neurodegeneration Gene Set

Dataset GeneRIF Biological Term Annotations
Category structural or functional annotations
Type biological term
Description a retrogressive impairment of function or destruction of neural tissue (Mammalian Phenotype Ontology, MP_0002229)
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Genes

207 genes co-occuring with the biological term neurodegeneration in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.

Symbol Name
ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1
ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase
ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif, 1
ADD1 adducin 1 (alpha)
AFG3L2 AFG3-like AAA ATPase 2
AGER advanced glycosylation end product-specific receptor
AGTR2 angiotensin II receptor, type 2
AK1 adenylate kinase 1
ALDH1A1 aldehyde dehydrogenase 1 family, member A1
ANP32A acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
APEX1 APEX nuclease (multifunctional DNA repair enzyme) 1
APOB apolipoprotein B
APOE apolipoprotein E
APP amyloid beta (A4) precursor protein
ASIC2 acid sensing (proton gated) ion channel 2
ATF4 activating transcription factor 4
ATM ATM serine/threonine kinase
ATN1 atrophin 1
ATP13A2 ATPase type 13A2
ATXN2 ataxin 2
ATXN3 ataxin 3
ATXN7 ataxin 7
BACE1 beta-site APP-cleaving enzyme 1
BAG2 BCL2-associated athanogene 2
BAX BCL2-associated X protein
BCHE butyrylcholinesterase
BDNF brain-derived neurotrophic factor
BECN1 beclin 1, autophagy related
BOLA3 bolA family member 3
C19ORF12 chromosome 19 open reading frame 12
C1QBP complement component 1, q subcomponent binding protein
C9ORF72 chromosome 9 open reading frame 72
CA8 carbonic anhydrase VIII
CAPN1 calpain 1, (mu/I) large subunit
CARD10 caspase recruitment domain family, member 10
CASP3 caspase 3, apoptosis-related cysteine peptidase
CCL2 chemokine (C-C motif) ligand 2
CCR1 chemokine (C-C motif) receptor 1
CCR5 chemokine (C-C motif) receptor 5 (gene/pseudogene)
CDC42 cell division cycle 42
CDH2 cadherin 2, type 1, N-cadherin (neuronal)
CDK5 cyclin-dependent kinase 5
CDK5R1 cyclin-dependent kinase 5, regulatory subunit 1 (p35)
CFL1 cofilin 1 (non-muscle)
CHAT choline O-acetyltransferase
CHRNE cholinergic receptor, nicotinic, epsilon (muscle)
CKB creatine kinase, brain
CLP1 cleavage and polyadenylation factor I subunit 1
CLU clusterin
CNDP2 CNDP dipeptidase 2 (metallopeptidase M20 family)
COASY CoA synthase
COMT catechol-O-methyltransferase
CORT cortistatin
CRH corticotropin releasing hormone
CSPG4 chondroitin sulfate proteoglycan 4
CTSD cathepsin D
CX3CR1 chemokine (C-X3-C motif) receptor 1
CXCL12 chemokine (C-X-C motif) ligand 12
DCTN1 dynactin 1
DNMT1 DNA (cytosine-5-)-methyltransferase 1
DPYSL2 dihydropyrimidinase-like 2
EFHD2 EF-hand domain family, member D2
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2
FA2H fatty acid 2-hydroxylase
FAS Fas cell surface death receptor
FBXO7 F-box protein 7
FUS FUS RNA binding protein
FXN frataxin
FYN FYN proto-oncogene, Src family tyrosine kinase
GABRB2 gamma-aminobutyric acid (GABA) A receptor, beta 2
GAN gigaxonin
GBA glucosidase, beta, acid
GLO1 glyoxalase I
GLUL glutamate-ammonia ligase
GMFB glia maturation factor, beta
GNAQ guanine nucleotide binding protein (G protein), q polypeptide
GRN granulin
GSK3B glycogen synthase kinase 3 beta
GSTM3 glutathione S-transferase mu 3 (brain)
GZMA granzyme A (granzyme 1, cytotoxic T-lymphocyte-associated serine esterase 3)
GZMB granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)
HAS2 hyaluronan synthase 2
HDAC6 histone deacetylase 6
HEXB hexosaminidase B (beta polypeptide)
HIBCH 3-hydroxyisobutyryl-CoA hydrolase
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)
HK1 hexokinase 1
HMOX1 heme oxygenase 1
HPCA hippocalcin
HSPB1 heat shock 27kDa protein 1
HTRA2 HtrA serine peptidase 2
HTT huntingtin
HYAL3 hyaluronoglucosaminidase 3
IL11 interleukin 11
IL1B interleukin 1, beta
IL1RN interleukin 1 receptor antagonist
IL6 interleukin 6
ITGAV integrin, alpha V
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)
ITPR1 inositol 1,4,5-trisphosphate receptor, type 1
KAT5 K(lysine) acetyltransferase 5
KCNC3 potassium channel, voltage gated Shaw related subfamily C, member 3
KCNIP3 Kv channel interacting protein 3, calsenilin
LDOC1 leucine zipper, down-regulated in cancer 1
LGALS1 lectin, galactoside-binding, soluble, 1
