perinucleolar compartment Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description The perinucleolar compartment (PNC) is a subnuclear structure associated with, but structurally distinct from, the nucleolus. The PNC contains large amounts of the heterogeneous nuclear ribonucleoprotein complex (hnRNP) called hnRNP 1 (PTB). Many RNA binding proteins as well as RNA polymerase III transcripts are highly enriched in this compartment. PTB and pol III transcripts are required for the integrity of the PNC. (Gene Ontology, GO_0097356)
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Genes

54 proteins co-occuring with the perinucleolar compartment cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
RAVER1 ribonucleoprotein, PTB-binding 1 1.55764
PTBP1 polypyrimidine tract binding protein 1 1.39239
RBMY1B RNA binding motif protein, Y-linked, family 1, member B 1.29157
RAVER2 ribonucleoprotein, PTB-binding 2 1.26022
CDKN2AIP CDKN2A interacting protein 1.15109
RABL6 RAB, member RAS oncogene family-like 6 1.07765
AEN apoptosis enhancing nuclease 1.02929
CELF1 CUGBP, Elav-like family member 1 0.97178
RBMY1J RNA binding motif protein, Y-linked, family 1, member J 0.943059
RPP21 ribonuclease P/MRP 21kDa subunit 0.929833
RPL7P32 ribosomal protein L7 pseudogene 32 0.901818
DDX11L8 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 8 0.837351
BAG4 BCL2-associated athanogene 4 0.836892
DDX11 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 0.821288
KHDRBS1 KH domain containing, RNA binding, signal transduction associated 1 0.780954
KHDRBS3 KH domain containing, RNA binding, signal transduction associated 3 0.742769
NAT2 N-acetyltransferase 2 (arylamine N-acetyltransferase) 0.719906
KHSRP KH-type splicing regulatory protein 0.661208
DAZ2 deleted in azoospermia 2 0.659482
DAZ1 deleted in azoospermia 1 0.656464
HNRNPDL heterogeneous nuclear ribonucleoprotein D-like 0.621379
RNASEH1 ribonuclease H1 0.617557
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 0.600223
HNRNPL heterogeneous nuclear ribonucleoprotein L 0.560528
DAZL deleted in azoospermia-like 0.551012
RPL7 ribosomal protein L7 0.537416
ERCC5 excision repair cross-complementation group 5 0.476831
UBA52 ubiquitin A-52 residue ribosomal protein fusion product 1 0.431041
SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 0.423567
ME3 malic enzyme 3, NADP(+)-dependent, mitochondrial 0.409479
APEH acylaminoacyl-peptide hydrolase 0.390455
RPS27A ribosomal protein S27a 0.382354
TPR translocated promoter region, nuclear basket protein 0.370833
SUV39H1 suppressor of variegation 3-9 homolog 1 (Drosophila) 0.31783
H2AFX H2A histone family, member X 0.313344
KCNQ1 potassium channel, voltage gated KQT-like subfamily Q, member 1 0.29586
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.28846
ITGB4 integrin, beta 4 0.274468
CDKN1A cyclin-dependent kinase inhibitor 1A (p21, Cip1) 0.266042
COIL coilin 0.235966
TBP TATA box binding protein 0.231672
CDKN2A cyclin-dependent kinase inhibitor 2A 0.228819
MKI67 marker of proliferation Ki-67 0.21124
POLI polymerase (DNA directed) iota 0.190495
HIST2H2BF histone cluster 2, H2bf 0.182122
HIST1H2BH histone cluster 1, H2bh 0.182122
HIST3H2BB histone cluster 3, H2bb 0.182122
HIST1H2BD histone cluster 1, H2bd 0.182122
HIST1H2BF histone cluster 1, H2bf 0.18093
HIST1H2BC histone cluster 1, H2bc 0.18093
HIST1H2BA histone cluster 1, H2ba 0.180045
DDX19B DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B 0.173273
WT1 Wilms tumor 1 0.167366
RPS6 ribosomal protein S6 0.167125