network-forming collagen trimer Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A collagen trimer that forms networks. (Gene Ontology, GO_0098642)
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Genes

240 proteins co-occuring with the network-forming collagen trimer cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
FN1 fibronectin 1 1.03166
NID1 nidogen 1 0.829663
TNC tenascin C 0.702736
TGFB1 transforming growth factor, beta 1 0.677781
CD44 CD44 molecule (Indian blood group) 0.674088
COL10A1 collagen, type X, alpha 1 0.627868
NID2 nidogen 2 (osteonidogen) 0.572162
ACAN aggrecan 0.553284
SOX9 SRY (sex determining region Y)-box 9 0.506248
COL8A1 collagen, type VIII, alpha 1 0.501983
IHH indian hedgehog 0.498839
COL4A1 collagen, type IV, alpha 1 0.489529
COL8A2 collagen, type VIII, alpha 2 0.485794
MMP2 matrix metallopeptidase 2 0.484281
SEBOX SEBOX homeobox 0.471409
MMP9 matrix metallopeptidase 9 0.436368
LRRC17 leucine rich repeat containing 17 0.432519
COL4A3 collagen, type IV, alpha 3 (Goodpasture antigen) 0.420036
COL4A5 collagen, type IV, alpha 5 0.417685
COL4A4 collagen, type IV, alpha 4 0.381007
ALPL alkaline phosphatase, liver/bone/kidney 0.379949
ALPPL2 alkaline phosphatase, placental-like 2 0.373036
ALPP alkaline phosphatase, placental 0.372461
SPP1 secreted phosphoprotein 1 0.365381
COL4A2 collagen, type IV, alpha 2 0.361087
TIMP1 TIMP metallopeptidase inhibitor 1 0.355563
DCN decorin 0.33106
MMP13 matrix metallopeptidase 13 0.317643
COL2A1 collagen, type II, alpha 1 0.31755
THY1 Thy-1 cell surface antigen 0.307936
TGFB3 transforming growth factor, beta 3 0.306353
TIMP2 TIMP metallopeptidase inhibitor 2 0.29827
MMP1 matrix metallopeptidase 1 0.296508
RUNX2 runt-related transcription factor 2 0.290955
LSAMP limbic system-associated membrane protein 0.288829
LAMB2 laminin, beta 2 (laminin S) 0.28846
BMP7 bone morphogenetic protein 7 0.284124
CD34 CD34 molecule 0.265037
FGF2 fibroblast growth factor 2 (basic) 0.262116
ZNF627 zinc finger protein 627 0.260566
PTHLH parathyroid hormone-like hormone 0.254471
CTGF connective tissue growth factor 0.253381
ITM2A integral membrane protein 2A 0.248487
HIST1H2BN histone cluster 1, H2bn 0.248035
MMP3 matrix metallopeptidase 3 0.246136
F8 coagulation factor VIII, procoagulant component 0.238119
FGF7 fibroblast growth factor 7 0.235607
ITGA5 integrin, alpha 5 (fibronectin receptor, alpha polypeptide) 0.234891
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.230423
TGFB2 transforming growth factor, beta 2 0.226953
UBL7 ubiquitin-like 7 0.22279
BGN biglycan 0.222701
CHST6 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6 0.221466
VWF von Willebrand factor 0.220849
NPR2 natriuretic peptide receptor 2 0.205059
BMP6 bone morphogenetic protein 6 0.204888
PLG plasminogen 0.202009
ALB albumin 0.200328
BMP2 bone morphogenetic protein 2 0.200161
BGLAP bone gamma-carboxyglutamate (gla) protein 0.198991
SDC2 syndecan 2 0.196092
ITGA6 integrin, alpha 6 0.19601
C1QC complement component 1, q subcomponent, C chain 0.194943
TJP1 tight junction protein 1 0.188826
SOX5 SRY (sex determining region Y)-box 5 0.183404
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.179678
ITM2C integral membrane protein 2C 0.17895
IGF1 insulin-like growth factor 1 (somatomedin C) 0.178155
VCAN versican 0.17751
FGFR3 fibroblast growth factor receptor 3 0.176376
COL4A6 collagen, type IV, alpha 6 0.174087
PTH parathyroid hormone 0.172334
UBIAD1 UbiA prenyltransferase domain containing 1 0.171673
SOX6 SRY (sex determining region Y)-box 6 0.171019
KRT15 keratin 15, type I 0.1705
ACE angiotensin I converting enzyme 0.169477
PCNA proliferating cell nuclear antigen 0.167672
