nucleolar part Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description Any constituent part of a nucleolus, a small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. (Gene Ontology, GO_0044452)
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242 proteins co-occuring with the nucleolar part cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
FBLL1 fibrillarin-like 1 2.17419
NUCLEOLIN nucleolin multifunctional protein 1.84634
UBTF upstream binding transcription factor, RNA polymerase I 1.76238
WDR12 WD repeat domain 12 1.29478
PES1 pescadillo ribosomal biogenesis factor 1 1.23609
NOP58 NOP58 ribonucleoprotein 1.22101
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 1.17158
NOP56 NOP56 ribonucleoprotein 1.13063
UTP18 UTP18 small subunit (SSU) processome component homolog (yeast) 1.11837
CIRH1A cirrhosis, autosomal recessive 1A (cirhin) 1.09543
POLI polymerase (DNA directed) iota 1.08374
WDR43 WD repeat domain 43 1.08323
UTP15 UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae) 1.04833
COIL coilin 1.02181
BOP1 block of proliferation 1 1.00695
UTP6 UTP6, small subunit (SSU) processome component, homolog (yeast) 1.00645
WDR46 WD repeat domain 46 0.992204
TOP1 topoisomerase (DNA) I 0.988294
CDC14A cell division cycle 14A 0.952096
NHP2 NHP2 ribonucleoprotein 0.947808
RUVBL2 RuvB-like AAA ATPase 2 0.942584
WNT10A wingless-type MMTV integration site family, member 10A 0.929833
NAT10 N-acetyltransferase 10 (GCN5-related) 0.893018
UTP20 UTP20, small subunit (SSU) processome component, homolog (yeast) 0.889321
NPB neuropeptide B 0.86123
NOLC1 nucleolar and coiled-body phosphoprotein 1 0.855717
ZNF106 zinc finger protein 106 0.85342
SRSF2 serine/arginine-rich splicing factor 2 0.845614
DCAF13 DDB1 and CUL4 associated factor 13 0.841023
BAZ2A bromodomain adjacent to zinc finger domain, 2A 0.827712
NOL10 nucleolar protein 10 0.818534
RRP36 ribosomal RNA processing 36 homolog (S. cerevisiae) 0.815322
BMS1 BMS1 ribosome biogenesis factor 0.814864
DNTT DNA nucleotidylexotransferase 0.781412
NSUN5 NOP2/Sun domain family, member 5 0.749999
PDCD11 programmed cell death 11 0.727941
NOP2 NOP2 nucleolar protein 0.715902
PHAX phosphorylated adaptor for RNA export 0.70439
CBS cystathionine-beta-synthase 0.698223
PWP1 PWP1 homolog (S. cerevisiae) 0.673762
CLEC3B C-type lectin domain family 3, member B 0.66726
URB2 URB2 ribosome biogenesis 2 homolog (S. cerevisiae) 0.665096
TAF1B TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa 0.658188
LRRC75A-AS1 LRRC75A antisense RNA 1 0.657326
BLOC1S4 biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino 0.644429
PANK3 pantothenate kinase 3 0.644001
TBL3 transducin (beta)-like 3 0.638861
RRP1B ribosomal RNA processing 1B 0.626057
NOL7 nucleolar protein 7, 27kDa 0.61883
MDM1 Mdm1 nuclear protein homolog (mouse) 0.615013
CD3EAP CD3e molecule, epsilon associated protein 0.611625
NIP7 NIP7, nucleolar pre-rRNA processing protein 0.608241
TTF1 transcription termination factor, RNA polymerase I 0.597697
RABL6 RAB, member RAS oncogene family-like 6 0.596014
SENP5 SUMO1/sentrin specific peptidase 5 0.595173
RRS1 RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) 0.576747
SERPINA6 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 6 0.571745
MKI67 marker of proliferation Ki-67 0.562602
RPP14 ribonuclease P/MRP 14kDa subunit 0.551012
PIH1D1 PIH1 domain containing 1 0.541529
GDF6 growth differentiation factor 6 0.532898
NHP2L1 NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae) 0.532488
RCL1 RNA terminal phosphate cyclase-like 1 0.531668
MIR27B microRNA 27b 0.520615
AQR aquarius intron-binding spliceosomal factor 0.509197
CCRN4L CCR4 carbon catabolite repression 4-like (S. cerevisiae) 0.487711
SURF4 surfeit 4 0.474822
MINA MYC induced nuclear antigen 0.471609
P3H4 prolyl 3-hydroxylase family member 4 (non-enzymatic) 0.469203
SURF6 surfeit 6 0.468001
RPP38 ribonuclease P/MRP 38kDa subunit 0.463997
H1FNT H1 histone family, member N, testis-specific 0.451631
DNASE1 deoxyribonuclease I 0.43538
