neoplasia Gene Set

Dataset GeneRIF Biological Term Annotations
Category structural or functional annotations
Type biological term
Description A benign or malignant tissue growth resulting from uncontrolled cell proliferation. Benign neoplastic cells resemble normal cells without exhibiting significant cytologic atypia, while malignant cells exhibit overt signs such as dysplastic features, atypical mitotic figures, necrosis, nuclear pleomorphism, and anaplasia. Representative examples of benign neoplasms include papillomas, cystadenomas, and lipomas; malignant neoplasms include carcinomas, sarcomas, lymphomas, and leukemias. (Experimental Factor Ontology, EFO_0000616)
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Genes

300 genes co-occuring with the biological term neoplasia in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.

Symbol Name
ABCA5 ATP-binding cassette, sub-family A (ABC1), member 5
ABCC4 ATP-binding cassette, sub-family C (CFTR/MRP), member 4
ADA adenosine deaminase
AIP aryl hydrocarbon receptor interacting protein
AKT1 v-akt murine thymoma viral oncogene homolog 1
ALDH1A1 aldehyde dehydrogenase 1 family, member A1
ALDH2 aldehyde dehydrogenase 2 family (mitochondrial)
ALDH3A1 aldehyde dehydrogenase 3 family, member A1
ALOX15 arachidonate 15-lipoxygenase
ALOX5AP arachidonate 5-lipoxygenase-activating protein
AMACR alpha-methylacyl-CoA racemase
AMHR2 anti-Mullerian hormone receptor, type II
ANXA1 annexin A1
ANXA2 annexin A2
APC adenomatous polyposis coli
APEX1 APEX nuclease (multifunctional DNA repair enzyme) 1
AR androgen receptor
ASCL2 achaete-scute family bHLH transcription factor 2
AURKA aurora kinase A
AXIN1 axin 1
BAP1 BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase)
BAX BCL2-associated X protein
BCL2 B-cell CLL/lymphoma 2
BIRC5 baculoviral IAP repeat containing 5
BRAF B-Raf proto-oncogene, serine/threonine kinase
BRCA1 breast cancer 1, early onset
CASR calcium-sensing receptor
CAV1 caveolin 1, caveolae protein, 22kDa
CCNA1 cyclin A1
CCND1 cyclin D1
CCR1 chemokine (C-C motif) receptor 1
CCR9 chemokine (C-C motif) receptor 9
CD247 CD247 molecule
CD274 CD274 molecule
CD44 CD44 molecule (Indian blood group)
CD74 CD74 molecule, major histocompatibility complex, class II invariant chain
CDH1 cadherin 1, type 1, E-cadherin (epithelial)
CDH17 cadherin 17, LI cadherin (liver-intestine)
CDKN1A cyclin-dependent kinase inhibitor 1A (p21, Cip1)
CDKN1B cyclin-dependent kinase inhibitor 1B (p27, Kip1)
CDKN1C cyclin-dependent kinase inhibitor 1C (p57, Kip2)
CDKN2A cyclin-dependent kinase inhibitor 2A
CDKN2C cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)
CDX2 caudal type homeobox 2
CFLAR CASP8 and FADD-like apoptosis regulator
CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7
CHGA chromogranin A
CLDN1 claudin 1
CLDN7 claudin 7
CLU clusterin
COL25A1 collagen, type XXV, alpha 1
COL4A6 collagen, type IV, alpha 6
CSF2 colony stimulating factor 2 (granulocyte-macrophage)
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa
CTNNBIP1 catenin, beta interacting protein 1
CYP1A1 cytochrome P450, family 1, subfamily A, polypeptide 1
CYP2D6 cytochrome P450, family 2, subfamily D, polypeptide 6
CYP2E1 cytochrome P450, family 2, subfamily E, polypeptide 1
DEFA1 defensin, alpha 1
DEFA3 defensin, alpha 3, neutrophil-specific
DKC1 dyskeratosis congenita 1, dyskerin
DKK1 dickkopf WNT signaling pathway inhibitor 1
DNM2 dynamin 2
DNMT3L DNA (cytosine-5-)-methyltransferase 3-like
DPYSL5 dihydropyrimidinase-like 5
DUSP6 dual specificity phosphatase 6
EEF1A2 eukaryotic translation elongation factor 1 alpha 2
EGFR epidermal growth factor receptor
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2
ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1
ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5
EPAS1 endothelial PAS domain protein 1
EPHA2 EPH receptor A2
EPHA4 EPH receptor A4
EPHX1 epoxide hydrolase 1, microsomal (xenobiotic)
ERBB2 erb-b2 receptor tyrosine kinase 2
ERBB3 erb-b2 receptor tyrosine kinase 3
ERG v-ets avian erythroblastosis virus E26 oncogene homolog
ESM1 endothelial cell-specific molecule 1
ESR1 estrogen receptor 1
ESR2 estrogen receptor 2 (ER beta)
ETV1 ets variant 1
EZR ezrin
