perineuronal net Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A dense extracellular matrix (ECM) structure that forms around many neuronal cell bodies and dendrites late in development and is responsible for synaptic stabilization in the adult brain. (Gene Ontology, GO_0072534)
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Genes

69 proteins co-occuring with the perineuronal net cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
PNN pinin, desmosome associated protein 2.06486
HAPLN4 hyaluronan and proteoglycan link protein 4 2.04014
TNR tenascin R 1.67386
BCAN brevican 1.67022
PNISR PNN-interacting serine/arginine-rich protein 1.64553
HAPLN1 hyaluronan and proteoglycan link protein 1 1.64374
NCAN neurocan 1.48532
ACAN aggrecan 1.13369
SRRM2 serine/arginine repetitive matrix 2 1.07106
PTPRZ1 protein tyrosine phosphatase, receptor-type, Z polypeptide 1 1.00892
FOXJ3 forkhead box J3 0.997595
VCAN versican 0.932658
FOXN3 forkhead box N3 0.878712
RNPS1 RNA binding protein S1, serine-rich domain 0.833679
SLC37A2 solute carrier family 37 (glucose-6-phosphate transporter), member 2 0.829548
PDCL2 phosducin-like 2 0.735115
VNN2 vanin 2 0.727941
PDCL phosducin-like 0.711908
ESRP1 epithelial splicing regulatory protein 1 0.707482
PVALB parvalbumin 0.705273
RNGTT RNA guanylyltransferase and 5'-phosphatase 0.693832
SRSF4 serine/arginine-rich splicing factor 4 0.689888
ARHGEF11 Rho guanine nucleotide exchange factor (GEF) 11 0.670292
PORCN porcupine homolog (Drosophila) 0.665962
DUSP3 dual specificity phosphatase 3 0.647862
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A 0.599381
EVC Ellis van Creveld protein 0.573411
NOVA2 neuro-oncological ventral antigen 2 0.565092
NOC2L nucleolar complex associated 2 homolog (S. cerevisiae) 0.558871
CTNNA3 catenin (cadherin-associated protein), alpha 3 0.53454
DNPH1 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 0.51694
SRSF5 serine/arginine-rich splicing factor 5 0.505131
PERP PERP, TP53 apoptosis effector 0.500664
PKP4 plakophilin 4 0.481661
CLK1 CDC-like kinase 1 0.461998
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.456012
TBCE tubulin folding cofactor E 0.41143
PTPRF protein tyrosine phosphatase, receptor type, F 0.390841
PLXNA1 plexin A1 0.383124
HAS3 hyaluronan synthase 3 0.380814
PHGDH phosphoglycerate dehydrogenase 0.368536
SRSF2 serine/arginine-rich splicing factor 2 0.345692
OTX2 orthodenticle homeobox 2 0.339639
CTBP2 C-terminal binding protein 2 0.333225
NFKB1 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 0.332095
TSHB thyroid stimulating hormone, beta 0.318953
F2 coagulation factor II (thrombin) 0.310732
CTBP1 C-terminal binding protein 1 0.309613
STAB2 stabilin 2 0.307749
SHANK2 SH3 and multiple ankyrin repeat domains 2 0.307377
LGALS3BP lectin, galactoside-binding, soluble, 3 binding protein 0.295489
DSC2 desmocollin 2 0.285138
PTH1R parathyroid hormone 1 receptor 0.280716
DSC3 desmocollin 3 0.25438
DSG2 desmoglein 2 0.251476
ESRRA estrogen-related receptor alpha 0.240276
LYVE1 lymphatic vessel endothelial hyaluronan receptor 1 0.227752
MTA1 metastasis associated 1 0.219969
RTN4R reticulon 4 receptor 0.214714
HNF4A hepatocyte nuclear factor 4, alpha 0.207108
LARS leucyl-tRNA synthetase 0.203699
RBFOX3 RNA binding protein, fox-1 homolog (C. elegans) 3 0.196999
MC4R melanocortin 4 receptor 0.190814
MCAM melanoma cell adhesion molecule 0.182723
NPPB natriuretic peptide B 0.182723
NME4 NME/NM23 nucleoside diphosphate kinase 4 0.180339
PIGR polymeric immunoglobulin receptor 0.166643
CALB2 calbindin 2 0.158692
MYBPC1 myosin binding protein C, slow type 0.156688