perichromatin fibrils Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description Structures of variable diameter visible in the nucleoplasm by electron microscopy, mainly observed near the border of condensed chromatin. The fibrils are enriched in RNA, and are believed to be sites of pre-mRNA splicing and polyadenylylation representing the in situ form of nascent transcripts. (Gene Ontology, GO_0005726)
Similar Terms
Downloads & Tools

Genes

28 proteins co-occuring with the perichromatin fibrils cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
SRSF2 serine/arginine-rich splicing factor 2 1.58161
TAF9 TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa 1.3896
CLOCK clock circadian regulator 1.09035
COIL coilin 1.0413
PSMD13 proteasome (prosome, macropain) 26S subunit, non-ATPase, 13 1.0403
CBS cystathionine-beta-synthase 1.03479
RBM5 RNA binding motif protein 5 0.922322
HNRNPDL heterogeneous nuclear ribonucleoprotein D-like 0.894406
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 0.871346
KRIT1 KRIT1, ankyrin repeat containing 0.857095
CPSF6 cleavage and polyadenylation specific factor 6, 68kDa 0.839646
RNASE1 ribonuclease, RNase A family, 1 (pancreatic) 0.810735
DROSHA drosha, ribonuclease type III 0.796062
SAFB scaffold attachment factor B 0.729284
HNRNPM heterogeneous nuclear ribonucleoprotein M 0.725705
EIF4A3 eukaryotic translation initiation factor 4A3 0.719015
MAGOHB mago-nashi homolog B (Drosophila) 0.71857
MAGOH mago-nashi homolog, proliferation-associated (Drosophila) 0.712351
TIMM50 translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae) 0.705714
RBM10 RNA binding motif protein 10 0.616285
CPSF1 cleavage and polyadenylation specific factor 1, 160kDa 0.584268
HMGB3 high mobility group box 3 0.510011
PABPN1 poly(A) binding protein, nuclear 1 0.474018
CBX5 chromobox homolog 5 0.429465
SNRPA small nuclear ribonucleoprotein polypeptide A 0.421604
SRSF1 serine/arginine-rich splicing factor 1 0.324576
TNFRSF1A tumor necrosis factor receptor superfamily, member 1A 0.17141
FBLL1 fibrillarin-like 1 0.159268