nucleosome Gene Set

Dataset GeneRIF Biological Term Annotations
Category structural or functional annotations
Type biological term
Description A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. (Gene Ontology, GO_0000786)
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Genes

91 genes co-occuring with the biological term nucleosome in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.

Symbol Name
ACTR8 ARP8 actin-related protein 8 homolog (yeast)
ANP32E acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
ASF1A anti-silencing function 1A histone chaperone
ASF1B anti-silencing function 1B histone chaperone
ATXN10 ataxin 10
CBX1 chromobox homolog 1
CENPA centromere protein A
CHAF1B chromatin assembly factor 1, subunit B (p60)
CHD1L chromodomain helicase DNA binding protein 1-like
CHD4 chromodomain helicase DNA binding protein 4
CHD7 chromodomain helicase DNA binding protein 7
COPS2 COP9 signalosome subunit 2
CTCF CCCTC-binding factor (zinc finger protein)
DGKZ diacylglycerol kinase, zeta
DOT1L DOT1-like histone H3K79 methyltransferase
EP300 E1A binding protein p300
EP400 E1A binding protein p400
ESRRA estrogen-related receptor alpha
FEN1 flap structure-specific endonuclease 1
FXN frataxin
GZMA granzyme A (granzyme 1, cytotoxic T-lymphocyte-associated serine esterase 3)
H19 H19, imprinted maternally expressed transcript (non-protein coding)
H2AFX H2A histone family, member X
H2AFZ H2A histone family, member Z
H3F3A H3 histone, family 3A
HAT1 histone acetyltransferase 1
HBB hemoglobin, beta
HIRA histone cell cycle regulator
HIST1H1A histone cluster 1, H1a
HIST1H2BA histone cluster 1, H2ba
HIST2H2AC histone cluster 2, H2ac
HIST2H3C histone cluster 2, H3c
HIST3H3 histone cluster 3, H3
HIST4H4 histone cluster 4, H4
HJURP Holliday junction recognition protein
HMGA2 high mobility group AT-hook 2
HMGB1 high mobility group box 1
HMGB2 high mobility group box 2
HMGN1 high mobility group nucleosome binding domain 1
HMGN5 high mobility group nucleosome binding domain 5
IL12A interleukin 12A
INO80 INO80 complex subunit
KRAS Kirsten rat sarcoma viral oncogene homolog
LEO1 Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
MBD3 methyl-CpG binding domain protein 3
MBD4 methyl-CpG binding domain protein 4
MSH2 mutS homolog 2
MSH6 mutS homolog 6
MTCH1 mitochondrial carrier 1
MYC v-myc avian myelocytomatosis viral oncogene homolog
NAP1L1 nucleosome assembly protein 1-like 1
NAP1L2 nucleosome assembly protein 1-like 2
NAP1L4 nucleosome assembly protein 1-like 4
NASP nuclear autoantigenic sperm protein (histone-binding)
NELFB negative elongation factor complex member B
NFIX nuclear factor I/X (CCAAT-binding transcription factor)
NFYA nuclear transcription factor Y, alpha
NFYB nuclear transcription factor Y, beta
NFYC nuclear transcription factor Y, gamma
NME1 NME/NM23 nucleoside diphosphate kinase 1
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin)
NPM2 nucleophosmin/nucleoplasmin 2
NPM3 nucleophosmin/nucleoplasmin 3
NUCLEOLIN nucleolin multifunctional protein
PAF1 Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)
PARP1 poly (ADP-ribose) polymerase 1
PCNA proliferating cell nuclear antigen
PHF6 PHD finger protein 6
PIM1 Pim-1 proto-oncogene, serine/threonine kinase
PLG plasminogen
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa
PPARGC1A peroxisome proliferator-activated receptor gamma, coactivator 1 alpha
RAD51 RAD51 recombinase
RCC1 regulator of chromosome condensation 1
RNF168 ring finger protein 168, E3 ubiquitin protein ligase
RNF2 ring finger protein 2
RUVBL1 RuvB-like AAA ATPase 1
RUVBL2 RuvB-like AAA ATPase 2
SALL4 spalt-like transcription factor 4
SET SET nuclear proto-oncogene
SETD2 SET domain containing 2
SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
SSRP1 structure specific recognition protein 1
TERF1 telomeric repeat binding factor (NIMA-interacting) 1
TP53 tumor protein p53
TRIM13 tripartite motif containing 13
TSPY1 testis specific protein, Y-linked 1
UHRF1 ubiquitin-like with PHD and ring finger domains 1
ZMYND8 zinc finger, MYND-type containing 8
ZPBP2 zona pellucida binding protein 2