LRRK2 leucine-rich repeat kinase 2
LTF lactotransferrin
MAPK13 mitogen-activated protein kinase 13
MAPK14 mitogen-activated protein kinase 14
MAPK3 mitogen-activated protein kinase 3
MAPT microtubule-associated protein tau
MARK2 MAP/microtubule affinity-regulating kinase 2
MBP myelin basic protein
MGRN1 mahogunin ring finger 1, E3 ubiquitin protein ligase
MIR146A microRNA 146a
MIR21 microRNA 21
MIR494 microRNA 494
MIRLET7B microRNA let-7b
MMP3 matrix metallopeptidase 3
MMP9 matrix metallopeptidase 9
MTDH metadherin
NDUFAF6 NADH dehydrogenase (ubiquinone) complex I, assembly factor 6
NEWENTRY Record to support submission of GeneRIFs for a gene not in Gene (human; man).
NFE2L2 nuclear factor, erythroid 2-like 2
NFIL3 nuclear factor, interleukin 3 regulated
NGF nerve growth factor (beta polypeptide)
NGFR nerve growth factor receptor
NOX4 NADPH oxidase 4
NPC1 Niemann-Pick disease, type C1
NTRK1 neurotrophic tyrosine kinase, receptor, type 1
NUB1 negative regulator of ubiquitin-like proteins 1
OPTN optineurin
PABPN1 poly(A) binding protein, nuclear 1
PANK1 pantothenate kinase 1
PANK2 pantothenate kinase 2
PANK3 pantothenate kinase 3
PARK2 parkin RBR E3 ubiquitin protein ligase
PARK7 parkinson protein 7
PARL presenilin associated, rhomboid-like
PARP1 poly (ADP-ribose) polymerase 1
PCNA proliferating cell nuclear antigen
PICK1 protein interacting with PRKCA 1
PIK3C3 phosphatidylinositol 3-kinase, catalytic subunit type 3
PIK3CG phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma
PIN1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1
PINK1 PTEN induced putative kinase 1
PLA2G6 phospholipase A2, group VI (cytosolic, calcium-independent)
PNPLA6 patatin-like phospholipase domain containing 6
PPARGC1A peroxisome proliferator-activated receptor gamma, coactivator 1 alpha
PPARGC1B peroxisome proliferator-activated receptor gamma, coactivator 1 beta
PPT1 palmitoyl-protein thioesterase 1
PRKAA1 protein kinase, AMP-activated, alpha 1 catalytic subunit
PRNP prion protein
PRPH peripherin
PSEN1 presenilin 1
PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)
RBP3 retinol binding protein 3, interstitial
RCAN1 regulator of calcineurin 1
REG3A regenerating islet-derived 3 alpha
REST RE1-silencing transcription factor
RHOT1 ras homolog family member T1
RHOT2 ras homolog family member T2
RTN4 reticulon 4
RYR2 ryanodine receptor 2 (cardiac)
RYR3 ryanodine receptor 3
SELM selenoprotein M
SERPINA1 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1
SETX senataxin
SLC18A2 solute carrier family 18 (vesicular monoamine transporter), member 2
SLC1A1 solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1
SLC1A2 solute carrier family 1 (glial high affinity glutamate transporter), member 2
SLC1A3 solute carrier family 1 (glial high affinity glutamate transporter), member 3
SLC25A14 solute carrier family 25 (mitochondrial carrier, brain), member 14
SLC6A3 solute carrier family 6 (neurotransmitter transporter), member 3
SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11
SLC8A2 solute carrier family 8 (sodium/calcium exchanger), member 2
SLC8A3 solute carrier family 8 (sodium/calcium exchanger), member 3
SNCA synuclein, alpha (non A4 component of amyloid precursor)
SNCAIP synuclein, alpha interacting protein
SORCS1 sortilin-related VPS10 domain containing receptor 1
SPAST spastin
SPP1 secreted phosphoprotein 1
SQSTM1 sequestosome 1
SRSF7 serine/arginine-rich splicing factor 7
STOX1 storkhead box 1
TAF15 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa
TARDBP TAR DNA binding protein
TBP TATA box binding protein
TDP1 tyrosyl-DNA phosphodiesterase 1
TDP2 tyrosyl-DNA phosphodiesterase 2
TGM2 transglutaminase 2
TLR4 toll-like receptor 4
TLR7 toll-like receptor 7
TNF tumor necrosis factor
TP53 tumor protein p53
TP73 tumor protein p73
TPI1 triosephosphate isomerase 1
TREM2 triggering receptor expressed on myeloid cells 2
TSTD1 thiosulfate sulfurtransferase (rhodanese)-like domain containing 1
UBQLN2 ubiquilin 2
UCHL1 ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase)
UCP2 uncoupling protein 2 (mitochondrial, proton carrier)
USP8 ubiquitin specific peptidase 8
VPS13A vacuolar protein sorting 13 homolog A (S. cerevisiae)
VPS35 vacuolar protein sorting 35 homolog (S. cerevisiae)
VSNL1 visinin-like 1
WDR45 WD repeat domain 45