COMP cartilage oligomeric matrix protein 0.166823
PLAT plasminogen activator, tissue 0.164258
VSX1 visual system homeobox 1 0.163697
B3GALT6 UDP-Gal:betaGal beta 1,3-galactosyltransferase polypeptide 6 0.162011
SPARC secreted protein, acidic, cysteine-rich (osteonectin) 0.161745
ITGA1 integrin, alpha 1 0.161693
KRT12 keratin 12, type I 0.160305
SERPINH1 serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1) 0.157532
B3GAT1 beta-1,3-glucuronyltransferase 1 0.157129
LAMC1 laminin, gamma 1 (formerly LAMB2) 0.157039
ITGA4 integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor) 0.154932
NOV nephroblastoma overexpressed 0.154693
FANCB Fanconi anemia, complementation group B 0.154614
FGF1 fibroblast growth factor 1 (acidic) 0.154419
CD68 CD68 molecule 0.153547
HBA1 hemoglobin, alpha 1 0.153182
COL14A1 collagen, type XIV, alpha 1 0.153182
ADAMTS5 ADAM metallopeptidase with thrombospondin type 1 motif, 5 0.152305
HBA2 hemoglobin, alpha 2 0.152137
PLAU plasminogen activator, urokinase 0.14938
COL1A1 collagen, type I, alpha 1 0.148693
TINAGL1 tubulointerstitial nephritis antigen-like 1 0.14824
EFNA3 ephrin-A3 0.147449
IGBP1 immunoglobulin (CD79A) binding protein 1 0.146174
FBXL20 F-box and leucine-rich repeat protein 20 0.146108
VEGFA vascular endothelial growth factor A 0.145993
SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1 0.14588
PRG4 proteoglycan 4 0.144524
LAMA2 laminin, alpha 2 0.144015
CILP cartilage intermediate layer protein, nucleotide pyrophosphohydrolase 0.143803
IVL involucrin 0.143173
EDA ectodysplasin A 0.142809
SRY sex determining region Y 0.142568
MATN1 matrilin 1, cartilage matrix protein 0.142512
FMOD fibromodulin 0.142447
SMAD2 SMAD family member 2 0.142313
MUSTN1 musculoskeletal, embryonic nuclear protein 1 0.14212
LAMC2 laminin, gamma 2 0.142072
KDR kinase insert domain receptor 0.142072
VCL vinculin 0.141971
EMCN endomucin 0.141905
THBS1 thrombospondin 1 0.141905
ADAMTS3 ADAM metallopeptidase with thrombospondin type 1 motif, 3 0.141755
IL6 interleukin 6 0.141676
VCAM1 vascular cell adhesion molecule 1 0.14164
CLDN1 claudin 1 0.141601
FRK fyn-related Src family tyrosine kinase 0.141519
CLDN7 claudin 7 0.141515
GSPT1 G1 to S phase transition 1 0.141511
B3GALTL beta 1,3-galactosyltransferase-like 0.141413
MYOF myoferlin 0.141359
TNFAIP6 tumor necrosis factor, alpha-induced protein 6 0.141324
MPV17 MpV17 mitochondrial inner membrane protein 0.141091
NPPC natriuretic peptide C 0.141091
TIMP3 TIMP metallopeptidase inhibitor 3 0.141019
RENBP renin binding protein 0.140938
PLA2G5 phospholipase A2, group V 0.140853
KLK14 kallikrein-related peptidase 14 0.140853
BMP4 bone morphogenetic protein 4 0.140824
LAMA3 laminin, alpha 3 0.140799
NOG noggin 0.140741
ITGB3 integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61) 0.140682
ICAM1 intercellular adhesion molecule 1 0.140588
AKR1B1 aldo-keto reductase family 1, member B1 (aldose reductase) 0.140571
CDH2 cadherin 2, type 1, N-cadherin (neuronal) 0.140567
KRT17 keratin 17, type I 0.140485
LAMA5 laminin, alpha 5 0.14045
MAFB v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B 0.14033
TNF tumor necrosis factor 0.140262
ITGA7 integrin, alpha 7 0.140152
GDF10 growth differentiation factor 10 0.140087
COL5A2 collagen, type V, alpha 2 0.140073
MYOC myocilin, trabecular meshwork inducible glucocorticoid response 0.140022
FGF9 fibroblast growth factor 9 0.140012
CBLN1 cerebellin 1 precursor 0.139725
PDGFA platelet-derived growth factor alpha polypeptide 0.139711
KERA keratocan 0.139298
HBEGF heparin-binding EGF-like growth factor 0.139265
MFAP2 microfibrillar-associated protein 2 0.139036
CNTN1 contactin 1 0.13877
GOT1 glutamic-oxaloacetic transaminase 1, soluble 0.138589
