meniscus Gene Set

Dataset TISSUES Text-mining Tissue Protein Expression Evidence Scores
Category structural or functional annotations
Type tissue
Description A fibrous cartilage within a joint especially of the knee. (BRENDA Tissue and Enzyme Source Ontology, BTO_0001592)
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Genes

134 proteins co-occuring with the tissue meniscus in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset.

Symbol Name Standardized Value
ACAN aggrecan 2.22302
NOTCH1 notch 1 1.86875
ADAMTS5 ADAM metallopeptidase with thrombospondin type 1 motif, 5 1.63956
BGN biglycan 1.57209
PRG4 proteoglycan 4 1.55843
MMP13 matrix metallopeptidase 13 1.49867
ADAMTS3 ADAM metallopeptidase with thrombospondin type 1 motif, 3 1.43662
ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif, 4 1.35767
CILP2 cartilage intermediate layer protein 2 1.30208
HHAT hedgehog acyltransferase 1.29984
MMP1 matrix metallopeptidase 1 1.25413
MMP3 matrix metallopeptidase 3 1.2345
FMOD fibromodulin 1.2296
SCAF8 SR-related CTD-associated factor 8 1.21802
ANKH ANKH inorganic pyrophosphate transport regulator 1.20912
DCN decorin 1.20245
LAX1 lymphocyte transmembrane adaptor 1 1.1758
KRT86 keratin 86, type II 1.17491
LCTL lactase-like 1.08722
VCAN versican 1.08148
SOX9 SRY (sex determining region Y)-box 9 1.04401
CILP cartilage intermediate layer protein, nucleotide pyrophosphohydrolase 1.03127
COL2A1 collagen, type II, alpha 1 1.01287
PGRMC1 progesterone receptor membrane component 1 1.00807
COMP cartilage oligomeric matrix protein 1.00676
IGF1 insulin-like growth factor 1 (somatomedin C) 0.969388
FGF2 fibroblast growth factor 2 (basic) 0.92291
HLA-DPA1 major histocompatibility complex, class II, DP alpha 1 0.89562
RIMS3 regulating synaptic membrane exocytosis 3 0.862627
COL1A1 collagen, type I, alpha 1 0.83993
COL10A1 collagen, type X, alpha 1 0.823594
ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 0.821921
SETD1A SET domain containing 1A 0.815233
TGFB1 transforming growth factor, beta 1 0.803127
HGD homogentisate 1,2-dioxygenase 0.791044
MSLNL mesothelin-like 0.780232
ARHGEF11 Rho guanine nucleotide exchange factor (GEF) 11 0.767783
COL5A1 collagen, type V, alpha 1 0.761155
COL1A2 collagen, type I, alpha 2 0.752884
TIMP1 TIMP metallopeptidase inhibitor 1 0.733912
MMP2 matrix metallopeptidase 2 0.721166
COL18A1 collagen, type XVIII, alpha 1 0.696172
THBS4 thrombospondin 4 0.688817
GDF6 growth differentiation factor 6 0.676987
MMP25 matrix metallopeptidase 25 0.665182
TNF tumor necrosis factor 0.652994
C7ORF49 chromosome 7 open reading frame 49 0.652589
MRI1 methylthioribose-1-phosphate isomerase 1 0.648127
MMP9 matrix metallopeptidase 9 0.635572
IL1A interleukin 1, alpha 0.602892
NAA10 N(alpha)-acetyltransferase 10, NatA catalytic subunit 0.596058
IL1B interleukin 1, beta 0.586427
BIN2 bridging integrator 2 0.574416
FGF18 fibroblast growth factor 18 0.564833
SRY sex determining region Y 0.537416
SIK1 salt-inducible kinase 1 0.537416
MTF1 metal-regulatory transcription factor 1 0.522011
COL5A2 collagen, type V, alpha 2 0.51571
THUMPD1 THUMP domain containing 1 0.514924
COL6A2 collagen, type VI, alpha 2 0.510599
RGS10 regulator of G-protein signaling 10 0.510206
TSPO translocator protein (18kDa) 0.501965
PTGES prostaglandin E synthase 0.487106
BMP7 bone morphogenetic protein 7 0.483986
