osteosarcoma Gene Set

Dataset GWASdb SNP-Phenotype Associations
Category disease or phenotype associations
Type phenotype
Description A sarcoma originating in bone-forming cells, affecting the ends of long bones. It is the most common and most malignant of sarcomas of the bones, and occurs chiefly among 10- to 25-year-old youths. (From Stedman, 25th ed)|A malignant mesenchymal tumor arising from the bone.|A usually aggressive malignant bone-forming mesenchymal tumor, predominantly affecting adolescents and young adults. It usually involves bones and less frequently extraosseous sites. It often involves the long bones (particularly distal femur, proximal tibia, and proximal humerus). Pain with or without a palpable mass is the most frequent clinical symptom. It may spread to other anatomic sites, particularly the lungs. (Experimental Factor Ontology, EFO_0000637)
External Link http://jjwanglab.org/gwasdb/gwasdb2/gwasdb2/go_trait/HP:0002669
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Genes

12 genes associated with the osteosarcoma phenotype in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.

Symbol Name Standardized Value
GRM4 glutamate receptor, metabotropic 4 1.25845
ADAMTS6 ADAM metallopeptidase with thrombospondin type 1 motif, 6 1.08774
ADAMTS17 ADAM metallopeptidase with thrombospondin type 1 motif, 17 1.04365
FAM208B family with sequence similarity 208, member B 0.868241
ARHGEF10 Rho guanine nucleotide exchange factor (GEF) 10 0.78061
CREB5 cAMP responsive element binding protein 5 0.577111
ZC3H3 zinc finger CCCH-type containing 3 0.558007
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 0.553442
MTSS1 metastasis suppressor 1 0.509391
GPR149 G protein-coupled receptor 149 0.484775
TRAPPC9 trafficking protein particle complex 9 0.435801
RAD50 RAD50 homolog (S. cerevisiae) 0.429381