pharynx cancer Gene Set

Dataset GWASdb SNP-Disease Associations
Category disease or phenotype associations
Type disease
Description A gastrointestinal system cancer that is located_in the pharyx. (Human Disease Ontology, DOID_0060119)
External Link http://jjwanglab.org/gwasdb/gwasdb2/gwasdb2/go_trait/DOID:0060119
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Genes

96 genes associated with the disease pharynx cancer in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.

Symbol Name Standardized Value
FGFR2 fibroblast growth factor receptor 2 2.39936
CHRNA3 cholinergic receptor, nicotinic, alpha 3 (neuronal) 2.17224
ADH1B alcohol dehydrogenase 1B (class I), beta polypeptide 2.02959
ADH7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide 1.88168
KITLG KIT ligand 1.85709
MSMB microseminoprotein, beta- 1.78965
SMAD7 SMAD family member 7 1.76703
CDK10 cyclin-dependent kinase 10 1.75339
HYKK hydroxylysine kinase 1.72854
ALDH2 aldehyde dehydrogenase 2 family (mitochondrial) 1.68415
ITGA6 integrin, alpha 6 1.63975
IRF4 interferon regulatory factor 4 1.56661
IKZF1 IKAROS family zinc finger 1 (Ikaros) 1.54381
ARID5B AT rich interactive domain 5B (MRF1-like) 1.5149
HNF1B HNF1 homeobox B 1.49201
BARD1 BRCA1 associated RING domain 1 1.47287
TERT telomerase reverse transcriptase 1.45879
HELQ helicase, POLQ-like 1.42467
NAA25 N(alpha)-acetyltransferase 25, NatB auxiliary subunit 1.39396
PIGU phosphatidylinositol glycan anchor biosynthesis, class U 1.37057
PDLIM5 PDZ and LIM domain 5 1.33638
CDKN2B-AS1 CDKN2B antisense RNA 1 1.32403
CASC15 cancer susceptibility candidate 15 (non-protein coding) 1.3186
TYR tyrosinase 1.30327
ADH1C alcohol dehydrogenase 1C (class I), gamma polypeptide 1.26953
BAK1 BCL2-antagonist/killer 1 1.26694
GABBR1 gamma-aminobutyric acid (GABA) B receptor, 1 1.18726
RTEL1 regulator of telomere elongation helicase 1 1.15633
PADI6 peptidyl arginine deiminase, type VI 1.14463
RBMS3 RNA binding motif, single stranded interacting protein 3 1.14463
APOM apolipoprotein M 1.13553
COL5A3 collagen, type V, alpha 3 1.07599
MSH5 mutS homolog 5 1.02476
ZNRD1-AS1 ZNRD1 antisense RNA 1 1.01429
CWF19L1 CWF19-like 1, cell cycle control (S. pombe) 0.986376
PSCA prostate stem cell antigen 0.919371
NR5A2 nuclear receptor subfamily 5, group A, member 2 0.919371
ACOXL acyl-CoA oxidase-like 0.919371
CLPTM1L CLPTM1-like 0.919371
EEFSEC eukaryotic elongation factor, selenocysteine-tRNA-specific 0.896808
SLC22A3 solute carrier family 22 (organic cation transporter), member 3 0.856349
COLCA2 colorectal cancer associated 2 0.856349
SP140 SP140 nuclear body protein 0.856349
EMBP1 embigin pseudogene 1 0.846767
IL33R interleukin 33 receptor 0.831584
LMTK2 lemur tyrosine kinase 2 0.824682
TNFRSF19 tumor necrosis factor receptor superfamily, member 19 0.779178
PLA2G6 phospholipase A2, group VI (cytosolic, calcium-independent) 0.779178
FARP2 FERM, RhoGEF and pleckstrin domain protein 2 0.779178
LSP1 lymphocyte-specific protein 1 0.75119
HELZ2 helicase with zinc finger 2, transcriptional coactivator 0.738669
PRKD2 protein kinase D2 0.73111
RHPN2 rhophilin, Rho GTPase binding protein 2 0.714932
EHBP1 EH domain binding protein 1 0.682799
PHLDB1 pleckstrin homology-like domain, family B, member 1 0.668836
CDH1 cadherin 1, type 1, E-cadherin (epithelial) 0.668836
MECOM MDS1 and EVI1 complex locus 0.668836
C19ORF45 chromosome 19 open reading frame 45 0.668836
FCRL5 Fc receptor-like 5 0.668836
THADA thyroid adenoma associated 0.638262
RNF146 ring finger protein 146 0.624472
ITGA9 integrin, alpha 9 0.595519
MAP1LC3B2 microtubule-associated protein 1 light chain 3 beta 2 0.59062
COL1A1 collagen, type I, alpha 1 0.59062
OPRD1 opioid receptor, delta 1 0.564734
CTBP2 C-terminal binding protein 2 0.555938
RAD51B RAD51 paralog B 0.555938
MT1A metallothionein 1A 0.554394
CEBPE CCAAT/enhancer binding protein (C/EBP), epsilon 0.539904
MTAP methylthioadenosine phosphorylase 0.528352
ZNF230 zinc finger protein 230 0.528352
TNRC6B trinucleotide repeat containing 6B 0.519576
TGM5 transglutaminase 5 0.496271
ACTA2 actin, alpha 2, smooth muscle, aorta 0.496271
LINC00299 long intergenic non-protein coding RNA 299 0.489227
TSSC1 tumor suppressing subtransferable candidate 1 0.485647
ABCC4 ATP-binding cassette, sub-family C (CFTR/MRP), member 4 0.484681
JAZF1 JAZF zinc finger 1 0.484681
RYR2 ryanodine receptor 2 (cardiac) 0.484681
CTDSPL CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like 0.484681
UCK2 uridine-cytidine kinase 2 0.484681
KCNE4 potassium channel, voltage gated subfamily E regulatory beta subunit 4 0.481016
HAPLN1 hyaluronan and proteoglycan link protein 1 0.481016
PKHD1 polycystic kidney and hepatic disease 1 (autosomal recessive) 0.481016
CPEB1 cytoplasmic polyadenylation element binding protein 1 0.478563
ST6GALNAC3 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 0.478563
SDCCAG8 serologically defined colon cancer antigen 8 0.476725
KCNMB2 potassium channel subfamily M regulatory beta subunit 2 0.474846
GRIK1 glutamate receptor, ionotropic, kainate 1 0.474846
FBN1 fibrillin 1 0.474846
SPATA22 spermatogenesis associated 22 0.472291
IL1RAP interleukin 1 receptor accessory protein 0.472092
PARD3 par-3 family cell polarity regulator 0.470932
HCN1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 0.470932
CEMIP cell migration inducing protein, hyaluronan binding 0.455133
HLA-F major histocompatibility complex, class I, F 0.454009