TAC1 tachykinin, precursor 1 0.470763
ENPP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 0.469211
CACNA1F calcium channel, voltage-dependent, L type, alpha 1F subunit 0.468436
COL6A3 collagen, type VI, alpha 3 0.464948
CALCA calcitonin-related polypeptide alpha 0.463013
CCL4L2 chemokine (C-C motif) ligand 4-like 2 0.461852
CDC7 cell division cycle 7 0.456828
CCL4L1 chemokine (C-C motif) ligand 4-like 1 0.456055
EPB41L1 erythrocyte membrane protein band 4.1-like 1 0.439507
TRIM47 tripartite motif containing 47 0.438356
CLCN6 chloride channel, voltage-sensitive 6 0.426109
MIA melanoma inhibitory activity 0.424963
WTIP Wilms tumor 1 interacting protein 0.42191
PLAU plasminogen activator, urokinase 0.42191
CCL3L1 chemokine (C-C motif) ligand 3-like 1 0.419623
LHB luteinizing hormone beta polypeptide 0.401007
PTGES3 prostaglandin E synthase 3 (cytosolic) 0.397222
CDC5L cell division cycle 5-like 0.396465
MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast) 0.389666
CD44 CD44 molecule (Indian blood group) 0.38665
ARHGEF16 Rho guanine nucleotide exchange factor (GEF) 16 0.38439
LUM lumican 0.383637
HBA1 hemoglobin, alpha 1 0.382508
LTBP3 latent transforming growth factor beta binding protein 3 0.380627
ADGRL4 adhesion G protein-coupled receptor L4 0.379123
TGFB3 transforming growth factor, beta 3 0.374243
SLC9A6 solute carrier family 9, subfamily A (NHE6, cation proton antiporter 6), member 6 0.370496
HBA2 hemoglobin, alpha 2 0.370121
LTBP2 latent transforming growth factor beta binding protein 2 0.36825
NBL1 neuroblastoma 1, DAN family BMP antagonist 0.36526
INHBA inhibin, beta A 0.350743
MMP14 matrix metallopeptidase 14 (membrane-inserted) 0.346668
LECT1 leukocyte cell derived chemotaxin 1 0.345928
KITLG KIT ligand 0.341126
KERA keratocan 0.33156
FGF7 fibroblast growth factor 7 0.32753
MED12 mediator complex subunit 12 0.318407
IHH indian hedgehog 0.31332
CYS1 cystin 1 0.308974
SDC3 syndecan 3 0.308251
TARS threonyl-tRNA synthetase 0.306083
NPS neuropeptide S 0.299242
METTL13 methyltransferase like 13 0.298524
FN1 fibronectin 1 0.296372
GDF5 growth differentiation factor 5 0.296013
GLB1 galactosidase, beta 1 0.291722
HAT1 histone acetyltransferase 1 0.291008
SETD2 SET domain containing 2 0.290652
F8 coagulation factor VIII, procoagulant component 0.289582
VEGFA vascular endothelial growth factor A 0.285671
BMP2 bone morphogenetic protein 2 0.274744
CTGF connective tissue growth factor 0.2723
MAZ MYC-associated zinc finger protein (purine-binding transcription factor) 0.266413
BHMT betaine--homocysteine S-methyltransferase 0.265038
TET2 tet methylcytosine dioxygenase 2 0.262304
IGF2 insulin-like growth factor 2 0.261964
TIMP2 TIMP metallopeptidase inhibitor 2 0.25457
TNC tenascin C 0.246124
TIMP3 TIMP metallopeptidase inhibitor 3 0.240216
CD34 CD34 molecule 0.239913
CXCL3 chemokine (C-X-C motif) ligand 3 0.235167
FGF1 fibroblast growth factor 1 (acidic) 0.230931
TNFAIP3 tumor necrosis factor, alpha-induced protein 3 0.226667
CXCL6 chemokine (C-X-C motif) ligand 6 0.225647
HGF hepatocyte growth factor (hepapoietin A; scatter factor) 0.221521
WDR20 WD repeat domain 20 0.219264
IL33 interleukin 33 0.218186
KCNK9 potassium channel, two pore domain subfamily K, member 9 0.217139
SLC12A3 solute carrier family 12 (sodium/chloride transporter), member 3 0.216933
PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) 0.214954