FAS Fas cell surface death receptor
FGFR1 fibroblast growth factor receptor 1
FH fumarate hydratase
FN1 fibronectin 1
FOXN3 forkhead box N3
FSCN1 fascin actin-bundling protein 1
FTL ferritin, light polypeptide
FXYD5 FXYD domain containing ion transport regulator 5
FZD1 frizzled class receptor 1
GAST gastrin
GATA4 GATA binding protein 4
GATA5 GATA binding protein 5
GC group-specific component (vitamin D binding protein)
GCG glucagon
GHRH growth hormone releasing hormone
GRM1 glutamate receptor, metabotropic 1
GRN granulin
GSTA1 glutathione S-transferase alpha 1
GSTM1 glutathione S-transferase mu 1
GSTP1 glutathione S-transferase pi 1
GSTT1 glutathione S-transferase theta 1
HAVCR1 hepatitis A virus cellular receptor 1
HLA-DQB1 major histocompatibility complex, class II, DQ beta 1
HLA-DRB1 major histocompatibility complex, class II, DR beta 1
HRAS Harvey rat sarcoma viral oncogene homolog
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1
HSPB1 heat shock 27kDa protein 1
HSPD1 heat shock 60kDa protein 1 (chaperonin)
HTRA1 HtrA serine peptidase 1
IGF2BP1 insulin-like growth factor 2 mRNA binding protein 1
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2
IGF2BP3 insulin-like growth factor 2 mRNA binding protein 3
IGFBP1 insulin-like growth factor binding protein 1
IGFBP5 insulin-like growth factor binding protein 5
IL6 interleukin 6
INHBA inhibin, beta A
INHBB inhibin, beta B
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)
ITGB2 integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)
JAG1 jagged 1
JAK2 Janus kinase 2
JAZF1 JAZF zinc finger 1
JUN jun proto-oncogene
JUNB jun B proto-oncogene
KATNAL2 katanin p60 subunit A-like 2
KCNE2 potassium channel, voltage gated subfamily E regulatory beta subunit 2
KCNJ1 potassium channel, inwardly rectifying subfamily J, member 1
KIAA0226L KIAA0226-like
KIT v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog
KLK7 kallikrein-related peptidase 7
KRAS Kirsten rat sarcoma viral oncogene homolog
LAMB1 laminin, beta 1
LCN2 lipocalin 2
LGALS1 lectin, galactoside-binding, soluble, 1
LGALS9 lectin, galactoside-binding, soluble, 9
LMO4 LIM domain only 4
MED12 mediator complex subunit 12
MEN1 multiple endocrine neoplasia I
MFNG MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
MGMT O-6-methylguanine-DNA methyltransferase
MIF macrophage migration inhibitory factor (glycosylation-inhibiting factor)
MIR101-1 microRNA 101-1
MIR101-2 microRNA 101-2
MIR106B microRNA 106b
MIR10A microRNA 10a
MIR10B microRNA 10b
MIR137 microRNA 137
MIR17 microRNA 17
MIR182 microRNA 182
MIR20A microRNA 20a
MIR21 microRNA 21
MIR221 microRNA 221
MIR222 microRNA 222
MIR25 microRNA 25
MIR26A1 microRNA 26a-1
MIR27A microRNA 27a
MIR296 microRNA 296
MIR31 microRNA 31
MIR330 microRNA 330
MIR34A microRNA 34a
MIR519D microRNA 519d
MIR7-1 microRNA 7-1
MIR7-2 microRNA 7-2
MIR7-3 microRNA 7-3
MIR9-1 microRNA 9-1
MIR9-2 microRNA 9-2
MIR9-3 microRNA 9-3
MKI67 marker of proliferation Ki-67
MME membrane metallo-endopeptidase
MMP14 matrix metallopeptidase 14 (membrane-inserted)
MMP2 matrix metallopeptidase 2
MMP26 matrix metallopeptidase 26
MMP9 matrix metallopeptidase 9
MTAP methylthioadenosine phosphorylase
MTDH metadherin
MTHFR methylenetetrahydrofolate reductase (NAD(P)H)
MTR 5-methyltetrahydrofolate-homocysteine methyltransferase
MTRR 5-methyltetrahydrofolate-homocysteine methyltransferase reductase
MUC1 mucin 1, cell surface associated
MUC2 mucin 2, oligomeric mucus/gel-forming
MUC5AC mucin 5AC, oligomeric mucus/gel-forming
MUC6 mucin 6, oligomeric mucus/gel-forming
MYB v-myb avian myeloblastosis viral oncogene homolog
MYBL2 v-myb avian myeloblastosis viral oncogene homolog-like 2
MYC v-myc avian myelocytomatosis viral oncogene homolog
NES nestin
NKX3-1 NK3 homeobox 1
NME1 NME/NM23 nucleoside diphosphate kinase 1
NOS2 nitric oxide synthase 2, inducible
NOTCH1 notch 1
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin)
NQO1 NAD(P)H dehydrogenase, quinone 1
NR2C2 nuclear receptor subfamily 2, group C, member 2
NR4A1 nuclear receptor subfamily 4, group A, member 1
NR4A3 nuclear receptor subfamily 4, group A, member 3
NRAS neuroblastoma RAS viral (v-ras) oncogene homolog
NRP1 neuropilin 1
OLFM4 olfactomedin 4