MIR31 microRNA 31 0.426711
RPL7 ribosomal protein L7 0.421997
HIST1H4K histone cluster 1, H4k 0.420036
HIST1H4H histone cluster 1, H4h 0.420036
HIST2H4B histone cluster 2, H4b 0.420036
HIST1H4D histone cluster 1, H4d 0.420036
HIST1H4C histone cluster 1, H4c 0.420036
HIST1H4I histone cluster 1, H4i 0.420036
HIST1H4B histone cluster 1, H4b 0.420036
HIST1H4A histone cluster 1, H4a 0.420036
HIST1H4F histone cluster 1, H4f 0.420036
HIST1H4J histone cluster 1, H4j 0.420036
HIST1H4E histone cluster 1, H4e 0.420036
HIST2H4A histone cluster 2, H4a 0.420036
HIST1H4L histone cluster 1, H4l 0.419644
HIST4H4 histone cluster 4, H4 0.419644
RPL7P32 ribosomal protein L7 pseudogene 32 0.417685
CSN1S1 casein alpha s1 0.414946
CA4 carbonic anhydrase IV 0.410259
H1FX H1 histone family, member X 0.403248
USH1G Usher syndrome 1G (autosomal recessive) 0.397423
CSNK2A1 casein kinase 2, alpha 1 polypeptide 0.397035
DDX56 DEAD (Asp-Glu-Ala-Asp) box helicase 56 0.382739
EXOSC8 exosome component 8 0.379276
DDX21 DEAD (Asp-Glu-Ala-Asp) box helicase 21 0.372366
PANK2 pantothenate kinase 2 0.365477
XRN2 5'-3' exoribonuclease 2 0.364331
FUT3 fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group) 0.361659
POP4 processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae) 0.347587
DHX9 DEAH (Asp-Glu-Ala-His) box helicase 9 0.340395
SCYL1 SCY1-like 1 (S. cerevisiae) 0.327581
KRIT1 KRIT1, ankyrin repeat containing 0.325702
SENP3 SUMO1/sentrin/SMT3 specific peptidase 3 0.322325
STAP2 signal transducing adaptor family member 2 0.319702
BAZ1B bromodomain adjacent to zinc finger domain, 1B 0.312224
FGF3 fibroblast growth factor 3 0.305515
SECISBP2 SECIS binding protein 2 0.302912
HIST2H2BF histone cluster 2, H2bf 0.29994
HIST3H2BB histone cluster 3, H2bb 0.29994
HIST1H2BH histone cluster 1, H2bh 0.29994
HIST1H2BD histone cluster 1, H2bd 0.299569
HIST1H2BC histone cluster 1, H2bc 0.298455
HIST1H2BF histone cluster 1, H2bf 0.298455
RNASE1 ribonuclease, RNase A family, 1 (pancreatic) 0.297713
HIST1H2BA histone cluster 1, H2ba 0.297342
EBNA1BP2 EBNA1 binding protein 2 0.296972
RNASEH2A ribonuclease H2, subunit A 0.289938
MTAP methylthioadenosine phosphorylase 0.288829
NXN nucleoredoxin 0.284032
DDX19B DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B 0.278877
TECR trans-2,3-enoyl-CoA reductase 0.278877
SUMO3 small ubiquitin-like modifier 3 0.273734
TP53 tumor protein p53 0.268969
SUMO2 small ubiquitin-like modifier 2 0.258745
ODF2 outer dense fiber of sperm tails 2 0.251114
UPF2 UPF2 regulator of nonsense transcripts homolog (yeast) 0.24424
NOP10 NOP10 ribonucleoprotein 0.243879
MAFG v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog G 0.232029
RPS10 ribosomal protein S10 0.231315
DEDD death effector domain containing 0.230601
PCNA proliferating cell nuclear antigen 0.230245
CA3 carbonic anhydrase III 0.226331
EEF2K eukaryotic elongation factor 2 kinase 0.225976
OPA3 optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia) 0.219969
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.219969
GGA2 golgi-associated, gamma adaptin ear containing, ARF binding protein 2 0.217861
CA1 carbonic anhydrase I 0.214366
PGLYRP1 peptidoglycan recognition protein 1 0.189222
RHOA ras homolog family member A 0.18516
FANCL Fanconi anemia, complementation group L 0.182122
GPI glucose-6-phosphate isomerase 0.176587
CTCFL CCCTC-binding factor (zinc finger protein)-like 0.176305
TAB1 TGF-beta activated kinase 1/MAP3K7 binding protein 1 0.175745
LBP lipopolysaccharide binding protein 0.166884
SBDS Shwachman-Bodian-Diamond syndrome 0.16233
SP3 Sp3 transcription factor 0.161905
TNR tenascin R 0.160254
HIST2H3PS2 histone cluster 2, H3, pseudogene 2 0.159268
PITX1 paired-like homeodomain 1 0.158882
H3F3A H3 histone, family 3A 0.157578
H3F3B H3 histone, family 3B (H3.3B) 0.157578
MDK midkine (neurite growth-promoting factor 2) 0.123908
ERCC1 excision repair cross-complementation group 1 0.118681
FGF19 fibroblast growth factor 19 0.116676
SPRY1 sprouty homolog 1, antagonist of FGF signaling (Drosophila) 0.115933