MMP14 matrix metallopeptidase 14 (membrane-inserted) 0.1385
FAM195A family with sequence similarity 195, member A 0.138445
IL1B interleukin 1, beta 0.138409
HOXB2 homeobox B2 0.138409
MMP28 matrix metallopeptidase 28 0.138397
KRT14 keratin 14, type I 0.138317
HCCAT5 hepatocellular carcinoma associated transcript 5 (non-protein coding) 0.1382
COL13A1 collagen, type XIII, alpha 1 0.138093
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.137985
COL12A1 collagen, type XII, alpha 1 0.137966
KRT3 keratin 3, type II 0.137966
TGFBI transforming growth factor, beta-induced, 68kDa 0.137777
MMP7 matrix metallopeptidase 7 0.137698
CDH1 cadherin 1, type 1, E-cadherin (epithelial) 0.137698
ETV5 ets variant 5 0.137685
CCL11 chemokine (C-C motif) ligand 11 0.137605
RBP2 retinol binding protein 2, cellular 0.137524
CD79A CD79a molecule, immunoglobulin-associated alpha 0.137428
NCAM1 neural cell adhesion molecule 1 0.137401
CTSD cathepsin D 0.13729
EMX2 empty spiracles homeobox 2 0.137235
DDR2 discoidin domain receptor tyrosine kinase 2 0.137221
OTOL1 otolin 1 0.137108
GIPR gastric inhibitory polypeptide receptor 0.136936
TYMP thymidine phosphorylase 0.136907
EFS embryonal Fyn-associated substrate 0.136892
FLG filaggrin 0.136819
CYP19A1 cytochrome P450, family 19, subfamily A, polypeptide 1 0.136686
DSG3 desmoglein 3 0.136671
PLA2R1 phospholipase A2 receptor 1, 180kDa 0.136656
KRT8 keratin 8, type II 0.136596
ACTG1 actin gamma 1 0.136445
PTH1R parathyroid hormone 1 receptor 0.134602
ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif, 4 0.134275
FOXA3 forkhead box A3 0.133888
FGF23 fibroblast growth factor 23 0.133828
PLA2G2A phospholipase A2, group IIA (platelets, synovial fluid) 0.133809
IBSP integrin-binding sialoprotein 0.132873
MIA melanoma inhibitory activity 0.132753
LECT1 leukocyte cell derived chemotaxin 1 0.132698
EXT2 exostosin glycosyltransferase 2 0.13262
IGFBP5 insulin-like growth factor binding protein 5 0.131739
PTCH1 patched 1 0.131714
MEF2C myocyte enhancer factor 2C 0.131052
HYAL1 hyaluronoglucosaminidase 1 0.130935
GDF5 growth differentiation factor 5 0.130804
C1QTNF5 C1q and tumor necrosis factor related protein 5 0.129957
SLC20A2 solute carrier family 20 (phosphate transporter), member 2 0.129915
SMAD7 SMAD family member 7 0.129611
FZD7 frizzled class receptor 7 0.129103
CRYAB crystallin, alpha B 0.128587
KLF10 Kruppel-like factor 10 0.128327
ITM2B integral membrane protein 2B 0.127671
LOX lysyl oxidase 0.127373
MATN3 matrilin 3 0.127049
SP3 Sp3 transcription factor 0.127012
EXT1 exostosin glycosyltransferase 1 0.126994
SCIN scinderin 0.126734
GLI1 GLI family zinc finger 1 0.126621
MC3R melanocortin 3 receptor 0.126545
ADCY9 adenylate cyclase 9 0.126526
WNT7A wingless-type MMTV integration site family, member 7A 0.126334
CPN1 carboxypeptidase N, polypeptide 1 0.125738
INS insulin 0.125676
KCNAB2 potassium channel, voltage gated subfamily A regulatory beta subunit 2 0.124607
FRZB frizzled-related protein 0.124404
ADAM12 ADAM metallopeptidase domain 12 0.123238
RARA retinoic acid receptor, alpha 0.123037
PGM5 phosphoglucomutase 5 0.123037
CDKN1B cyclin-dependent kinase inhibitor 1B (p27, Kip1) 0.122961
LGALS3 lectin, galactoside-binding, soluble, 3 0.122756
CTBS chitobiase, di-N-acetyl- 0.122547
DPT dermatopontin 0.122547
MIB1 mindbomb E3 ubiquitin protein ligase 1 0.122282
LUM lumican 0.122092
GOT2 glutamic-oxaloacetic transaminase 2, mitochondrial 0.122065
SEMA5A sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A 0.122038
GGT2 gamma-glutamyltransferase 2 0.12201
NGFR nerve growth factor receptor 0.121956
CSN1S1 casein alpha s1 0.121901
HSPG2 heparan sulfate proteoglycan 2 0.121817
KRT4 keratin 4, type II 0.120899