OR51E2 olfactory receptor, family 51, subfamily E, member 2
PAX1 paired box 1
PAX2 paired box 2
PAX5 paired box 5
PAX8 paired box 8
PCA3 prostate cancer associated 3 (non-protein coding)
PDCD1 programmed cell death 1
PDPN podoplanin
PDX1 pancreatic and duodenal homeobox 1
PEAK1 pseudopodium-enriched atypical kinase 1
PHB prohibitin
PI4KB phosphatidylinositol 4-kinase, catalytic, beta
PIM1 Pim-1 proto-oncogene, serine/threonine kinase
PLAU plasminogen activator, urokinase
PLAUR plasminogen activator, urokinase receptor
PLK1 polo-like kinase 1
PNMA2 paraneoplastic Ma antigen 2
POU5F1 POU class 5 homeobox 1
PPARG peroxisome proliferator-activated receptor gamma
PPY pancreatic polypeptide
PRDM1 PR domain containing 1, with ZNF domain
PRLR prolactin receptor
PRMT5 protein arginine methyltransferase 5
PSCA prostate stem cell antigen
PTEN phosphatase and tensin homolog
PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)
PTOV1 prostate tumor overexpressed 1
PTPN11 protein tyrosine phosphatase, non-receptor type 11
RARA retinoic acid receptor, alpha
RASSF1 Ras association (RalGDS/AF-6) domain family member 1
RET ret proto-oncogene
RHOA ras homolog family member A
RHOB ras homolog family member B
RPA2 replication protein A2, 32kDa
RPS6 ribosomal protein S6
RXRA retinoid X receptor, alpha
S100P S100 calcium binding protein P
SCRIB scribbled planar cell polarity protein
SCTR secretin receptor
SDHA succinate dehydrogenase complex, subunit A, flavoprotein (Fp)
SDHB succinate dehydrogenase complex, subunit B, iron sulfur (Ip)
SDHC succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa
SDHD succinate dehydrogenase complex, subunit D, integral membrane protein
SEPT9 septin 9
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1
SERPINH1 serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)
SFRP2 secreted frizzled-related protein 2
SHH sonic hedgehog
SLC12A1 solute carrier family 12 (sodium/potassium/chloride transporter), member 1
SLC18A1 solute carrier family 18 (vesicular monoamine transporter), member 1
SLC18A2 solute carrier family 18 (vesicular monoamine transporter), member 2
SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1
SLC2A2 solute carrier family 2 (facilitated glucose transporter), member 2
SLC2A5 solute carrier family 2 (facilitated glucose/fructose transporter), member 5
SLC6A2 solute carrier family 6 (neurotransmitter transporter), member 2
SLC7A5 solute carrier family 7 (amino acid transporter light chain, L system), member 5
SLCO2A1 solute carrier organic anion transporter family, member 2A1
SLIT2 slit homolog 2 (Drosophila)
SMAD4 SMAD family member 4
SMOX spermine oxidase
SOCS3 suppressor of cytokine signaling 3
SOX1 SRY (sex determining region Y)-box 1
SOX11 SRY (sex determining region Y)-box 11
SOX2 SRY (sex determining region Y)-box 2
SPP1 secreted phosphoprotein 1
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor)
STEAP1 six transmembrane epithelial antigen of the prostate 1
STMN1 stathmin 1
SUZ12 SUZ12 polycomb repressive complex 2 subunit
TAP1 transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)
TAP2 transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)
TCF7L2 transcription factor 7-like 2 (T-cell specific, HMG-box)
TCL1A T-cell leukemia/lymphoma 1A
TERC telomerase RNA component
TERT telomerase reverse transcriptase
TGFB1 transforming growth factor, beta 1
TGFBR1 transforming growth factor, beta receptor 1
THRA thyroid hormone receptor, alpha
TIA1 TIA1 cytotoxic granule-associated RNA binding protein
TIMP4 TIMP metallopeptidase inhibitor 4
TK1 thymidine kinase 1, soluble
TKTL1 transketolase-like 1
TLR4 toll-like receptor 4
TLR5 toll-like receptor 5
TLR7 toll-like receptor 7
TLR9 toll-like receptor 9
TMEFF2 transmembrane protein with EGF-like and two follistatin-like domains 2
TMPRSS2 transmembrane protease, serine 2
TNF tumor necrosis factor
TNFSF13 tumor necrosis factor (ligand) superfamily, member 13
TP53 tumor protein p53
TP63 tumor protein p63
TPM3 tropomyosin 3
TYMP thymidine phosphorylase
VEGFA vascular endothelial growth factor A
VHL von Hippel-Lindau tumor suppressor, E3 ubiquitin protein ligase
WNT5A wingless-type MMTV integration site family, member 5A
WT1 Wilms tumor 1
ZNF582 zinc finger protein 582