PGD phosphogluconate dehydrogenase 0.115538
USP9X ubiquitin specific peptidase 9, X-linked 0.113893
CHRM3 cholinergic receptor, muscarinic 3 0.113379
IVL involucrin 0.112788
CFB complement factor B 0.111782
FGF10 fibroblast growth factor 10 0.111296
BPI bactericidal/permeability-increasing protein 0.110701
FAM20C family with sequence similarity 20, member C 0.110519
RBP3 retinol binding protein 3, interstitial 0.110033
BCR breakpoint cluster region 0.109918
CCKBR cholecystokinin B receptor 0.109889
TFAP2A transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha) 0.109861
CFD complement factor D (adipsin) 0.108302
PNLIP pancreatic lipase 0.107851
MAP3K5 mitogen-activated protein kinase kinase kinase 5 0.107377
AMD1 adenosylmethionine decarboxylase 1 0.106941
CSNK2B casein kinase 2, beta polypeptide 0.106633
PER2 period circadian clock 2 0.104893
DKC1 dyskeratosis congenita 1, dyskerin 0.103237
CDKN2A cyclin-dependent kinase inhibitor 2A 0.103219
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.100993
AQP5 aquaporin 5 0.100741
ADSL adenylosuccinate lyase 0.100227
PLK1 polo-like kinase 1 0.098938
RARS arginyl-tRNA synthetase 0.098876
FOS FBJ murine osteosarcoma viral oncogene homolog 0.098588
CARS cysteinyl-tRNA synthetase 0.098174
DROSHA drosha, ribonuclease type III 0.097733
NTSR1 neurotensin receptor 1 (high affinity) 0.096604
SKIV2L superkiller viralicidic activity 2-like (S. cerevisiae) 0.094418
ADK adenosine kinase 0.094327
EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1 0.089023
JMJD6 jumonji domain containing 6 0.087243
PPIB peptidylprolyl isomerase B (cyclophilin B) 0.086426
PNN pinin, desmosome associated protein 0.08604
RNASE2 ribonuclease, RNase A family, 2 (liver, eosinophil-derived neurotoxin) 0.085654
TOP2B topoisomerase (DNA) II beta 180kDa 0.085498
MGAM maltase-glucoamylase 0.085445
DICER1 dicer 1, ribonuclease type III 0.085211
PRIMA1 proline rich membrane anchor 1 0.085106
CHRM2 cholinergic receptor, muscarinic 2 0.084976
PF4 platelet factor 4 0.084689
BCAN brevican 0.084399
GAL galanin/GMAP prepropeptide 0.084135
NCAN neurocan 0.083792
MN1 meningioma (disrupted in balanced translocation) 1 0.083739
ILF3 interleukin enhancer binding factor 3, 90kDa 0.083713
RAD17 RAD17 homolog (S. pombe) 0.083421
SOD1 superoxide dismutase 1, soluble 0.082752
ISG20 interferon stimulated exonuclease gene 20kDa 0.082322
GDF15 growth differentiation factor 15 0.08216
PTPRZ1 protein tyrosine phosphatase, receptor-type, Z polypeptide 1 0.081564
PRMT5 protein arginine methyltransferase 5 0.081402
WT1 Wilms tumor 1 0.081321
UBA52 ubiquitin A-52 residue ribosomal protein fusion product 1 0.079424
SURF1 surfeit 1 0.078477
SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 0.07789
GAST gastrin 0.077664
EPX eosinophil peroxidase 0.077607
CA2 carbonic anhydrase II 0.07693
GZMA granzyme A (granzyme 1, cytotoxic T-lymphocyte-associated serine esterase 3) 0.076902
AIRE autoimmune regulator 0.076761
SUMO1 small ubiquitin-like modifier 1 0.076448
NTS neurotensin 0.076077
XPO1 exportin 1 0.074761
PTBP1 polypyrimidine tract binding protein 1 0.074503
NFE2 nuclear factor, erythroid 2 0.074214
ZNF135 zinc finger protein 135 0.073953
RPTOR regulatory associated protein of MTOR, complex 1 0.073924
TOP3A topoisomerase (DNA) III alpha 0.073375
CFH complement factor H 0.07291
NPPA natriuretic peptide A 0.072036
PTGDS prostaglandin D2 synthase 21kDa (brain) 0.071889
FMR1 fragile X mental retardation 1 0.071889
TNF tumor necrosis factor 0.071331
AP1M2 adaptor-related protein complex 1, mu 2 subunit 0.071009
WRN Werner syndrome, RecQ helicase-like 0.070921
AP2M1 adaptor-related protein complex 2, mu 1 subunit 0.070833
CSH1 chorionic somatomammotropin hormone 1 (placental lactogen) 0.070627
HPSE heparanase 0.070479
MUT methylmalonyl CoA mutase 0.070479
RNASE3 ribonuclease, RNase A family, 3 0.070479
TIA1 TIA1 cytotoxic granule-associated RNA binding protein 0.07039
GPR162 G protein-coupled receptor 162 0.070154