ligand
KLRC1 killer cell lectin-like receptor subfamily C, member 1
KRTAP24-1 keratin associated protein 24-1
LATS2 large tumor suppressor kinase 2
LEP leptin
LEPR leptin receptor
LRG1 leucine-rich alpha-2-glycoprotein 1
MAPK1 mitogen-activated protein kinase 1
MAPK3 mitogen-activated protein kinase 3
MAPT microtubule-associated protein tau
MEF2A myocyte enhancer factor 2A
MET MET proto-oncogene, receptor tyrosine kinase
MIR140 microRNA 140
MIR150 microRNA 150
MIR190A microRNA 190a
MIR21 microRNA 21
MIR222 microRNA 222
MIR302A microRNA 302a
MIR33A microRNA 33a
MIR3940 microRNA 3940
MMP1 matrix metallopeptidase 1
MMP14 matrix metallopeptidase 14 (membrane-inserted)
MMP3 matrix metallopeptidase 3
MMP9 matrix metallopeptidase 9
MTDH metadherin
MYC v-myc avian myelocytomatosis viral oncogene homolog
MYCN v-myc avian myelocytomatosis viral oncogene neuroblastoma derived homolog
NCOA3 nuclear receptor coactivator 3
NDRG1 N-myc downstream regulated 1
NDUFAF1 NADH dehydrogenase (ubiquinone) complex I, assembly factor 1
NEDD8 neural precursor cell expressed, developmentally down-regulated 8
NF2 neurofibromin 2 (merlin)
NFKB1 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1
NOTCH1 notch 1
NR1I3 nuclear receptor subfamily 1, group I, member 3
NR2F2 nuclear receptor subfamily 2, group F, member 2
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)
NTF3 neurotrophin 3
OGG1 8-oxoguanine DNA glycosylase
OPA1 optic atrophy 1 (autosomal dominant)
OSBPL8 oxysterol binding protein-like 8
PAPPA pregnancy-associated plasma protein A, pappalysin 1
PAX5 paired box 5
PDCD4 programmed cell death 4 (neoplastic transformation inhibitor)
PEBP1 phosphatidylethanolamine binding protein 1
PGF placental growth factor
PGR progesterone receptor
PIGR polymeric immunoglobulin receptor
PIK3CA phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha
PLG plasminogen
PLXNB3 plexin B3
PML promyelocytic leukemia
POU2F3 POU class 2 homeobox 3
POU5F1 POU class 5 homeobox 1
PRKCI protein kinase C, iota
PRKDC protein kinase, DNA-activated, catalytic polypeptide
PRLR prolactin receptor
PSMG1 proteasome (prosome, macropain) assembly chaperone 1
PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)
PTHLH parathyroid hormone-like hormone
PTK2B protein tyrosine kinase 2 beta
RAC1 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)
RACGAP1 Rac GTPase activating protein 1
RAF1 Raf-1 proto-oncogene, serine/threonine kinase
RARA retinoic acid receptor, alpha
RB1 retinoblastoma 1
RBP2 retinol binding protein 2, cellular
RBPJ recombination signal binding protein for immunoglobulin kappa J region
RHOG ras homolog family member G
RNF14 ring finger protein 14
RPS6KB1 ribosomal protein S6 kinase, 70kDa, polypeptide 1
S100B S100 calcium binding protein B
SAFB scaffold attachment factor B
SCGB2A1 secretoglobin, family 2A, member 1
SEMA5A sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A
SERPINH1 serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)
SHC1 SHC (Src homology 2 domain containing) transforming protein 1
SHMT1 serine hydroxymethyltransferase 1 (soluble)
SIGMAR1 sigma non-opioid intracellular receptor 1
SIRT1 sirtuin 1
SLC12A4 solute carrier family 12 (potassium/chloride transporter), member 4
SLC12A5 solute carrier family 12 (potassium/chloride transporter), member 5
SLC12A6 solute carrier family 12 (potassium/chloride transporter), member 6
SLC12A7 solute carrier family 12 (potassium/chloride transporter), member 7
SLC22A1 solute carrier family 22 (organic cation transporter), member 1
SLC26A3 solute carrier family 26 (anion exchanger), member 3
SLC31A1 solute carrier family 31 (copper transporter), member 1
SLC6A3 solute carrier family 6 (neurotransmitter transporter), member 3
SLC7A1 solute carrier family 7 (cationic amino acid transporter, y+ system), member 1
SMAD6 SMAD family member 6
SMAD7 SMAD family member 7
SNCA synuclein, alpha (non A4 component of amyloid precursor)
SORL1 sortilin-related receptor, L(DLR class) A repeats containing
SPARC secreted protein, acidic, cysteine-rich (osteonectin)
SPINK5 serine peptidase inhibitor, Kazal type 5
SRC SRC proto-oncogene, non-receptor tyrosine kinase
SREBF1 sterol regulatory element binding transcription factor 1
SRF serum response factor (c-fos serum response element-binding transcription factor)
SRSF3 serine/arginine-rich splicing factor 3
STAT1 signal transducer and activator of transcription 1, 91kDa
STK16 serine/threonine kinase 16
STXBP1 syntaxin binding protein 1
TBX1 T-box 1
TBX2 T-box 2
TBX3 T-box 3
TERF1 telomeric repeat binding factor (NIMA-interacting) 1
TFPI2 tissue factor pathway inhibitor 2
TGFB1 transforming growth factor, beta 1
TLR4 toll-like receptor 4
TNF tumor necrosis factor
TNFRSF14 tumor necrosis factor receptor superfamily, member 14
TNFSF11 tumor necrosis factor (ligand) superfamily, member 11
TNFSF4 tumor necrosis factor (ligand) superfamily, member 4
TP53 tumor protein p53
TP63 tumor protein p63
TP73 tumor protein p73
TRPM2 transient receptor potential cation channel, subfamily M, member 2
UBA3 ubiquitin-like modifier activating enzyme 3
VDR vitamin D (1,25- dihydroxyvitamin D3) receptor
VEGFA vascular endothelial growth factor A
YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon
YY1 YY1 transcription factor
ZBTB7A zinc finger and BTB domain containing 7A